Wall clock time and date at job start Tue Mar 31 2020 11:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.50704 * 109.47295 * 65.00435 * 4 2 1 6 6 O 1.21279 * 119.99596 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00129 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99830 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.46864 * 179.97438 * 8 7 5 10 10 H 1.08002 * 119.99956 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99647 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00075 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99647 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.47011 * 90.00487 * 13 11 9 15 15 H 1.48501 * 109.46670 * 210.00285 * 13 11 9 16 16 H 1.48497 * 109.47187 * 330.00132 * 13 11 9 17 17 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 18 18 C 1.38232 * 120.00067 * 59.72133 * 17 2 1 19 19 C 1.38245 * 119.99835 * 179.78890 * 18 17 2 20 20 C 1.38233 * 119.99658 * 0.44465 * 19 18 17 21 21 C 1.50702 * 119.99839 * 179.83388 * 20 19 18 22 22 F 1.39903 * 109.47223 * 269.97774 * 21 20 19 23 23 F 1.39899 * 109.47218 * 29.97882 * 21 20 19 24 24 F 1.39898 * 109.47400 * 149.97466 * 21 20 19 25 25 C 1.38230 * 120.00309 * 359.81021 * 20 19 18 26 26 C 1.38230 * 120.00189 * 359.97438 * 25 20 19 27 27 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46738 * 184.99930 * 4 2 1 31 31 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 32 32 H 0.97003 * 119.99614 * 359.97438 * 7 5 4 33 33 H 1.08990 * 109.47208 * 300.00469 * 8 7 5 34 34 H 1.09003 * 109.46329 * 60.00266 * 8 7 5 35 35 H 0.96999 * 120.00103 * 179.97438 * 12 11 9 36 36 H 1.07998 * 120.00648 * 0.02562 * 18 17 2 37 37 H 1.07993 * 119.99881 * 180.27524 * 19 18 17 38 38 H 1.08007 * 119.99922 * 180.02562 * 25 20 19 39 39 H 1.08000 * 120.00524 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0110 1.0870 -2.3633 7 7 1.9852 -0.3914 -3.7002 8 6 1.5972 0.3650 -4.8933 9 6 2.1006 -0.3448 -6.1238 10 1 2.6539 -1.2672 -6.0267 11 6 1.8540 0.1830 -7.3734 12 7 1.1798 1.3060 -7.4916 13 14 2.4773 -0.6972 -8.8986 14 1 1.4469 -1.6553 -9.3730 15 1 2.7563 0.2980 -9.9650 16 1 3.7243 -1.4336 -8.5702 17 6 2.0324 -0.7105 1.2304 18 6 1.6937 -2.0322 1.4520 19 6 2.1582 -2.6852 2.5785 20 6 2.9537 -2.0136 3.4879 21 6 3.4569 -2.7243 4.7179 22 9 2.5365 -2.5631 5.7590 23 9 3.6116 -4.0865 4.4389 24 9 4.6900 -2.1833 5.0975 25 6 3.2880 -0.6904 3.2690 26 6 2.8273 -0.0387 2.1403 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1263 -0.7995 -1.2056 31 1 1.6053 -1.7198 -1.2952 32 1 2.4897 -1.2150 -3.7907 33 1 0.5109 0.4426 -4.9370 34 1 2.0313 1.3638 -4.8473 35 1 1.0066 1.6775 -8.3707 36 1 1.0695 -2.5559 0.7432 37 1 1.8973 -3.7191 2.7494 38 1 3.9099 -0.1658 3.9793 39 1 3.0881 0.9953 1.9694 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353098724.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:32 Heat of formation + Delta-G solvation = -185.833689 kcal Electronic energy + Delta-G solvation = -25087.883660 eV Core-core repulsion = 20772.527230 eV Total energy + Delta-G solvation = -4315.356430 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.44626 -47.96509 -47.90918 -40.16111 -38.86475 -35.45350 -34.14544 -32.37519 -31.48561 -31.02630 -28.48183 -26.58172 -26.19619 -23.48475 -23.08231 -22.31423 -20.50540 -19.52312 -18.80815 -18.75029 -18.63798 -17.22827 -16.20443 -15.73710 -15.33188 -15.11691 -15.02879 -14.88956 -14.75959 -14.63361 -14.37803 -14.28364 -14.16140 -14.07191 -13.80484 -13.55434 -13.32216 -13.21368 -12.62932 -12.44492 -12.13690 -11.96868 -11.71336 -11.60324 -11.19872 -11.04835 -10.98554 -10.87571 -10.74997 -10.33965 -9.43351 -9.37349 -9.29526 -9.00122 -8.76572 -7.91916 -6.20047 -4.27097 0.61697 0.96495 2.37331 3.16395 3.21721 3.28139 3.30353 3.31871 3.42902 3.73151 3.99353 4.13583 4.31630 4.46133 4.53010 4.62922 4.88598 5.01326 5.06312 5.13951 5.16390 5.25178 5.46532 5.58466 5.66246 5.67162 5.75951 5.85448 5.87905 6.00762 6.10852 6.37628 6.44626 6.54009 7.26604 7.40032 7.47744 7.62755 7.93651 8.58529 8.74122 9.05891 9.39791 10.90111 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.028165 B = 0.002160 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.903980 B =12962.352549 C =13449.067386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.040 4.040 3 H 0.091 0.909 4 C -0.136 4.136 5 C 0.498 3.502 6 O -0.554 6.554 7 N -0.713 5.713 8 C 0.249 3.751 9 C -0.544 4.544 10 H 0.063 0.937 11 C 0.063 3.937 12 N -0.885 5.885 13 Si 0.904 3.096 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.035 4.035 18 C -0.116 4.116 19 C -0.069 4.069 20 C -0.195 4.195 21 C 0.509 3.491 22 F -0.179 7.179 23 F -0.178 7.178 24 F -0.179 7.179 25 C -0.068 4.068 26 C -0.118 4.118 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.391 0.609 33 H 0.027 0.973 34 H 0.026 0.974 35 H 0.266 0.734 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 -8.209 23.699 25.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.059 4.059 3 H 0.110 0.890 4 C -0.176 4.176 5 C 0.283 3.717 6 O -0.434 6.434 7 N -0.361 5.361 8 C 0.129 3.871 9 C -0.582 4.582 10 H 0.081 0.919 11 C -0.140 4.140 12 N -0.523 5.523 13 Si 0.731 3.269 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.197 1.197 17 C -0.035 4.035 18 C -0.134 4.134 19 C -0.087 4.087 20 C -0.196 4.196 21 C 0.455 3.545 22 F -0.160 7.160 23 F -0.160 7.160 24 F -0.160 7.160 25 C -0.087 4.087 26 C -0.135 4.135 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.223 0.777 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.168 -7.346 23.633 24.951 hybrid contribution 0.717 -1.017 -0.691 1.424 sum 3.885 -8.363 22.942 24.726 Atomic orbital electron populations 1.21975 0.93176 1.01806 1.03679 1.19988 0.97187 0.99457 0.89293 0.89037 1.21760 1.02667 1.00174 0.93001 1.20390 0.80412 0.86019 0.84881 1.90626 1.41004 1.25008 1.86741 1.46501 1.55437 1.27299 1.06857 1.19100 0.96193 0.91854 0.79991 1.21228 1.36954 1.09288 0.90768 0.91922 1.24954 0.94878 0.94938 0.99257 1.69969 1.38967 1.18998 1.24342 0.86417 0.79157 0.79258 0.82100 1.20446 1.20987 1.19746 1.20322 0.93795 0.93866 0.95553 1.21073 1.00470 0.94475 0.97380 1.20923 0.94673 1.00003 0.93069 1.19916 1.06704 0.96617 0.96359 1.18344 0.75310 0.76938 0.83917 1.93224 1.66468 1.95315 1.60984 1.93187 1.95532 1.33618 1.93633 1.93186 1.44618 1.85753 1.92438 1.20918 0.97646 0.92477 0.97614 1.21147 0.98045 1.00672 0.93685 0.92934 0.89398 0.93131 0.89253 0.89222 0.77702 0.95546 0.95562 0.92426 0.84631 0.84806 0.84817 0.84615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.74 37.16 0.32 -1.49 16 2 C -0.04 -0.47 2.21 -91.77 -0.20 -0.67 16 3 H 0.09 1.15 7.69 -51.93 -0.40 0.75 16 4 C -0.14 -1.68 4.92 -27.88 -0.14 -1.82 16 5 C 0.50 9.06 7.55 -10.98 -0.08 8.98 16 6 O -0.55 -12.12 13.96 5.56 0.08 -12.04 16 7 N -0.71 -14.24 5.55 -61.47 -0.34 -14.58 16 8 C 0.25 6.42 5.43 -5.19 -0.03 6.40 16 9 C -0.54 -14.47 9.28 -34.44 -0.32 -14.79 16 10 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -25.73 13.29 55.43 0.74 -25.00 16 13 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 17 C -0.04 -0.34 4.78 -104.62 -0.50 -0.84 16 18 C -0.12 -1.03 8.76 -39.58 -0.35 -1.37 16 19 C -0.07 -0.59 9.40 -39.58 -0.37 -0.96 16 20 C -0.19 -1.78 5.45 -104.63 -0.57 -2.35 16 21 C 0.51 4.70 3.36 36.01 0.12 4.82 16 22 F -0.18 -1.74 17.30 2.25 0.04 -1.70 16 23 F -0.18 -1.69 16.46 2.25 0.04 -1.66 16 24 F -0.18 -1.69 16.46 2.25 0.04 -1.66 16 25 C -0.07 -0.59 9.40 -39.59 -0.37 -0.96 16 26 C -0.12 -1.05 9.67 -39.58 -0.38 -1.44 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 1.35 5.95 -51.93 -0.31 1.05 16 29 H 0.05 0.53 7.38 -51.93 -0.38 0.15 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 32 H 0.39 6.66 8.32 -40.82 -0.34 6.32 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.14 1.02 7.16 -52.49 -0.38 0.64 16 37 H 0.13 0.94 7.60 -52.49 -0.40 0.54 16 38 H 0.13 0.94 7.60 -52.48 -0.40 0.54 16 39 H 0.14 1.03 7.95 -52.49 -0.42 0.62 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -30.86 344.01 -6.86 -37.72 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -4.64 Total: 3.06 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.97 Total: -4.86 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.40 Total: -39.58 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.08 Total: -12.04 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.11 Total: -5.02 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.86 -6.86 -37.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353098724.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.118 kcal (2) G-P(sol) polarization free energy of solvation -30.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds