Wall clock time and date at job start Tue Mar 31 2020 11:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.50704 * 109.47295 * 65.00435 * 4 2 1 6 6 O 1.21279 * 119.99596 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00129 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99830 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.46864 * 179.97438 * 8 7 5 10 10 H 1.08002 * 119.99956 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99647 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00075 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99647 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.47011 * 90.00487 * 13 11 9 15 15 H 1.48501 * 109.46670 * 210.00285 * 13 11 9 16 16 H 1.48497 * 109.47187 * 330.00132 * 13 11 9 17 17 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 18 18 C 1.38232 * 120.00067 * 59.72133 * 17 2 1 19 19 C 1.38245 * 119.99835 * 179.78890 * 18 17 2 20 20 C 1.38233 * 119.99658 * 0.44465 * 19 18 17 21 21 C 1.50702 * 119.99839 * 179.83388 * 20 19 18 22 22 F 1.39903 * 109.47223 * 269.97774 * 21 20 19 23 23 F 1.39899 * 109.47218 * 29.97882 * 21 20 19 24 24 F 1.39898 * 109.47400 * 149.97466 * 21 20 19 25 25 C 1.38230 * 120.00309 * 359.81021 * 20 19 18 26 26 C 1.38230 * 120.00189 * 359.97438 * 25 20 19 27 27 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46738 * 184.99930 * 4 2 1 31 31 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 32 32 H 0.97003 * 119.99614 * 359.97438 * 7 5 4 33 33 H 1.08990 * 109.47208 * 300.00469 * 8 7 5 34 34 H 1.09003 * 109.46329 * 60.00266 * 8 7 5 35 35 H 0.96999 * 120.00103 * 179.97438 * 12 11 9 36 36 H 1.07998 * 120.00648 * 0.02562 * 18 17 2 37 37 H 1.07993 * 119.99881 * 180.27524 * 19 18 17 38 38 H 1.08007 * 119.99922 * 180.02562 * 25 20 19 39 39 H 1.08000 * 120.00524 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0110 1.0870 -2.3633 7 7 1.9852 -0.3914 -3.7002 8 6 1.5972 0.3650 -4.8933 9 6 2.1006 -0.3448 -6.1238 10 1 2.6539 -1.2672 -6.0267 11 6 1.8540 0.1830 -7.3734 12 7 1.1798 1.3060 -7.4916 13 14 2.4773 -0.6972 -8.8986 14 1 1.4469 -1.6553 -9.3730 15 1 2.7563 0.2980 -9.9650 16 1 3.7243 -1.4336 -8.5702 17 6 2.0324 -0.7105 1.2304 18 6 1.6937 -2.0322 1.4520 19 6 2.1582 -2.6852 2.5785 20 6 2.9537 -2.0136 3.4879 21 6 3.4569 -2.7243 4.7179 22 9 2.5365 -2.5631 5.7590 23 9 3.6116 -4.0865 4.4389 24 9 4.6900 -2.1833 5.0975 25 6 3.2880 -0.6904 3.2690 26 6 2.8273 -0.0387 2.1403 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1263 -0.7995 -1.2056 31 1 1.6053 -1.7198 -1.2952 32 1 2.4897 -1.2150 -3.7907 33 1 0.5109 0.4426 -4.9370 34 1 2.0313 1.3638 -4.8473 35 1 1.0066 1.6775 -8.3707 36 1 1.0695 -2.5559 0.7432 37 1 1.8973 -3.7191 2.7494 38 1 3.9099 -0.1658 3.9793 39 1 3.0881 0.9953 1.9694 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353098724.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:31 Heat of formation + Delta-G solvation = -203.751077 kcal Electronic energy + Delta-G solvation = -25088.660616 eV Core-core repulsion = 20772.527230 eV Total energy + Delta-G solvation = -4316.133386 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.16783 -48.68581 -48.63945 -41.08865 -40.15734 -36.58258 -35.84381 -34.32704 -32.16638 -31.83803 -30.00530 -28.13272 -26.99006 -24.78407 -24.07813 -23.44105 -21.66573 -20.85026 -19.51454 -19.45488 -19.37349 -18.86282 -17.67204 -17.07510 -16.67114 -16.29808 -16.14741 -15.87392 -15.73942 -15.48290 -15.37949 -15.09850 -14.90637 -14.80061 -14.75372 -14.58339 -14.45825 -14.26754 -14.03539 -13.84176 -13.54979 -13.28821 -12.90996 -12.77395 -12.64614 -12.39331 -12.23248 -12.12522 -11.94391 -11.64639 -11.47121 -10.79213 -10.60824 -10.01783 -9.97798 -9.76187 -8.28660 -6.44848 -0.08097 0.32152 1.43642 1.45576 1.56770 1.66887 1.84314 2.32885 2.46363 2.66708 2.74216 3.03257 3.06392 3.42691 3.65838 3.72176 3.92791 3.99023 4.14448 4.24432 4.36739 4.43810 4.52038 4.70933 4.75664 4.81553 4.98499 5.01078 5.15268 5.19274 5.20666 5.24821 5.27154 5.44205 5.53237 5.61738 5.74082 5.80664 5.87480 6.67106 6.96707 7.24988 7.56247 8.83387 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.028165 B = 0.002160 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.903980 B =12962.352549 C =13449.067386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.034 4.034 3 H 0.076 0.924 4 C -0.121 4.121 5 C 0.494 3.506 6 O -0.595 6.595 7 N -0.711 5.711 8 C 0.266 3.734 9 C -0.555 4.555 10 H 0.083 0.917 11 C 0.003 3.997 12 N -0.931 5.931 13 Si 0.983 3.017 14 H -0.271 1.271 15 H -0.285 1.285 16 H -0.256 1.256 17 C -0.041 4.041 18 C -0.115 4.115 19 C -0.070 4.070 20 C -0.201 4.201 21 C 0.511 3.489 22 F -0.183 7.183 23 F -0.180 7.180 24 F -0.181 7.181 25 C -0.071 4.071 26 C -0.121 4.121 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.408 0.592 33 H -0.013 1.013 34 H -0.014 1.014 35 H 0.268 0.732 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.908 -10.643 24.385 27.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.053 4.053 3 H 0.094 0.906 4 C -0.161 4.161 5 C 0.282 3.718 6 O -0.477 6.477 7 N -0.361 5.361 8 C 0.143 3.857 9 C -0.593 4.593 10 H 0.101 0.899 11 C -0.197 4.197 12 N -0.570 5.570 13 Si 0.806 3.194 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.179 1.179 17 C -0.041 4.041 18 C -0.133 4.133 19 C -0.088 4.088 20 C -0.202 4.202 21 C 0.457 3.543 22 F -0.164 7.164 23 F -0.161 7.161 24 F -0.162 7.162 25 C -0.089 4.089 26 C -0.139 4.139 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.132 0.868 31 H 0.138 0.862 32 H 0.243 0.757 33 H 0.005 0.995 34 H 0.004 0.996 35 H 0.077 0.923 36 H 0.169 0.831 37 H 0.168 0.832 38 H 0.165 0.835 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.417 -9.817 24.361 26.633 hybrid contribution 0.305 -0.218 -0.797 0.881 sum 4.722 -10.035 23.564 26.043 Atomic orbital electron populations 1.21911 0.93841 1.02520 1.02124 1.19849 0.96627 0.98912 0.89943 0.90604 1.21763 1.04284 1.00354 0.89661 1.21473 0.78857 0.85697 0.85762 1.90619 1.42534 1.27151 1.87374 1.46257 1.56187 1.27676 1.06004 1.18504 0.93452 0.90966 0.82756 1.21638 1.36786 1.09870 0.91007 0.89866 1.26053 0.94849 0.95595 1.03154 1.70132 1.40540 1.20992 1.25313 0.85184 0.79132 0.77898 0.77185 1.19613 1.21074 1.17935 1.20107 0.94733 0.94312 0.94945 1.21231 1.00309 0.94022 0.97713 1.21127 0.94208 1.00779 0.92702 1.20038 1.06925 0.96893 0.96362 1.18360 0.75139 0.76868 0.83902 1.93217 1.66612 1.95333 1.61239 1.93184 1.95534 1.33763 1.93625 1.93182 1.44778 1.85778 1.92480 1.21084 0.97663 0.92453 0.97725 1.21284 0.97804 1.01207 0.93620 0.92136 0.93235 0.91265 0.86845 0.86206 0.75662 0.99492 0.99608 0.92303 0.83057 0.83231 0.83498 0.83748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.74 71.98 0.63 -2.83 16 2 C -0.03 -0.75 2.21 -11.54 -0.03 -0.77 16 3 H 0.08 1.89 7.69 -2.39 -0.02 1.87 16 4 C -0.12 -2.73 4.92 29.85 0.15 -2.58 16 5 C 0.49 18.02 7.55 87.66 0.66 18.68 16 6 O -0.59 -27.13 13.96 -3.03 -0.04 -27.17 16 7 N -0.71 -28.50 5.55 -466.78 -2.59 -31.09 16 8 C 0.27 14.28 5.43 85.63 0.46 14.74 16 9 C -0.56 -29.66 9.28 25.60 0.24 -29.43 16 10 H 0.08 4.00 7.60 -2.91 -0.02 3.98 16 11 C 0.00 0.17 5.46 84.65 0.46 0.63 16 12 N -0.93 -55.67 13.29 21.45 0.28 -55.38 16 13 Si 0.98 41.76 29.54 68.60 2.03 43.78 16 14 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 15 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 16 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 17 C -0.04 -0.70 4.78 -19.87 -0.09 -0.79 16 18 C -0.12 -1.67 8.76 22.27 0.20 -1.47 16 19 C -0.07 -1.00 9.40 22.27 0.21 -0.79 16 20 C -0.20 -3.20 5.45 -19.87 -0.11 -3.31 16 21 C 0.51 8.47 3.36 71.24 0.24 8.71 16 22 F -0.18 -3.27 17.30 44.97 0.78 -2.49 16 23 F -0.18 -3.06 16.46 44.97 0.74 -2.32 16 24 F -0.18 -3.12 16.46 44.97 0.74 -2.38 16 25 C -0.07 -1.08 9.40 22.27 0.21 -0.87 16 26 C -0.12 -1.93 9.67 22.27 0.22 -1.71 16 27 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.57 5.95 -2.39 -0.01 1.55 16 29 H 0.07 1.33 7.38 -2.39 -0.02 1.31 16 30 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.12 2.05 7.58 -2.39 -0.02 2.03 16 32 H 0.41 13.32 8.32 -92.71 -0.77 12.55 16 33 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 34 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 35 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 36 H 0.15 1.68 7.16 -2.91 -0.02 1.65 16 37 H 0.15 1.62 7.60 -2.91 -0.02 1.60 16 38 H 0.15 1.75 7.60 -2.91 -0.02 1.73 16 39 H 0.14 1.97 7.95 -2.91 -0.02 1.95 16 Total: -1.00 -69.54 344.01 5.70 -63.84 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.32 Total: 14.99 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 3.44 Total: -1.78 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -2.30 Total: -86.47 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.04 Total: -27.17 kcal Atomic # 9 Polarization: -9.45 SS G_CDS: 2.26 Total: -7.19 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Total: -69.54 5.70 -63.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353098724.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.909 kcal (2) G-P(sol) polarization free energy of solvation -69.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds