Wall clock time and date at job start Tue Mar 31 2020 11:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00144 * 2 1 4 4 H 1.48503 * 109.47505 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47156 * 299.99820 * 3 2 1 6 6 H 1.48500 * 109.47144 * 59.99625 * 3 2 1 7 7 C 1.37878 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00108 * 173.92101 * 7 2 1 9 9 C 1.50696 * 120.00310 * 353.91672 * 7 2 1 10 10 C 1.52998 * 115.55118 * 87.59777 * 9 7 2 11 11 S 1.81398 * 109.46877 * 40.21584 * 10 9 7 12 12 O 1.42106 * 110.54246 * 283.80883 * 11 10 9 13 13 O 1.42095 * 110.54470 * 60.56614 * 11 10 9 14 14 N 1.65602 * 104.44591 * 172.18916 * 11 10 9 15 15 C 1.47428 * 121.28157 * 92.60235 * 14 11 10 16 16 C 1.52842 * 108.47025 * 228.07581 * 15 14 11 17 17 O 1.42917 * 109.70056 * 306.14713 * 16 15 14 18 18 C 1.43188 * 114.15281 * 64.08722 * 17 16 15 19 19 C 1.46703 * 121.28249 * 272.87845 * 14 11 10 20 20 C 1.53171 * 113.72518 * 2.86624 * 19 14 11 21 21 C 1.53888 * 86.91535 * 270.20077 * 20 19 14 22 22 C 1.53207 * 113.66959 * 264.56512 * 19 14 11 23 23 C 1.52997 * 117.51981 * 233.29907 * 9 7 2 24 24 C 1.53006 * 60.00192 * 107.48021 * 23 9 7 25 25 H 0.96994 * 119.99917 * 5.01874 * 1 2 3 26 26 H 1.08995 * 109.47646 * 160.21960 * 10 9 7 27 27 H 1.09004 * 109.46743 * 280.21871 * 10 9 7 28 28 H 1.09003 * 109.71038 * 347.83450 * 15 14 11 29 29 H 1.08999 * 109.71285 * 108.46379 * 15 14 11 30 30 H 1.09006 * 109.52022 * 186.00192 * 16 15 14 31 31 H 1.09001 * 109.28041 * 66.14457 * 16 15 14 32 32 H 1.08991 * 109.57178 * 180.32981 * 18 17 16 33 33 H 1.09003 * 109.67430 * 60.01868 * 18 17 16 34 34 H 1.08996 * 113.64114 * 24.70950 * 20 19 14 35 35 H 1.09004 * 113.63578 * 155.69983 * 20 19 14 36 36 H 1.09001 * 113.60001 * 220.42538 * 21 20 19 37 37 H 1.09005 * 113.59322 * 89.57559 * 21 20 19 38 38 H 1.08996 * 113.64079 * 204.35115 * 22 19 14 39 39 H 1.09004 * 113.64366 * 335.25502 * 22 19 14 40 40 H 1.09001 * 117.50114 * 214.96432 * 23 9 7 41 41 H 1.09003 * 117.50126 * 359.97438 * 23 9 7 42 42 H 1.08994 * 117.49787 * 252.51092 * 24 23 9 43 43 H 1.08999 * 117.51751 * 107.47799 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0801 -1.1967 -0.0996 9 6 1.2575 -2.4956 0.1372 10 6 0.7538 -3.1089 -1.1708 11 16 2.0154 -2.9070 -2.4585 12 8 2.0307 -1.5687 -2.9361 13 8 3.2180 -3.5658 -2.0860 14 7 1.4451 -3.7906 -3.7378 15 6 0.6236 -3.1686 -4.7922 16 6 -0.6015 -4.0497 -5.0345 17 8 -0.1850 -5.3888 -5.3098 18 6 0.4847 -6.0302 -4.2187 19 6 1.7329 -5.2237 -3.8623 20 6 2.5269 -5.7975 -2.6848 21 6 3.7979 -5.4346 -3.4728 22 6 2.9436 -5.5332 -4.7488 23 6 1.7072 -3.4555 1.2404 24 6 0.3931 -2.6853 1.3853 25 1 -0.4850 0.8368 -0.0735 26 1 0.5537 -4.1699 -1.0214 27 1 -0.1631 -2.6061 -1.4785 28 1 0.3043 -2.1767 -4.4723 29 1 1.2036 -3.0899 -5.7117 30 1 -1.1659 -3.6634 -5.8833 31 1 -1.2324 -4.0413 -4.1456 32 1 0.7732 -7.0399 -4.5103 33 1 -0.1797 -6.0751 -3.3558 34 1 2.4088 -5.2315 -1.7609 35 1 2.3897 -6.8700 -2.5465 36 1 4.5801 -6.1913 -3.4118 37 1 4.1646 -4.4283 -3.2698 38 1 2.9224 -6.5320 -5.1845 39 1 3.1588 -4.7557 -5.4818 40 1 1.6441 -4.5240 1.0344 41 1 2.5439 -3.1460 1.8667 42 1 0.3651 -1.8690 2.1070 43 1 -0.5346 -3.2468 1.2744 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000333269632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:19 Heat of formation + Delta-G solvation = -60.313137 kcal Electronic energy + Delta-G solvation = -27061.210613 eV Core-core repulsion = 23428.597854 eV Total energy + Delta-G solvation = -3632.612759 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.41381 -38.77149 -38.55990 -37.42743 -36.64571 -34.90344 -34.13251 -30.74996 -29.94448 -28.09334 -27.53577 -26.68242 -24.72329 -22.98131 -22.52069 -21.69000 -20.90762 -19.13198 -18.56442 -18.23205 -17.69759 -17.00639 -16.86479 -16.59558 -16.36034 -16.22539 -16.06782 -15.55025 -15.12988 -14.91272 -14.68765 -14.26918 -13.95933 -13.79721 -13.51796 -13.18598 -13.03698 -12.98804 -12.88403 -12.81280 -12.52309 -12.47303 -12.30124 -12.11960 -11.99750 -11.69916 -11.61116 -11.51659 -11.26165 -11.12834 -10.84127 -10.74840 -10.51952 -10.00150 -9.61549 -8.27375 -6.45210 -0.52222 1.30764 1.35566 1.44342 1.89575 2.34847 2.85612 3.01280 3.08182 3.25677 3.42315 3.45063 3.68276 3.73504 3.92674 4.03228 4.10776 4.14313 4.21137 4.32578 4.50217 4.53760 4.57094 4.60758 4.66919 4.69880 4.81036 4.84864 4.87822 4.95568 4.97516 5.01031 5.15794 5.20505 5.25074 5.37983 5.42568 5.53533 5.59920 5.64279 5.93009 6.16459 6.16930 6.65068 7.32455 8.79627 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018252 B = 0.005795 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.718578 B = 4830.603350 C = 5047.096419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.055 3.945 3 Si 0.926 3.074 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.554 4.554 8 H 0.047 0.953 9 C 0.016 3.984 10 C -0.554 4.554 11 S 2.624 3.376 12 O -0.992 6.992 13 O -0.964 6.964 14 N -0.990 5.990 15 C 0.082 3.918 16 C 0.051 3.949 17 O -0.385 6.385 18 C 0.067 3.933 19 C 0.114 3.886 20 C -0.155 4.155 21 C -0.153 4.153 22 C -0.135 4.135 23 C -0.185 4.185 24 C -0.141 4.141 25 H 0.267 0.733 26 H 0.130 0.870 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.130 0.870 31 H 0.059 0.941 32 H 0.134 0.866 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.125 0.875 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.056 0.944 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.930 -13.948 -8.929 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.150 4.150 3 Si 0.751 3.249 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.592 4.592 8 H 0.066 0.934 9 C 0.014 3.986 10 C -0.686 4.686 11 S 2.724 3.276 12 O -0.983 6.983 13 O -0.955 6.955 14 N -0.828 5.828 15 C -0.043 4.043 16 C -0.027 4.027 17 O -0.303 6.303 18 C -0.011 4.011 19 C 0.026 3.974 20 C -0.193 4.193 21 C -0.191 4.191 22 C -0.174 4.174 23 C -0.222 4.222 24 C -0.180 4.180 25 H 0.076 0.924 26 H 0.148 0.852 27 H 0.132 0.868 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.147 0.853 31 H 0.077 0.923 32 H 0.151 0.849 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.143 0.857 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.136 0.864 39 H 0.074 0.926 40 H 0.121 0.879 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.322 -13.374 -9.052 16.204 hybrid contribution -0.102 1.506 0.664 1.649 sum -1.425 -11.868 -8.388 14.603 Atomic orbital electron populations 1.70001 1.06623 1.27910 1.47449 1.25463 0.95547 1.01531 0.92410 0.85992 0.79721 0.80940 0.78251 1.19602 1.20329 1.18989 1.20780 0.92786 0.90837 1.54802 0.93445 1.18278 1.00703 0.93992 0.85629 1.29927 1.16638 1.07898 1.14152 1.04508 0.76557 0.72026 0.74465 1.93442 1.87331 1.37822 1.79656 1.93481 1.43546 1.74392 1.84053 1.57815 1.68435 1.18508 1.37999 1.22165 0.93417 0.97332 0.91424 1.22933 0.94152 0.82214 1.03399 1.87938 1.76386 1.26905 1.39041 1.23056 0.90973 0.96556 0.90477 1.21818 0.96012 0.79955 0.99600 1.23582 0.95957 1.03085 0.96662 1.23354 0.97041 1.03577 0.95150 1.23271 0.94725 1.02982 0.96439 1.23198 0.98138 0.96927 1.03974 1.22444 0.93262 1.00886 1.01437 0.92386 0.85177 0.86841 0.89431 0.90176 0.85256 0.92264 0.84855 0.91767 0.91205 0.85668 0.90533 0.89309 0.86423 0.92560 0.87946 0.90196 0.91820 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.46 12.80 21.45 0.27 -49.19 16 2 C 0.06 3.09 5.38 84.65 0.46 3.55 16 3 Si 0.93 45.19 29.54 68.60 2.03 47.21 16 4 H -0.27 -13.28 7.11 99.48 0.71 -12.58 16 5 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.55 -30.92 7.00 25.60 0.18 -30.74 16 8 H 0.05 2.77 7.82 -2.91 -0.02 2.75 16 9 C 0.02 0.76 1.69 -52.93 -0.09 0.67 16 10 C -0.55 -22.65 6.08 71.98 0.44 -22.21 16 11 S 2.62 109.57 4.01 -56.49 -0.23 109.35 16 12 O -0.99 -50.49 16.04 -127.65 -2.05 -52.53 16 13 O -0.96 -41.53 10.89 -127.65 -1.39 -42.92 16 14 N -0.99 -31.23 3.11 -469.28 -1.46 -32.69 16 15 C 0.08 2.27 6.49 86.15 0.56 2.83 16 16 C 0.05 1.11 6.90 71.93 0.50 1.60 16 17 O -0.38 -8.61 10.76 -148.98 -1.60 -10.21 16 18 C 0.07 1.32 6.20 71.92 0.45 1.77 16 19 C 0.11 2.89 1.25 3.63 0.00 2.89 16 20 C -0.15 -3.95 6.68 30.95 0.21 -3.75 16 21 C -0.15 -4.31 7.29 31.19 0.23 -4.08 16 22 C -0.14 -3.19 7.44 30.96 0.23 -2.96 16 23 C -0.19 -7.64 9.88 30.60 0.30 -7.33 16 24 C -0.14 -6.30 9.30 30.60 0.28 -6.01 16 25 H 0.27 14.16 8.32 -92.71 -0.77 13.39 16 26 H 0.13 4.24 7.54 -2.39 -0.02 4.22 16 27 H 0.11 4.82 8.14 -2.39 -0.02 4.81 16 28 H 0.09 2.66 7.25 -2.39 -0.02 2.64 16 29 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.13 2.09 8.14 -2.38 -0.02 2.07 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.13 1.81 7.95 -2.39 -0.02 1.79 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 2.13 4.89 -2.39 -0.01 2.12 16 35 H 0.13 2.20 8.10 -2.39 -0.02 2.18 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.09 3.24 5.25 -16.77 -0.09 3.15 16 38 H 0.12 2.00 7.97 -2.39 -0.02 1.98 16 39 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.10 3.49 8.09 -2.39 -0.02 3.47 16 41 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 42 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 43 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -69.71 344.64 0.24 -69.48 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.92 Total: 25.27 kcal Atomic # 6 Polarization: -67.51 SS G_CDS: 3.74 Total: -63.77 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -1.18 Total: -81.88 kcal Atomic # 8 Polarization: -100.62 SS G_CDS: -5.04 Total: -105.66 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: 109.57 SS G_CDS: -0.23 Total: 109.35 kcal Total: -69.71 0.24 -69.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333269632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.165 kcal (2) G-P(sol) polarization free energy of solvation -69.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds