Wall clock time and date at job start Tue Mar 31 2020 11:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47647 * 2 1 4 4 C 1.50701 * 109.47390 * 120.00245 * 2 1 3 5 5 H 1.07998 * 120.00235 * 119.99639 * 4 2 1 6 6 C 1.37875 * 119.99815 * 299.99792 * 4 2 1 7 7 N 1.31519 * 120.00153 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00243 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47252 * 179.97438 * 8 6 4 10 10 H 1.48500 * 109.47141 * 300.00519 * 8 6 4 11 11 H 1.48502 * 109.46599 * 60.00394 * 8 6 4 12 12 N 1.46507 * 109.47224 * 239.99830 * 2 1 3 13 13 C 1.46494 * 120.00317 * 300.00084 * 12 2 1 14 14 C 1.34784 * 119.99825 * 120.00021 * 12 2 1 15 15 O 1.21593 * 120.00007 * 0.02562 * 14 12 2 16 16 N 1.34767 * 119.99941 * 180.02562 * 14 12 2 17 17 C 1.40187 * 120.00174 * 175.35933 * 16 14 12 18 18 C 1.39358 * 120.42115 * 34.95563 * 17 16 14 19 19 C 1.38326 * 118.42469 * 179.97438 * 18 17 16 20 20 C 1.38906 * 119.18662 * 0.02562 * 19 18 17 21 21 O 1.35760 * 119.61206 * 180.02562 * 20 19 18 22 22 C 1.42896 * 116.99942 * 180.02562 * 21 20 19 23 23 F 1.39909 * 109.46797 * 299.99474 * 22 21 20 24 24 F 1.39899 * 109.47690 * 59.99099 * 22 21 20 25 25 N 1.32201 * 120.77997 * 0.02562 * 20 19 18 26 26 C 1.31967 * 121.71488 * 359.68552 * 25 20 19 27 27 H 1.08997 * 109.47384 * 299.99856 * 1 2 3 28 28 H 1.09000 * 109.47190 * 60.00282 * 1 2 3 29 29 H 1.09000 * 109.46955 * 180.02562 * 1 2 3 30 30 H 0.97000 * 120.00439 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.46991 * 89.99396 * 13 12 2 32 32 H 1.08992 * 109.47215 * 210.00036 * 13 12 2 33 33 H 1.08999 * 109.47026 * 330.00278 * 13 12 2 34 34 H 0.97004 * 120.00056 * 355.35506 * 16 14 12 35 35 H 1.07994 * 120.79151 * 0.02562 * 18 17 16 36 36 H 1.08005 * 120.41119 * 180.02562 * 19 18 17 37 37 H 1.08997 * 109.47370 * 179.97438 * 22 21 20 38 38 H 1.08000 * 119.62685 * 180.28666 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 1.8271 -0.4199 5.2204 10 1 1.8259 -2.5203 4.0077 11 1 3.8064 -1.1208 4.0081 12 7 2.0183 -0.6907 -1.1962 13 6 1.6645 -2.0932 -1.4281 14 6 2.7932 -0.0356 -2.0834 15 8 3.0873 1.1284 -1.8907 16 7 3.2420 -0.6708 -3.1840 17 6 3.9659 0.0356 -4.1547 18 6 4.8318 1.0617 -3.7814 19 6 5.5259 1.7310 -4.7732 20 6 5.3381 1.3613 -6.0989 21 8 6.0153 2.0120 -7.0792 22 6 5.7795 1.5867 -8.4229 23 9 6.1312 0.2389 -8.5539 24 9 4.4245 1.7471 -8.7319 25 7 4.5075 0.3833 -6.4174 26 6 3.8330 -0.2810 -5.4980 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.7082 1.1608 3.4844 31 1 0.7376 -2.1444 -1.9993 32 1 2.4629 -2.5818 -1.9863 33 1 1.5295 -2.5969 -0.4709 34 1 3.0643 -1.6167 -3.3045 35 1 4.9585 1.3276 -2.7424 36 1 6.2057 2.5312 -4.5200 37 1 6.3809 2.1875 -9.1051 38 1 3.1668 -1.0772 -5.7957 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338611162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:44 Heat of formation + Delta-G solvation = -143.733219 kcal Electronic energy + Delta-G solvation = -26060.779548 eV Core-core repulsion = 21767.168694 eV Total energy + Delta-G solvation = -4293.610855 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.95866 -48.09936 -42.08007 -40.97855 -38.96496 -37.30942 -35.94607 -34.71989 -33.34471 -31.60317 -30.07708 -27.67227 -27.29344 -27.14436 -24.80233 -24.47313 -22.85863 -20.98632 -20.19401 -19.57442 -19.02073 -18.76111 -18.57856 -17.98315 -17.38731 -16.99603 -16.75607 -16.28888 -16.03268 -15.94072 -15.41472 -14.93939 -14.85039 -14.55961 -14.44651 -14.41221 -14.19263 -14.01841 -13.78858 -13.59799 -13.48926 -13.10874 -13.02160 -12.84433 -12.73229 -12.63067 -12.18057 -12.11123 -11.79020 -11.31363 -11.16065 -10.91446 -10.57011 -10.47740 -9.49994 -9.01104 -8.12931 -6.29439 -0.04736 0.12404 1.43344 1.45071 1.48429 1.53178 1.70969 2.09386 2.42830 2.67442 2.68662 3.00458 3.15421 3.20617 3.71718 3.77618 3.84654 3.91041 4.02188 4.35079 4.47486 4.60282 4.70146 4.74274 4.91286 4.97367 5.03072 5.07792 5.11441 5.40903 5.48543 5.52384 5.66741 5.87068 5.95339 6.15951 6.21791 6.61108 6.78047 7.03773 7.37153 7.58112 8.91057 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.032380 B = 0.002656 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.528491 B =10539.036754 C =10706.802945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.279 3.721 3 H 0.012 0.988 4 C -0.539 4.539 5 H 0.063 0.937 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.286 1.286 10 H -0.262 1.262 11 H -0.278 1.278 12 N -0.609 5.609 13 C 0.077 3.923 14 C 0.692 3.308 15 O -0.626 6.626 16 N -0.666 5.666 17 C 0.093 3.907 18 C -0.062 4.062 19 C -0.152 4.152 20 C 0.269 3.731 21 O -0.320 6.320 22 C 0.416 3.584 23 F -0.208 7.208 24 F -0.211 7.211 25 N -0.517 5.517 26 C 0.119 3.881 27 H 0.068 0.932 28 H 0.018 0.982 29 H 0.048 0.952 30 H 0.264 0.736 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.424 0.576 35 H 0.140 0.860 36 H 0.165 0.835 37 H 0.235 0.765 38 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.176 -4.193 -20.281 22.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.177 3.823 3 H 0.030 0.970 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.789 3.211 9 H -0.211 1.211 10 H -0.187 1.187 11 H -0.203 1.203 12 N -0.342 5.342 13 C -0.065 4.065 14 C 0.394 3.606 15 O -0.507 6.507 16 N -0.319 5.319 17 C -0.005 4.005 18 C -0.090 4.090 19 C -0.173 4.173 20 C 0.091 3.909 21 O -0.233 6.233 22 C 0.327 3.673 23 F -0.190 7.190 24 F -0.193 7.193 25 N -0.238 5.238 26 C -0.040 4.040 27 H 0.087 0.913 28 H 0.037 0.963 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.265 0.735 35 H 0.158 0.842 36 H 0.182 0.818 37 H 0.251 0.749 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 8.259 -3.351 -20.806 22.635 hybrid contribution -0.086 -0.470 1.840 1.901 sum 8.172 -3.821 -18.967 21.003 Atomic orbital electron populations 1.21891 0.97163 1.00198 0.99901 1.18468 0.91358 0.92058 0.80440 0.96974 1.21565 1.31949 1.13197 0.91028 0.91860 1.25706 0.95073 0.95615 1.01947 1.70015 1.37232 1.23881 1.24498 0.85527 0.78377 0.78994 0.78210 1.21138 1.18687 1.20314 1.47466 1.50721 1.13418 1.22629 1.21845 1.01032 0.80434 1.03189 1.16134 0.79499 0.84497 0.80446 1.90836 1.64269 1.17806 1.77753 1.42435 1.56697 1.13348 1.19377 1.18614 0.94993 0.97304 0.89623 1.21684 0.91903 0.94548 1.00908 1.21154 1.03771 1.03623 0.88708 1.19712 0.92296 0.91182 0.87745 1.86787 1.63091 1.57795 1.15609 1.24136 0.79635 0.79946 0.83621 1.93069 1.91599 1.38991 1.95353 1.93070 1.38383 1.95283 1.92515 1.67352 1.09534 1.08636 1.38301 1.22508 0.97042 0.99229 0.85241 0.91335 0.96266 0.93322 0.92643 0.91361 0.89570 0.90634 0.73520 0.84206 0.81785 0.74925 0.78843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.26 8.97 71.98 0.65 -5.61 16 2 C 0.28 14.09 2.64 44.24 0.12 14.21 16 3 H 0.01 0.75 6.90 -2.39 -0.02 0.73 16 4 C -0.54 -28.36 7.99 25.60 0.20 -28.15 16 5 H 0.06 3.20 7.33 -2.91 -0.02 3.18 16 6 C 0.02 0.87 5.30 84.65 0.45 1.32 16 7 N -0.92 -52.04 11.32 21.45 0.24 -51.80 16 8 Si 0.96 42.08 29.54 68.60 2.03 44.11 16 9 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 10 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 12 N -0.61 -24.49 2.75 -844.85 -2.33 -26.82 16 13 C 0.08 2.19 9.24 127.77 1.18 3.37 16 14 C 0.69 27.71 8.14 179.06 1.46 29.17 16 15 O -0.63 -30.69 13.15 -4.01 -0.05 -30.75 16 16 N -0.67 -19.03 5.24 -316.78 -1.66 -20.69 16 17 C 0.09 2.63 6.32 38.17 0.24 2.87 16 18 C -0.06 -1.93 8.80 22.56 0.20 -1.73 16 19 C -0.15 -3.99 10.03 22.45 0.23 -3.77 16 20 C 0.27 7.05 7.19 84.80 0.61 7.66 16 21 O -0.32 -6.81 10.41 -90.86 -0.95 -7.75 16 22 C 0.42 6.62 6.06 113.37 0.69 7.31 16 23 F -0.21 -4.25 16.57 44.97 0.75 -3.51 16 24 F -0.21 -4.54 16.57 44.97 0.75 -3.80 16 25 N -0.52 -13.78 8.06 -308.44 -2.49 -16.26 16 26 C 0.12 2.86 11.11 84.77 0.94 3.80 16 27 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 2.06 7.67 -2.39 -0.02 2.04 16 30 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 1.73 6.30 -2.39 -0.02 1.72 16 33 H 0.07 2.34 7.02 -2.39 -0.02 2.33 16 34 H 0.42 8.60 6.52 -92.71 -0.60 7.99 16 35 H 0.14 5.06 6.32 -2.91 -0.02 5.04 16 36 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 37 H 0.24 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.19 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -73.70 329.69 3.77 -69.93 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.52 Total: 16.88 kcal Atomic # 6 Polarization: 23.49 SS G_CDS: 6.96 Total: 30.44 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -6.23 Total: -115.56 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -1.00 Total: -38.50 kcal Atomic # 9 Polarization: -8.80 SS G_CDS: 1.49 Total: -7.31 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -73.70 3.77 -69.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338611162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.800 kcal (2) G-P(sol) polarization free energy of solvation -73.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds