Wall clock time and date at job start Tue Mar 31 2020 10:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46843 * 2 1 4 4 C 1.50696 * 109.47004 * 240.00110 * 2 1 3 5 5 H 1.07998 * 120.00172 * 239.99857 * 4 2 1 6 6 C 1.37884 * 120.00097 * 59.99741 * 4 2 1 7 7 N 1.31512 * 119.99701 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99865 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47090 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47033 * 120.00325 * 8 6 4 11 11 H 1.48496 * 109.47025 * 240.00230 * 8 6 4 12 12 C 1.52996 * 109.47031 * 120.00119 * 2 1 3 13 13 N 1.46502 * 109.47064 * 299.99959 * 12 2 1 14 14 C 1.34779 * 120.00008 * 180.02562 * 13 12 2 15 15 O 1.21550 * 119.99948 * 0.02562 * 14 13 12 16 16 C 1.47849 * 120.00150 * 179.97438 * 14 13 12 17 17 C 1.39575 * 120.14487 * 180.02562 * 16 14 13 18 18 C 1.37955 * 119.85263 * 180.30542 * 17 16 14 19 19 C 1.38362 * 120.14149 * 359.43978 * 18 17 16 20 20 C 1.50701 * 119.85431 * 180.30234 * 19 18 17 21 21 F 1.39899 * 109.47604 * 270.26258 * 20 19 18 22 22 F 1.39908 * 109.46961 * 30.26073 * 20 19 18 23 23 F 1.39898 * 109.47418 * 150.25330 * 20 19 18 24 24 C 1.38356 * 120.29585 * 0.56434 * 19 18 17 25 25 C 1.37959 * 120.14427 * 359.71588 * 24 19 18 26 26 H 1.08993 * 109.47261 * 299.99606 * 1 2 3 27 27 H 1.08996 * 109.47135 * 59.99958 * 1 2 3 28 28 H 1.09005 * 109.46747 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47350 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47483 * 300.00311 * 3 2 1 31 31 H 1.08998 * 109.47098 * 59.99730 * 3 2 1 32 32 H 0.97001 * 119.99324 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.46715 * 180.02562 * 12 2 1 34 34 H 1.08991 * 109.47434 * 60.00168 * 12 2 1 35 35 H 0.96996 * 120.00414 * 0.02562 * 13 12 2 36 36 H 1.08002 * 120.07104 * 0.02562 * 17 16 14 37 37 H 1.07998 * 119.92975 * 179.72529 * 18 17 16 38 38 H 1.07996 * 119.93371 * 179.69885 * 24 19 18 39 39 H 1.07997 * 120.07494 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1474 -2.2863 -3.6038 10 1 1.1678 -1.5865 -4.8165 11 1 3.1472 -0.1857 -4.8160 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5772 -1.4786 3.7810 16 6 1.3853 0.2064 4.8767 17 6 1.7215 -0.2672 6.1459 18 6 1.2536 0.3844 7.2682 19 6 0.4623 1.5118 7.1377 20 6 -0.0397 2.2225 8.3681 21 9 -1.2717 1.6805 8.7499 22 9 0.8825 2.0624 9.4080 23 9 -0.1958 3.5845 8.0891 24 6 0.1253 1.9865 5.8826 25 6 0.5818 1.3409 4.7521 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 0.7095 1.1618 -3.4844 33 1 3.1300 -0.7208 1.2494 34 1 1.6768 -1.7489 1.2492 35 1 0.9937 0.7578 2.3565 36 1 2.3429 -1.1445 6.2490 37 1 1.5093 0.0163 8.2508 38 1 -0.4968 2.8642 5.7875 39 1 0.3177 1.7122 3.7730 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315899394.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:19 Heat of formation + Delta-G solvation = -184.084590 kcal Electronic energy + Delta-G solvation = -25749.548536 eV Core-core repulsion = 21434.267953 eV Total energy + Delta-G solvation = -4315.280583 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.19647 -48.70657 -48.66165 -41.40272 -39.68432 -38.10693 -35.16873 -33.52068 -32.60223 -32.09518 -28.16922 -27.56060 -27.34577 -26.37861 -24.01700 -23.72430 -21.63597 -20.67425 -19.68702 -19.51074 -19.38687 -18.96021 -17.78437 -17.04784 -16.64265 -16.36576 -16.07043 -15.86752 -15.53218 -15.37900 -15.34563 -15.10991 -14.91536 -14.81066 -14.77856 -14.68498 -14.54470 -14.29338 -13.94383 -13.79913 -13.20001 -13.11181 -12.76351 -12.70053 -12.57632 -12.34198 -12.25751 -12.13672 -11.49062 -11.35263 -11.02872 -10.69589 -10.47869 -10.39239 -10.21295 -9.98006 -8.02731 -6.18006 -0.62667 0.15220 1.41534 1.46360 1.55035 1.57880 1.60258 2.15345 2.47758 2.56776 2.64342 2.96174 3.21428 3.37395 3.60085 3.70117 3.77163 4.09563 4.22333 4.38327 4.47542 4.50163 4.70750 4.81144 4.92341 4.98171 5.00174 5.05102 5.09162 5.17796 5.19461 5.31161 5.51567 5.55905 5.67584 5.68190 6.15858 6.21254 6.43412 6.54272 6.86226 7.15290 7.49944 8.96319 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.031469 B = 0.002560 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.547172 B =10933.894802 C =11467.722722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.528 4.528 5 H 0.045 0.955 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.146 3.854 13 N -0.701 5.701 14 C 0.544 3.456 15 O -0.581 6.581 16 C -0.110 4.110 17 C -0.070 4.070 18 C -0.072 4.072 19 C -0.168 4.168 20 C 0.514 3.486 21 F -0.178 7.178 22 F -0.176 7.176 23 F -0.176 7.176 24 C -0.071 4.071 25 C -0.085 4.085 26 H 0.038 0.962 27 H 0.063 0.937 28 H 0.018 0.982 29 H 0.018 0.982 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.260 0.740 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.409 0.591 36 H 0.145 0.855 37 H 0.163 0.837 38 H 0.166 0.834 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.983 5.640 20.790 21.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 C -0.180 4.180 4 C -0.567 4.567 5 H 0.063 0.937 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.022 3.978 13 N -0.352 5.352 14 C 0.332 3.668 15 O -0.462 6.462 16 C -0.113 4.113 17 C -0.089 4.089 18 C -0.090 4.090 19 C -0.169 4.169 20 C 0.460 3.540 21 F -0.159 7.159 22 F -0.158 7.158 23 F -0.157 7.157 24 C -0.089 4.089 25 C -0.103 4.103 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.248 0.752 36 H 0.163 0.837 37 H 0.181 0.819 38 H 0.184 0.816 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.590 5.085 20.710 21.625 hybrid contribution 0.133 -0.194 -1.060 1.086 sum -3.458 4.891 19.650 20.542 Atomic orbital electron populations 1.21692 0.97005 0.98799 1.00530 1.18366 0.93334 0.93077 0.90183 1.21691 0.98032 0.97773 1.00532 1.21302 1.31661 1.12172 0.91549 0.93694 1.25425 0.95148 0.95584 1.00903 1.69904 1.37009 1.23232 1.23547 0.85730 0.78116 0.78747 0.80345 1.20034 1.20800 1.20793 1.21363 0.97328 0.95254 0.83826 1.46075 1.52145 1.31787 1.05171 1.18715 0.80129 0.83870 0.84116 1.90739 1.40041 1.28048 1.87389 1.20210 1.00334 0.97340 0.93378 1.21336 0.97704 0.99634 0.90205 1.21100 0.94582 0.92899 1.00433 1.20305 1.04115 0.99505 0.93022 1.18195 0.75336 0.76966 0.83501 1.93239 1.44657 1.85764 1.92263 1.93203 1.66271 1.95303 1.61004 1.93205 1.95540 1.33379 1.93557 1.21141 0.97956 0.99983 0.89838 1.21538 0.95084 0.93233 1.00462 0.94271 0.91814 0.96239 0.96240 0.91818 0.94266 0.93030 0.93878 0.93873 0.75185 0.83703 0.81917 0.81639 0.82702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.18 8.08 71.98 0.58 -4.60 16 2 C 0.05 2.26 0.50 -52.93 -0.03 2.23 16 3 C -0.12 -5.18 8.08 71.98 0.58 -4.60 16 4 C -0.53 -27.22 8.01 25.60 0.21 -27.02 16 5 H 0.04 2.38 7.74 -2.91 -0.02 2.35 16 6 C 0.03 1.51 5.15 84.66 0.44 1.94 16 7 N -0.90 -46.71 9.35 21.45 0.20 -46.51 16 8 Si 0.94 41.85 29.54 68.60 2.03 43.88 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 C 0.15 5.93 4.50 86.38 0.39 6.32 16 13 N -0.70 -22.76 4.91 -465.98 -2.29 -25.05 16 14 C 0.54 17.62 7.77 86.79 0.67 18.29 16 15 O -0.58 -23.21 16.35 -3.87 -0.06 -23.28 16 16 C -0.11 -2.63 5.87 -20.09 -0.12 -2.74 16 17 C -0.07 -1.47 9.60 22.53 0.22 -1.25 16 18 C -0.07 -1.18 9.38 22.23 0.21 -0.97 16 19 C -0.17 -2.72 5.46 -19.81 -0.11 -2.83 16 20 C 0.51 8.12 3.36 71.24 0.24 8.36 16 21 F -0.18 -3.04 17.30 44.97 0.78 -2.26 16 22 F -0.18 -2.86 16.46 44.97 0.74 -2.12 16 23 F -0.18 -2.83 16.45 44.97 0.74 -2.09 16 24 C -0.07 -1.09 9.38 22.23 0.21 -0.88 16 25 C -0.08 -1.55 9.54 22.53 0.21 -1.33 16 26 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 27 H 0.06 3.03 6.07 -2.39 -0.01 3.01 16 28 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 3.03 6.07 -2.39 -0.01 3.01 16 31 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 32 H 0.26 13.03 8.31 -92.71 -0.77 12.26 16 33 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.41 11.19 4.20 -92.71 -0.39 10.80 16 36 H 0.15 3.10 7.65 -2.91 -0.02 3.07 16 37 H 0.16 1.89 7.60 -2.91 -0.02 1.87 16 38 H 0.17 1.75 7.59 -2.91 -0.02 1.72 16 39 H 0.16 2.33 6.41 -2.91 -0.02 2.31 16 Total: -1.00 -59.49 334.29 6.55 -52.94 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.71 Total: 13.57 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 3.70 Total: -9.09 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -2.09 Total: -71.55 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.06 Total: -23.28 kcal Atomic # 9 Polarization: -8.73 SS G_CDS: 2.26 Total: -6.47 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -59.49 6.55 -52.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315899394.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.140 kcal (2) G-P(sol) polarization free energy of solvation -59.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds