Wall clock time and date at job start Tue Mar 31 2020 11:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99726 * 2 1 4 4 H 1.48497 * 109.47175 * 269.99970 * 3 2 1 5 5 H 1.48496 * 109.47168 * 30.00579 * 3 2 1 6 6 H 1.48504 * 109.46873 * 150.00113 * 3 2 1 7 7 C 1.37878 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 173.05604 * 7 2 1 9 9 C 1.50697 * 119.99667 * 353.05583 * 7 2 1 10 10 C 1.53005 * 115.54829 * 84.80552 * 9 7 2 11 11 S 1.81404 * 109.47137 * 39.92236 * 10 9 7 12 12 O 1.42103 * 110.54118 * 62.15201 * 11 10 9 13 13 O 1.42098 * 110.54262 * 285.39443 * 11 10 9 14 14 N 1.65599 * 104.44691 * 173.77167 * 11 10 9 15 15 C 1.47156 * 120.98062 * 89.99772 * 14 11 10 16 16 C 1.53293 * 108.41698 * 230.54201 * 15 14 11 17 17 O 1.42966 * 109.22105 * 307.67804 * 16 15 14 18 18 C 1.42965 * 114.16332 * 62.58692 * 17 16 15 19 19 C 1.47232 * 121.03399 * 270.02361 * 14 11 10 20 20 H 1.08993 * 109.67260 * 249.19351 * 19 14 11 21 21 C 1.53005 * 109.69724 * 9.71879 * 19 14 11 22 22 C 1.53002 * 117.49428 * 247.71016 * 21 19 14 23 23 C 1.52997 * 117.49534 * 179.05215 * 21 19 14 24 24 C 1.53005 * 117.51714 * 230.50252 * 9 7 2 25 25 C 1.52997 * 59.99858 * 107.48486 * 24 9 7 26 26 H 0.97003 * 120.00025 * 5.02758 * 1 2 3 27 27 H 1.09005 * 109.46836 * 279.92003 * 10 9 7 28 28 H 1.09006 * 109.47162 * 159.92418 * 10 9 7 29 29 H 1.09005 * 109.67839 * 110.80205 * 15 14 11 30 30 H 1.09000 * 109.68146 * 350.28646 * 15 14 11 31 31 H 1.08993 * 109.51498 * 67.60624 * 16 15 14 32 32 H 1.08997 * 109.51218 * 187.71208 * 16 15 14 33 33 H 1.08998 * 109.51694 * 57.34117 * 18 17 16 34 34 H 1.09001 * 109.50986 * 177.49140 * 18 17 16 35 35 H 1.08996 * 115.54815 * 33.37623 * 21 19 14 36 36 H 1.08997 * 117.49807 * 0.02562 * 22 21 19 37 37 H 1.08999 * 117.49701 * 145.02346 * 22 21 19 38 38 H 1.09008 * 117.49508 * 214.97444 * 23 21 19 39 39 H 1.09000 * 117.49945 * 359.97386 * 23 21 19 40 40 H 1.08997 * 117.49702 * 214.97425 * 24 9 7 41 41 H 1.08993 * 117.49807 * 359.97438 * 24 9 7 42 42 H 1.09002 * 117.49775 * 252.50983 * 25 24 9 43 43 H 1.09000 * 117.50116 * 107.48871 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0786 -1.1973 -0.1136 9 6 1.2593 -2.4944 0.1567 10 6 0.6813 -3.0836 -1.1316 11 16 1.8676 -2.8578 -2.4853 12 8 3.0758 -3.5536 -2.2107 13 8 1.8833 -1.5031 -2.9138 14 7 1.2027 -3.6813 -3.7589 15 6 0.2904 -3.0124 -4.7001 16 6 -0.9732 -3.8688 -4.8412 17 8 -0.5989 -5.2099 -5.1656 18 6 0.1828 -5.8589 -4.1599 19 6 1.5056 -5.1045 -3.9839 20 1 2.1125 -5.2128 -4.8827 21 6 2.2634 -5.6670 -2.7795 22 6 3.7242 -6.0706 -2.9898 23 6 2.6497 -7.1470 -2.8165 24 6 1.7641 -3.4746 1.2175 25 6 0.4641 -2.7014 1.4472 26 1 -0.4850 0.8368 -0.0736 27 1 -0.2513 -2.5753 -1.3771 28 1 0.4891 -4.1472 -0.9905 29 1 0.7750 -2.9102 -5.6711 30 1 0.0252 -2.0271 -4.3167 31 1 -1.5245 -3.8619 -3.9011 32 1 -1.6010 -3.4633 -5.6346 33 1 -0.3643 -5.8593 -3.2172 34 1 0.3870 -6.8857 -4.4636 35 1 1.9928 -5.2414 -1.8133 36 1 4.1454 -5.9349 -3.9859 37 1 4.4146 -5.9108 -2.1616 38 1 2.6337 -7.6949 -1.8743 39 1 2.3636 -7.7199 -3.6986 40 1 1.6844 -4.5392 0.9976 41 1 2.6356 -3.1792 1.8016 42 1 0.4801 -1.8971 2.1828 43 1 -0.4710 -3.2572 1.3785 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333426976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:48 Heat of formation + Delta-G solvation = -48.529915 kcal Electronic energy + Delta-G solvation = -26786.525021 eV Core-core repulsion = 23154.423221 eV Total energy + Delta-G solvation = -3632.101800 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.56473 -37.34460 -36.75688 -35.87668 -34.91028 -34.26128 -32.08030 -31.00304 -28.24714 -26.93012 -25.49784 -24.71804 -22.15976 -21.42121 -21.23876 -20.94830 -19.32456 -18.41285 -17.08554 -16.44348 -16.35292 -15.94000 -15.27876 -15.11664 -14.97498 -14.70127 -14.47258 -14.08234 -14.06836 -13.63781 -13.38112 -13.11522 -12.39360 -12.15676 -11.87326 -11.66450 -11.56867 -11.34978 -11.23156 -11.09457 -11.02248 -10.93008 -10.88318 -10.55448 -10.44282 -10.40341 -10.30403 -10.17151 -10.01213 -9.73598 -9.48582 -8.96442 -8.60018 -8.54469 -8.12337 -6.18854 -4.33528 1.12603 3.29768 3.33575 3.38180 3.40973 3.78563 3.97708 4.37478 4.58809 4.73821 4.77556 4.89952 5.01954 5.03565 5.11438 5.14467 5.18430 5.22815 5.37291 5.40917 5.45785 5.55277 5.58765 5.75016 5.75298 5.81654 5.90966 5.98387 6.16062 6.22282 6.23184 6.33445 6.36645 6.45210 6.58179 6.65594 6.83989 6.94120 7.08357 7.15249 7.35829 7.75844 8.15592 8.75221 9.43753 10.88714 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.016398 B = 0.005995 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.087966 B = 4669.393183 C = 5201.898383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.097 3.903 3 Si 0.888 3.112 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.543 4.543 8 H 0.069 0.931 9 C 0.053 3.947 10 C -0.563 4.563 11 S 2.623 3.377 12 O -0.956 6.956 13 O -0.942 6.942 14 N -1.013 6.013 15 C 0.088 3.912 16 C 0.045 3.955 17 O -0.381 6.381 18 C 0.054 3.946 19 C 0.158 3.842 20 H 0.080 0.920 21 C -0.165 4.165 22 C -0.134 4.134 23 C -0.186 4.186 24 C -0.203 4.203 25 C -0.145 4.145 26 H 0.265 0.735 27 H 0.124 0.876 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.627 -11.692 -7.677 14.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.110 4.110 3 Si 0.715 3.285 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.580 4.580 8 H 0.087 0.913 9 C 0.051 3.949 10 C -0.695 4.695 11 S 2.721 3.279 12 O -0.946 6.946 13 O -0.932 6.932 14 N -0.850 5.850 15 C -0.038 4.038 16 C -0.033 4.033 17 O -0.299 6.299 18 C -0.024 4.024 19 C 0.052 3.948 20 H 0.098 0.902 21 C -0.184 4.184 22 C -0.172 4.172 23 C -0.224 4.224 24 C -0.241 4.241 25 C -0.184 4.184 26 H 0.075 0.925 27 H 0.142 0.858 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.027 -11.166 -7.861 13.695 hybrid contribution -0.332 0.862 0.553 1.076 sum -1.359 -10.304 -7.309 12.706 Atomic orbital electron populations 1.69949 1.06196 1.27487 1.46496 1.24895 0.94724 0.99300 0.92059 0.86616 0.80173 0.82771 0.78953 1.19567 1.20917 1.19382 1.20583 0.93636 0.88782 1.55040 0.91321 1.18145 0.98650 0.93929 0.84147 1.30113 1.16728 1.05959 1.16655 1.04860 0.75967 0.73079 0.73996 1.93554 1.42361 1.73875 1.84836 1.93514 1.86312 1.33617 1.79805 1.58557 1.62920 1.19423 1.44057 1.22010 0.90404 0.96763 0.94592 1.23019 0.95777 0.82702 1.01816 1.87911 1.71334 1.26767 1.43904 1.22993 0.90897 0.96240 0.92300 1.21064 0.95743 0.80456 0.97564 0.90244 1.22409 0.99838 0.97483 0.98711 1.22753 0.91398 1.00046 1.02955 1.23113 1.05225 0.91000 1.03034 1.23109 0.98709 0.95458 1.06789 1.22535 0.92378 1.01128 1.02375 0.92534 0.85778 0.88883 0.90786 0.87988 0.92415 0.87834 0.92431 0.88034 0.87128 0.89237 0.88127 0.88628 0.88964 0.91392 0.89696 0.89622 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.89 12.96 55.43 0.72 -23.18 16 2 C 0.10 2.68 5.39 -17.82 -0.10 2.58 16 3 Si 0.89 21.75 29.55 -169.99 -5.02 16.73 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.54 -14.83 6.89 -34.44 -0.24 -15.07 16 8 H 0.07 1.93 7.82 -52.49 -0.41 1.52 16 9 C 0.05 1.28 1.64 -155.66 -0.26 1.03 16 10 C -0.56 -11.77 6.00 37.16 0.22 -11.55 16 11 S 2.62 55.18 3.95 -107.50 -0.42 54.75 16 12 O -0.96 -20.83 13.28 -57.54 -0.76 -21.60 16 13 O -0.94 -23.50 15.95 -57.54 -0.92 -24.42 16 14 N -1.01 -16.71 3.28 -105.97 -0.35 -17.06 16 15 C 0.09 1.27 6.50 -3.53 -0.02 1.25 16 16 C 0.05 0.55 6.99 37.31 0.26 0.81 16 17 O -0.38 -4.98 10.74 -35.23 -0.38 -5.36 16 18 C 0.05 0.65 6.02 37.31 0.22 0.87 16 19 C 0.16 2.23 3.27 -67.38 -0.22 2.01 16 20 H 0.08 1.08 7.91 -51.93 -0.41 0.67 16 21 C -0.17 -2.39 3.20 -90.62 -0.29 -2.68 16 22 C -0.13 -1.85 9.05 -26.69 -0.24 -2.10 16 23 C -0.19 -2.08 9.84 -26.69 -0.26 -2.34 16 24 C -0.20 -4.34 9.88 -26.73 -0.26 -4.61 16 25 C -0.15 -3.28 9.49 -26.73 -0.25 -3.54 16 26 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 27 H 0.12 2.66 8.14 -51.92 -0.42 2.24 16 28 H 0.09 1.64 6.89 -51.92 -0.36 1.28 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.10 1.55 7.23 -51.93 -0.38 1.17 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.98 7.62 -51.93 -0.40 0.59 16 35 H 0.11 1.80 4.96 -51.93 -0.26 1.54 16 36 H 0.09 1.14 8.05 -51.93 -0.42 0.73 16 37 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 39 H 0.09 0.84 7.73 -51.93 -0.40 0.44 16 40 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 41 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 42 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -31.92 351.21 -10.09 -42.01 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.81 Total: 6.16 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: -1.44 Total: -33.32 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.37 Total: -40.24 kcal Atomic # 8 Polarization: -49.32 SS G_CDS: -2.06 Total: -51.38 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 55.18 SS G_CDS: -0.42 Total: 54.75 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.92 -10.09 -42.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333426976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.524 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds