Wall clock time and date at job start Tue Mar 31 2020 11:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99782 * 2 1 4 4 H 1.48496 * 109.47206 * 94.73689 * 3 2 1 5 5 H 1.48502 * 109.46863 * 214.73274 * 3 2 1 6 6 H 1.48491 * 109.47153 * 334.73200 * 3 2 1 7 7 C 1.37877 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00295 * 354.13857 * 7 2 1 9 9 C 1.50702 * 120.00086 * 174.13152 * 7 2 1 10 10 C 1.53003 * 115.55129 * 277.27861 * 9 7 2 11 11 S 1.81394 * 109.47015 * 294.57502 * 10 9 7 12 12 O 1.42099 * 110.54513 * 297.72253 * 11 10 9 13 13 O 1.42101 * 110.54219 * 74.47728 * 11 10 9 14 14 N 1.65603 * 104.45089 * 186.09670 * 11 10 9 15 15 C 1.47129 * 121.04309 * 89.99733 * 14 11 10 16 16 C 1.53228 * 108.71320 * 127.83503 * 15 14 11 17 17 O 1.43091 * 109.34495 * 54.07078 * 16 15 14 18 18 C 1.42593 * 113.96031 * 299.89412 * 17 16 15 19 19 C 1.53364 * 113.66771 * 287.42830 * 18 17 16 20 20 C 1.53852 * 86.96144 * 270.35364 * 19 18 17 21 21 C 1.53341 * 113.70884 * 189.35274 * 18 17 16 22 22 C 1.47317 * 121.04783 * 269.72304 * 14 11 10 23 23 C 1.53003 * 117.49961 * 131.56683 * 9 7 2 24 24 C 1.52998 * 59.99972 * 252.51137 * 23 9 7 25 25 H 0.97000 * 120.00247 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46774 * 54.57522 * 10 9 7 27 27 H 1.09002 * 109.47042 * 174.57760 * 10 9 7 28 28 H 1.08999 * 109.59874 * 247.60707 * 15 14 11 29 29 H 1.09008 * 109.59724 * 8.07012 * 15 14 11 30 30 H 1.08998 * 109.49112 * 174.02986 * 16 15 14 31 31 H 1.08998 * 109.48890 * 294.08251 * 16 15 14 32 32 H 1.09004 * 113.63888 * 24.87412 * 19 18 17 33 33 H 1.08998 * 113.63673 * 155.83463 * 19 18 17 34 34 H 1.09002 * 113.60285 * 220.31044 * 20 19 18 35 35 H 1.08990 * 113.68078 * 89.45212 * 20 19 18 36 36 H 1.08997 * 113.63266 * 204.12700 * 21 18 17 37 37 H 1.09000 * 113.63519 * 335.00282 * 21 18 17 38 38 H 1.08996 * 109.74770 * 348.15104 * 22 14 11 39 39 H 1.09004 * 109.74669 * 108.87299 * 22 14 11 40 40 H 1.08998 * 117.49454 * 0.02562 * 23 9 7 41 41 H 1.09000 * 117.49388 * 145.02090 * 23 9 7 42 42 H 1.09004 * 117.50248 * 252.50632 * 24 23 9 43 43 H 1.09004 * 117.49808 * 107.49023 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5967 1.9887 1.3952 5 1 3.4930 1.4712 -0.7977 6 1 1.4001 2.6795 -0.5976 7 6 2.0045 -1.1940 0.0005 8 1 1.4689 -2.1269 0.0965 9 6 3.5056 -1.1975 -0.1329 10 6 4.0413 -1.0949 -1.5624 11 16 3.5729 -2.5807 -2.4917 12 8 4.1567 -3.7379 -1.9092 13 8 2.1920 -2.5455 -2.8251 14 7 4.3484 -2.4201 -3.9461 15 6 5.7048 -2.9540 -4.1457 16 6 5.7066 -3.8353 -5.3991 17 8 5.1889 -3.0885 -6.5045 18 6 3.8529 -2.6269 -6.3165 19 6 2.7998 -3.7387 -6.4003 20 6 2.7321 -3.4481 -7.9096 21 6 3.2239 -2.0280 -7.5802 22 6 3.6995 -1.7435 -5.0824 23 6 4.3013 -2.0460 0.8610 24 6 4.3149 -0.5203 0.9750 25 1 -0.4850 0.8400 -0.0004 26 1 3.6181 -0.2150 -2.0467 27 1 5.1277 -1.0091 -1.5380 28 1 6.4063 -2.1301 -4.2770 29 1 5.9945 -3.5493 -3.2797 30 1 6.7261 -4.1518 -5.6197 31 1 5.0824 -4.7123 -5.2279 32 1 3.1895 -4.7286 -6.1629 33 1 1.8768 -3.5072 -5.8689 34 1 1.7204 -3.4766 -8.3146 35 1 3.4405 -4.0295 -8.4996 36 1 2.4182 -1.3231 -7.3753 37 1 3.9545 -1.6414 -8.2908 38 1 2.6415 -1.5943 -4.8669 39 1 4.1789 -0.7809 -5.2605 40 1 3.7390 -2.6020 1.6111 41 1 5.2066 -2.5315 0.4965 42 1 5.2292 -0.0021 0.6856 43 1 3.7616 -0.0723 1.8004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333472951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:18 Heat of formation + Delta-G solvation = -55.174058 kcal Electronic energy + Delta-G solvation = -26223.173972 eV Core-core repulsion = 22590.784061 eV Total energy + Delta-G solvation = -3632.389911 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.45303 -37.17519 -36.68201 -36.30419 -35.26019 -34.67855 -32.21266 -30.15939 -28.55506 -26.76497 -25.90678 -25.53478 -23.86343 -21.90593 -21.72815 -19.46062 -19.24523 -18.43367 -17.37173 -16.81773 -16.48441 -15.87855 -15.70313 -15.19478 -14.97405 -14.81756 -14.63950 -14.24307 -13.96921 -13.79922 -13.43641 -13.06563 -12.67540 -12.45210 -12.33997 -12.24714 -11.75873 -11.62583 -11.43583 -11.25912 -11.13555 -11.12494 -11.00648 -10.93987 -10.84770 -10.66874 -10.44893 -10.21565 -10.14130 -9.96005 -9.69105 -9.25262 -8.79291 -8.68559 -8.39525 -6.20084 -4.28210 0.82724 3.11176 3.19523 3.29491 3.31581 3.49635 4.31603 4.40195 4.42692 4.51361 4.64168 4.71730 4.76925 4.79767 4.80703 4.96313 5.03716 5.21349 5.26337 5.33417 5.45152 5.51802 5.60314 5.64999 5.67234 5.71904 5.74417 5.83739 5.87980 5.94085 5.98430 6.00329 6.16874 6.22442 6.24456 6.38136 6.57501 6.64796 6.83955 7.00769 7.13954 7.55048 8.33536 8.84302 9.40681 10.91028 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.019130 B = 0.005047 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.323610 B = 5547.008550 C = 6151.662185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.089 3.911 3 Si 0.874 3.126 4 H -0.273 1.273 5 H -0.259 1.259 6 H -0.291 1.291 7 C -0.511 4.511 8 H 0.086 0.914 9 C 0.001 3.999 10 C -0.574 4.574 11 S 2.613 3.387 12 O -0.964 6.964 13 O -0.932 6.932 14 N -1.012 6.012 15 C 0.083 3.917 16 C 0.051 3.949 17 O -0.355 6.355 18 C 0.083 3.917 19 C -0.165 4.165 20 C -0.134 4.134 21 C -0.122 4.122 22 C 0.102 3.898 23 C -0.176 4.176 24 C -0.187 4.187 25 H 0.268 0.732 26 H 0.125 0.875 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.295 -3.166 -13.125 17.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.116 4.116 3 Si 0.701 3.299 4 H -0.199 1.199 5 H -0.183 1.183 6 H -0.217 1.217 7 C -0.548 4.548 8 H 0.104 0.896 9 C -0.002 4.002 10 C -0.705 4.705 11 S 2.710 3.290 12 O -0.955 6.955 13 O -0.922 6.922 14 N -0.849 5.849 15 C -0.043 4.043 16 C -0.027 4.027 17 O -0.273 6.273 18 C 0.041 3.959 19 C -0.203 4.203 20 C -0.171 4.171 21 C -0.160 4.160 22 C -0.023 4.023 23 C -0.214 4.214 24 C -0.226 4.226 25 H 0.078 0.922 26 H 0.143 0.857 27 H 0.123 0.877 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.650 -3.750 -13.060 17.265 hybrid contribution 0.765 1.636 0.416 1.853 sum 11.415 -2.114 -12.644 17.165 Atomic orbital electron populations 1.69901 1.06363 1.27378 1.47743 1.24945 0.94516 0.98957 0.93168 0.86955 0.80374 0.83392 0.79200 1.19904 1.18315 1.21749 1.20319 0.85967 0.95527 1.52954 0.89582 1.18869 0.94832 1.02572 0.83932 1.30318 1.08162 1.20698 1.11364 1.05108 0.74220 0.76940 0.72740 1.93489 1.79113 1.45677 1.77223 1.93574 1.30243 1.87115 1.81307 1.58319 1.26635 1.72105 1.27852 1.22019 0.83720 0.98428 1.00121 1.22892 0.99773 0.93776 0.86275 1.87862 1.27404 1.72209 1.39834 1.22422 0.83165 0.95246 0.95033 1.23537 1.00137 0.99496 0.97137 1.22782 1.01447 0.96525 0.96358 1.22925 0.99917 0.97477 0.95637 1.21929 0.99848 0.95250 0.85321 1.22993 1.01520 0.92892 1.03954 1.23016 1.01265 0.95208 1.03075 0.92236 0.85699 0.87694 0.90976 0.87919 0.87797 0.92341 0.91088 0.88340 0.91153 0.90015 0.88326 0.90358 0.87309 0.91052 0.88638 0.90026 0.90701 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.40 13.96 55.43 0.77 -25.62 16 2 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 3 Si 0.87 20.87 24.81 -169.99 -4.22 16.65 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.26 -5.72 5.95 56.52 0.34 -5.38 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.51 -14.16 8.78 -34.44 -0.30 -14.46 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 9 C 0.00 0.02 0.79 -155.66 -0.12 -0.11 16 10 C -0.57 -11.27 5.68 37.16 0.21 -11.06 16 11 S 2.61 51.36 5.21 -107.50 -0.56 50.80 16 12 O -0.96 -20.17 16.63 -57.54 -0.96 -21.12 16 13 O -0.93 -21.82 16.29 -57.54 -0.94 -22.76 16 14 N -1.01 -15.34 3.29 -113.42 -0.37 -15.71 16 15 C 0.08 1.02 6.61 -3.58 -0.02 1.00 16 16 C 0.05 0.57 6.88 37.28 0.26 0.83 16 17 O -0.35 -4.47 10.44 -35.23 -0.37 -4.84 16 18 C 0.08 1.04 1.12 -90.49 -0.10 0.94 16 19 C -0.17 -2.08 7.22 -26.10 -0.19 -2.27 16 20 C -0.13 -1.36 8.03 -25.84 -0.21 -1.56 16 21 C -0.12 -1.24 7.47 -26.11 -0.20 -1.43 16 22 C 0.10 1.41 5.79 -3.83 -0.02 1.39 16 23 C -0.18 -3.60 9.96 -26.73 -0.27 -3.86 16 24 C -0.19 -3.84 7.62 -26.73 -0.20 -4.04 16 25 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.12 2.44 6.73 -51.93 -0.35 2.09 16 27 H 0.10 1.67 8.09 -51.92 -0.42 1.25 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.10 1.24 6.89 -51.92 -0.36 0.88 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.69 7.11 -51.93 -0.37 0.32 16 32 H 0.07 0.90 7.18 -51.93 -0.37 0.53 16 33 H 0.10 1.33 7.93 -51.93 -0.41 0.92 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.11 1.61 6.65 -51.93 -0.35 1.26 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 41 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.09 1.98 7.28 -51.93 -0.38 1.60 16 LS Contribution 347.79 15.07 5.24 5.24 Total: -1.00 -33.66 347.79 -9.51 -43.18 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.85 Total: 6.41 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: -1.26 Total: -32.22 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.40 Total: -41.34 kcal Atomic # 8 Polarization: -46.45 SS G_CDS: -2.26 Total: -48.72 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.22 Total: 16.65 kcal Atomic # 16 Polarization: 51.36 SS G_CDS: -0.56 Total: 50.80 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.66 -9.51 -43.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333472951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.998 kcal (2) G-P(sol) polarization free energy of solvation -33.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds