Wall clock time and date at job start Tue Mar 31 2020 11:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99782 * 2 1 4 4 H 1.48496 * 109.47206 * 94.73689 * 3 2 1 5 5 H 1.48502 * 109.46863 * 214.73274 * 3 2 1 6 6 H 1.48491 * 109.47153 * 334.73200 * 3 2 1 7 7 C 1.37877 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00295 * 354.13857 * 7 2 1 9 9 C 1.50702 * 120.00086 * 174.13152 * 7 2 1 10 10 C 1.53003 * 115.55129 * 277.27861 * 9 7 2 11 11 S 1.81394 * 109.47015 * 294.57502 * 10 9 7 12 12 O 1.42099 * 110.54513 * 297.72253 * 11 10 9 13 13 O 1.42101 * 110.54219 * 74.47728 * 11 10 9 14 14 N 1.65603 * 104.45089 * 186.09670 * 11 10 9 15 15 C 1.47129 * 121.04309 * 89.99733 * 14 11 10 16 16 C 1.53228 * 108.71320 * 127.83503 * 15 14 11 17 17 O 1.43091 * 109.34495 * 54.07078 * 16 15 14 18 18 C 1.42593 * 113.96031 * 299.89412 * 17 16 15 19 19 C 1.53364 * 113.66771 * 287.42830 * 18 17 16 20 20 C 1.53852 * 86.96144 * 270.35364 * 19 18 17 21 21 C 1.53341 * 113.70884 * 189.35274 * 18 17 16 22 22 C 1.47317 * 121.04783 * 269.72304 * 14 11 10 23 23 C 1.53003 * 117.49961 * 131.56683 * 9 7 2 24 24 C 1.52998 * 59.99972 * 252.51137 * 23 9 7 25 25 H 0.97000 * 120.00247 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46774 * 54.57522 * 10 9 7 27 27 H 1.09002 * 109.47042 * 174.57760 * 10 9 7 28 28 H 1.08999 * 109.59874 * 247.60707 * 15 14 11 29 29 H 1.09008 * 109.59724 * 8.07012 * 15 14 11 30 30 H 1.08998 * 109.49112 * 174.02986 * 16 15 14 31 31 H 1.08998 * 109.48890 * 294.08251 * 16 15 14 32 32 H 1.09004 * 113.63888 * 24.87412 * 19 18 17 33 33 H 1.08998 * 113.63673 * 155.83463 * 19 18 17 34 34 H 1.09002 * 113.60285 * 220.31044 * 20 19 18 35 35 H 1.08990 * 113.68078 * 89.45212 * 20 19 18 36 36 H 1.08997 * 113.63266 * 204.12700 * 21 18 17 37 37 H 1.09000 * 113.63519 * 335.00282 * 21 18 17 38 38 H 1.08996 * 109.74770 * 348.15104 * 22 14 11 39 39 H 1.09004 * 109.74669 * 108.87299 * 22 14 11 40 40 H 1.08998 * 117.49454 * 0.02562 * 23 9 7 41 41 H 1.09000 * 117.49388 * 145.02090 * 23 9 7 42 42 H 1.09004 * 117.50248 * 252.50632 * 24 23 9 43 43 H 1.09004 * 117.49808 * 107.49023 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5967 1.9887 1.3952 5 1 3.4930 1.4712 -0.7977 6 1 1.4001 2.6795 -0.5976 7 6 2.0045 -1.1940 0.0005 8 1 1.4689 -2.1269 0.0965 9 6 3.5056 -1.1975 -0.1329 10 6 4.0413 -1.0949 -1.5624 11 16 3.5729 -2.5807 -2.4917 12 8 4.1567 -3.7379 -1.9092 13 8 2.1920 -2.5455 -2.8251 14 7 4.3484 -2.4201 -3.9461 15 6 5.7048 -2.9540 -4.1457 16 6 5.7066 -3.8353 -5.3991 17 8 5.1889 -3.0885 -6.5045 18 6 3.8529 -2.6269 -6.3165 19 6 2.7998 -3.7387 -6.4003 20 6 2.7321 -3.4481 -7.9096 21 6 3.2239 -2.0280 -7.5802 22 6 3.6995 -1.7435 -5.0824 23 6 4.3013 -2.0460 0.8610 24 6 4.3149 -0.5203 0.9750 25 1 -0.4850 0.8400 -0.0004 26 1 3.6181 -0.2150 -2.0467 27 1 5.1277 -1.0091 -1.5380 28 1 6.4063 -2.1301 -4.2770 29 1 5.9945 -3.5493 -3.2797 30 1 6.7261 -4.1518 -5.6197 31 1 5.0824 -4.7123 -5.2279 32 1 3.1895 -4.7286 -6.1629 33 1 1.8768 -3.5072 -5.8689 34 1 1.7204 -3.4766 -8.3146 35 1 3.4405 -4.0295 -8.4996 36 1 2.4182 -1.3231 -7.3753 37 1 3.9545 -1.6414 -8.2908 38 1 2.6415 -1.5943 -4.8669 39 1 4.1789 -0.7809 -5.2605 40 1 3.7390 -2.6020 1.6111 41 1 5.2066 -2.5315 0.4965 42 1 5.2292 -0.0021 0.6856 43 1 3.7616 -0.0723 1.8004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000333472951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:17 Heat of formation + Delta-G solvation = -80.291646 kcal Electronic energy + Delta-G solvation = -26224.263153 eV Core-core repulsion = 22590.784061 eV Total energy + Delta-G solvation = -3633.479092 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.39783 -38.88159 -38.14287 -37.42958 -36.86787 -35.76463 -34.33026 -31.11472 -30.13197 -27.92818 -27.50033 -26.80868 -24.80692 -23.39022 -22.85224 -21.24136 -20.20134 -19.85873 -18.76879 -18.57876 -17.66270 -17.09497 -17.06999 -16.81608 -16.38392 -15.88087 -15.72573 -15.57022 -15.39801 -14.91819 -14.85652 -14.55949 -14.32974 -13.95185 -13.52744 -13.32448 -13.22921 -13.14612 -13.01868 -12.72145 -12.62788 -12.44692 -12.42664 -12.10972 -12.06415 -11.86863 -11.81376 -11.73225 -11.65176 -11.16664 -11.08632 -10.93890 -10.70154 -10.31603 -9.66539 -8.33969 -6.47791 -0.68013 1.34281 1.34812 1.47981 1.78387 2.33179 2.60367 2.88944 2.94946 3.12507 3.23647 3.46889 3.60875 3.67924 3.75804 3.88836 3.90682 4.06265 4.09774 4.27073 4.30271 4.35124 4.37022 4.47425 4.57869 4.63988 4.64144 4.75641 4.80637 4.82555 4.86343 4.94431 4.99414 5.03364 5.09287 5.18000 5.28675 5.37124 5.41717 5.51406 5.58224 6.17417 6.20447 6.63121 7.24987 8.82061 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.019130 B = 0.005047 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.323610 B = 5547.008550 C = 6151.662185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.261 1.261 5 H -0.219 1.219 6 H -0.294 1.294 7 C -0.515 4.515 8 H 0.027 0.973 9 C -0.036 4.036 10 C -0.569 4.569 11 S 2.615 3.385 12 O -0.986 6.986 13 O -0.987 6.987 14 N -1.006 6.006 15 C 0.074 3.926 16 C 0.047 3.953 17 O -0.356 6.356 18 C 0.079 3.921 19 C -0.180 4.180 20 C -0.124 4.124 21 C -0.113 4.113 22 C 0.094 3.906 23 C -0.172 4.172 24 C -0.169 4.169 25 H 0.269 0.731 26 H 0.127 0.873 27 H 0.155 0.845 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.140 0.860 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.481 -1.381 -14.568 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.172 4.172 3 Si 0.756 3.244 4 H -0.185 1.185 5 H -0.141 1.141 6 H -0.221 1.221 7 C -0.552 4.552 8 H 0.045 0.955 9 C -0.038 4.038 10 C -0.701 4.701 11 S 2.715 3.285 12 O -0.976 6.976 13 O -0.977 6.977 14 N -0.845 5.845 15 C -0.050 4.050 16 C -0.031 4.031 17 O -0.274 6.274 18 C 0.037 3.963 19 C -0.218 4.218 20 C -0.161 4.161 21 C -0.151 4.151 22 C -0.031 4.031 23 C -0.209 4.209 24 C -0.208 4.208 25 H 0.078 0.922 26 H 0.146 0.854 27 H 0.173 0.827 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.157 0.843 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.861 -2.003 -14.500 20.859 hybrid contribution -0.562 0.911 0.880 1.386 sum 14.299 -1.091 -13.619 19.777 Atomic orbital electron populations 1.70075 1.08713 1.28497 1.50300 1.25939 0.95253 1.03354 0.92668 0.85979 0.80331 0.77649 0.80424 1.18545 1.14149 1.22091 1.20422 0.89182 0.93321 1.52276 0.95490 1.18801 0.92200 1.06262 0.86565 1.30178 1.11161 1.20127 1.08676 1.04653 0.73314 0.77019 0.73560 1.93446 1.79076 1.46864 1.78214 1.93512 1.33945 1.87829 1.82429 1.57912 1.27802 1.72400 1.26364 1.22381 0.82291 0.99727 1.00628 1.23086 1.01356 0.92952 0.85730 1.87866 1.27048 1.72201 1.40271 1.22526 0.83297 0.95007 0.95475 1.23579 0.99618 0.99329 0.99238 1.22755 1.02389 0.96576 0.94362 1.22953 1.00178 0.97527 0.94455 1.22138 0.99093 0.96698 0.85179 1.23085 1.01814 0.93507 1.02506 1.23119 1.01666 0.95198 1.00791 0.92210 0.85446 0.82745 0.87874 0.87770 0.84273 0.93779 0.91989 0.90386 0.90074 0.89262 0.87501 0.88900 0.89261 0.88499 0.90073 0.86909 0.86485 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.32 13.96 21.45 0.30 -59.02 16 2 C 0.03 1.58 5.47 84.66 0.46 2.05 16 3 Si 0.93 42.04 24.81 68.60 1.70 43.74 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.22 -8.41 5.95 99.48 0.59 -7.82 16 6 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 7 C -0.51 -29.63 8.78 25.60 0.22 -29.41 16 8 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 9 C -0.04 -1.59 0.79 -52.93 -0.04 -1.63 16 10 C -0.57 -20.76 5.68 71.98 0.41 -20.35 16 11 S 2.62 102.64 5.21 -56.49 -0.29 102.35 16 12 O -0.99 -41.15 16.63 -127.65 -2.12 -43.27 16 13 O -0.99 -48.83 16.29 -127.65 -2.08 -50.91 16 14 N -1.01 -28.86 3.29 -512.75 -1.68 -30.54 16 15 C 0.07 1.59 6.61 86.34 0.57 2.16 16 16 C 0.05 0.93 6.88 72.06 0.50 1.42 16 17 O -0.36 -7.99 10.44 -148.98 -1.56 -9.54 16 18 C 0.08 1.85 1.12 -10.71 -0.01 1.84 16 19 C -0.18 -4.56 7.22 31.00 0.22 -4.34 16 20 C -0.12 -2.33 8.03 31.17 0.25 -2.08 16 21 C -0.11 -2.07 7.47 31.00 0.23 -1.84 16 22 C 0.09 2.48 5.79 86.07 0.50 2.98 16 23 C -0.17 -6.66 9.96 30.59 0.30 -6.35 16 24 C -0.17 -6.31 7.62 30.59 0.23 -6.07 16 25 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 26 H 0.13 4.60 6.73 -2.39 -0.02 4.58 16 27 H 0.15 4.03 8.09 -2.39 -0.02 4.02 16 28 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.10 2.21 6.89 -2.38 -0.02 2.20 16 30 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.04 1.00 7.11 -2.39 -0.02 0.98 16 32 H 0.06 1.63 7.18 -2.38 -0.02 1.61 16 33 H 0.08 2.27 7.93 -2.39 -0.02 2.25 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.11 1.76 8.09 -2.39 -0.02 1.74 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.09 2.70 6.65 -2.39 -0.02 2.69 16 39 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 40 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 41 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 42 H 0.12 3.42 8.14 -2.38 -0.02 3.40 16 43 H 0.08 3.24 7.28 -2.38 -0.02 3.22 16 Total: -1.00 -78.57 347.79 -1.00 -79.58 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.88 Total: 29.24 kcal Atomic # 6 Polarization: -65.47 SS G_CDS: 3.85 Total: -61.62 kcal Atomic # 7 Polarization: -88.18 SS G_CDS: -1.39 Total: -89.57 kcal Atomic # 8 Polarization: -97.96 SS G_CDS: -5.76 Total: -103.72 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.70 Total: 43.74 kcal Atomic # 16 Polarization: 102.64 SS G_CDS: -0.29 Total: 102.35 kcal Total: -78.57 -1.00 -79.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333472951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.714 kcal (2) G-P(sol) polarization free energy of solvation -78.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds