Wall clock time and date at job start Tue Mar 31 2020 11:11:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09000 * 109.47050 * 2 1
4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3
5 5 C 1.50704 * 109.47295 * 65.00435 * 4 2 1
6 6 O 1.21279 * 119.99596 * 359.97438 * 5 4 2
7 7 N 1.34778 * 120.00129 * 179.97438 * 5 4 2
8 8 C 1.46502 * 119.99830 * 179.97438 * 7 5 4
9 9 C 1.50702 * 109.46864 * 179.97438 * 8 7 5
10 10 H 1.08002 * 119.99956 * 0.02562 * 9 8 7
11 11 C 1.37876 * 119.99647 * 179.97438 * 9 8 7
12 12 N 1.31512 * 120.00075 * 0.02562 * 11 9 8
13 13 Si 1.86803 * 119.99647 * 180.02562 * 11 9 8
14 14 H 1.48491 * 109.47011 * 90.00487 * 13 11 9
15 15 H 1.48501 * 109.46670 * 210.00285 * 13 11 9
16 16 H 1.48497 * 109.47187 * 330.00132 * 13 11 9
17 17 C 1.50697 * 109.47239 * 120.00336 * 2 1 3
18 18 C 1.38232 * 120.00067 * 59.72133 * 17 2 1
19 19 C 1.38245 * 119.99835 * 179.78890 * 18 17 2
20 20 C 1.38233 * 119.99658 * 0.44465 * 19 18 17
21 21 C 1.50702 * 119.99839 * 179.83388 * 20 19 18
22 22 F 1.39903 * 109.47223 * 269.97774 * 21 20 19
23 23 F 1.39899 * 109.47218 * 29.97882 * 21 20 19
24 24 F 1.39898 * 109.47400 * 149.97466 * 21 20 19
25 25 C 1.38230 * 120.00309 * 359.81021 * 20 19 18
26 26 C 1.38230 * 120.00189 * 359.97438 * 25 20 19
27 27 H 1.09001 * 109.47002 * 299.99734 * 1 2 3
28 28 H 1.08993 * 109.46955 * 60.00171 * 1 2 3
29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.46738 * 184.99930 * 4 2 1
31 31 H 1.08994 * 109.47465 * 305.00017 * 4 2 1
32 32 H 0.97003 * 119.99614 * 359.97438 * 7 5 4
33 33 H 1.08990 * 109.47208 * 300.00469 * 8 7 5
34 34 H 1.09003 * 109.46329 * 60.00266 * 8 7 5
35 35 H 0.96999 * 120.00103 * 179.97438 * 12 11 9
36 36 H 1.07998 * 120.00648 * 0.02562 * 18 17 2
37 37 H 1.07993 * 119.99881 * 180.27524 * 19 18 17
38 38 H 1.08007 * 119.99922 * 180.02562 * 25 20 19
39 39 H 1.08000 * 120.00524 * 179.97438 * 26 25 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0399 -0.7213 -1.2493
5 6 1.6413 0.0571 -2.4766
6 8 1.0110 1.0870 -2.3633
7 7 1.9852 -0.3914 -3.7002
8 6 1.5972 0.3650 -4.8933
9 6 2.1006 -0.3448 -6.1238
10 1 2.6539 -1.2672 -6.0267
11 6 1.8540 0.1830 -7.3734
12 7 1.1798 1.3060 -7.4916
13 14 2.4773 -0.6972 -8.8986
14 1 1.4469 -1.6553 -9.3730
15 1 2.7563 0.2980 -9.9650
16 1 3.7243 -1.4336 -8.5702
17 6 2.0324 -0.7105 1.2304
18 6 1.6937 -2.0322 1.4520
19 6 2.1582 -2.6852 2.5785
20 6 2.9537 -2.0136 3.4879
21 6 3.4569 -2.7243 4.7179
22 9 2.5365 -2.5631 5.7590
23 9 3.6116 -4.0865 4.4389
24 9 4.6900 -2.1833 5.0975
25 6 3.2880 -0.6904 3.2690
26 6 2.8273 -0.0387 2.1403
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 0.5138 -0.8899
29 1 -0.3633 -1.0277 -0.0005
30 1 3.1263 -0.7995 -1.2056
31 1 1.6053 -1.7198 -1.2952
32 1 2.4897 -1.2150 -3.7907
33 1 0.5109 0.4426 -4.9370
34 1 2.0313 1.3638 -4.8473
35 1 1.0066 1.6775 -8.3707
36 1 1.0695 -2.5559 0.7432
37 1 1.8973 -3.7191 2.7494
38 1 3.9099 -0.1658 3.9793
39 1 3.0881 0.9953 1.9694
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000353098724.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:11:31
Heat of formation + Delta-G solvation = -203.751077 kcal
Electronic energy + Delta-G solvation = -25088.660616 eV
Core-core repulsion = 20772.527230 eV
Total energy + Delta-G solvation = -4316.133386 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.119 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-51.16783 -48.68581 -48.63945 -41.08865 -40.15734 -36.58258 -35.84381 -34.32704
-32.16638 -31.83803 -30.00530 -28.13272 -26.99006 -24.78407 -24.07813 -23.44105
-21.66573 -20.85026 -19.51454 -19.45488 -19.37349 -18.86282 -17.67204 -17.07510
-16.67114 -16.29808 -16.14741 -15.87392 -15.73942 -15.48290 -15.37949 -15.09850
-14.90637 -14.80061 -14.75372 -14.58339 -14.45825 -14.26754 -14.03539 -13.84176
-13.54979 -13.28821 -12.90996 -12.77395 -12.64614 -12.39331 -12.23248 -12.12522
-11.94391 -11.64639 -11.47121 -10.79213 -10.60824 -10.01783 -9.97798 -9.76187
-8.28660 -6.44848 -0.08097 0.32152 1.43642 1.45576 1.56770 1.66887
1.84314 2.32885 2.46363 2.66708 2.74216 3.03257 3.06392 3.42691
3.65838 3.72176 3.92791 3.99023 4.14448 4.24432 4.36739 4.43810
4.52038 4.70933 4.75664 4.81553 4.98499 5.01078 5.15268 5.19274
5.20666 5.24821 5.27154 5.44205 5.53237 5.61738 5.74082 5.80664
5.87480 6.67106 6.96707 7.24988 7.56247 8.83387
Molecular weight = 315.12amu
Principal moments of inertia in cm(-1)
A = 0.028165 B = 0.002160 C = 0.002081
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 993.903980 B =12962.352549 C =13449.067386
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.034 4.034
3 H 0.076 0.924
4 C -0.121 4.121
5 C 0.494 3.506
6 O -0.595 6.595
7 N -0.711 5.711
8 C 0.266 3.734
9 C -0.555 4.555
10 H 0.083 0.917
11 C 0.003 3.997
12 N -0.931 5.931
13 Si 0.983 3.017
14 H -0.271 1.271
15 H -0.285 1.285
16 H -0.256 1.256
17 C -0.041 4.041
18 C -0.115 4.115
19 C -0.070 4.070
20 C -0.201 4.201
21 C 0.511 3.489
22 F -0.183 7.183
23 F -0.180 7.180
24 F -0.181 7.181
25 C -0.071 4.071
26 C -0.121 4.121
27 H 0.060 0.940
28 H 0.049 0.951
29 H 0.068 0.932
30 H 0.113 0.887
31 H 0.120 0.880
32 H 0.408 0.592
33 H -0.013 1.013
34 H -0.014 1.014
35 H 0.268 0.732
36 H 0.152 0.848
37 H 0.150 0.850
38 H 0.147 0.853
39 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.908 -10.643 24.385 27.055
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.053 4.053
3 H 0.094 0.906
4 C -0.161 4.161
5 C 0.282 3.718
6 O -0.477 6.477
7 N -0.361 5.361
8 C 0.143 3.857
9 C -0.593 4.593
10 H 0.101 0.899
11 C -0.197 4.197
12 N -0.570 5.570
13 Si 0.806 3.194
14 H -0.196 1.196
15 H -0.211 1.211
16 H -0.179 1.179
17 C -0.041 4.041
18 C -0.133 4.133
19 C -0.088 4.088
20 C -0.202 4.202
21 C 0.457 3.543
22 F -0.164 7.164
23 F -0.161 7.161
24 F -0.162 7.162
25 C -0.089 4.089
26 C -0.139 4.139
27 H 0.079 0.921
28 H 0.068 0.932
29 H 0.087 0.913
30 H 0.132 0.868
31 H 0.138 0.862
32 H 0.243 0.757
33 H 0.005 0.995
34 H 0.004 0.996
35 H 0.077 0.923
36 H 0.169 0.831
37 H 0.168 0.832
38 H 0.165 0.835
39 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges 4.417 -9.817 24.361 26.633
hybrid contribution 0.305 -0.218 -0.797 0.881
sum 4.722 -10.035 23.564 26.043
Atomic orbital electron populations
1.21911 0.93841 1.02520 1.02124 1.19849 0.96627 0.98912 0.89943
0.90604 1.21763 1.04284 1.00354 0.89661 1.21473 0.78857 0.85697
0.85762 1.90619 1.42534 1.27151 1.87374 1.46257 1.56187 1.27676
1.06004 1.18504 0.93452 0.90966 0.82756 1.21638 1.36786 1.09870
0.91007 0.89866 1.26053 0.94849 0.95595 1.03154 1.70132 1.40540
1.20992 1.25313 0.85184 0.79132 0.77898 0.77185 1.19613 1.21074
1.17935 1.20107 0.94733 0.94312 0.94945 1.21231 1.00309 0.94022
0.97713 1.21127 0.94208 1.00779 0.92702 1.20038 1.06925 0.96893
0.96362 1.18360 0.75139 0.76868 0.83902 1.93217 1.66612 1.95333
1.61239 1.93184 1.95534 1.33763 1.93625 1.93182 1.44778 1.85778
1.92480 1.21084 0.97663 0.92453 0.97725 1.21284 0.97804 1.01207
0.93620 0.92136 0.93235 0.91265 0.86845 0.86206 0.75662 0.99492
0.99608 0.92303 0.83057 0.83231 0.83498 0.83748
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.46 8.74 71.98 0.63 -2.83 16
2 C -0.03 -0.75 2.21 -11.54 -0.03 -0.77 16
3 H 0.08 1.89 7.69 -2.39 -0.02 1.87 16
4 C -0.12 -2.73 4.92 29.85 0.15 -2.58 16
5 C 0.49 18.02 7.55 87.66 0.66 18.68 16
6 O -0.59 -27.13 13.96 -3.03 -0.04 -27.17 16
7 N -0.71 -28.50 5.55 -466.78 -2.59 -31.09 16
8 C 0.27 14.28 5.43 85.63 0.46 14.74 16
9 C -0.56 -29.66 9.28 25.60 0.24 -29.43 16
10 H 0.08 4.00 7.60 -2.91 -0.02 3.98 16
11 C 0.00 0.17 5.46 84.65 0.46 0.63 16
12 N -0.93 -55.67 13.29 21.45 0.28 -55.38 16
13 Si 0.98 41.76 29.54 68.60 2.03 43.78 16
14 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16
15 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16
16 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16
17 C -0.04 -0.70 4.78 -19.87 -0.09 -0.79 16
18 C -0.12 -1.67 8.76 22.27 0.20 -1.47 16
19 C -0.07 -1.00 9.40 22.27 0.21 -0.79 16
20 C -0.20 -3.20 5.45 -19.87 -0.11 -3.31 16
21 C 0.51 8.47 3.36 71.24 0.24 8.71 16
22 F -0.18 -3.27 17.30 44.97 0.78 -2.49 16
23 F -0.18 -3.06 16.46 44.97 0.74 -2.32 16
24 F -0.18 -3.12 16.46 44.97 0.74 -2.38 16
25 C -0.07 -1.08 9.40 22.27 0.21 -0.87 16
26 C -0.12 -1.93 9.67 22.27 0.22 -1.71 16
27 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16
28 H 0.05 1.57 5.95 -2.39 -0.01 1.55 16
29 H 0.07 1.33 7.38 -2.39 -0.02 1.31 16
30 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16
31 H 0.12 2.05 7.58 -2.39 -0.02 2.03 16
32 H 0.41 13.32 8.32 -92.71 -0.77 12.55 16
33 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16
34 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16
35 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16
36 H 0.15 1.68 7.16 -2.91 -0.02 1.65 16
37 H 0.15 1.62 7.60 -2.91 -0.02 1.60 16
38 H 0.15 1.75 7.60 -2.91 -0.02 1.73 16
39 H 0.14 1.97 7.95 -2.91 -0.02 1.95 16
Total: -1.00 -69.54 344.01 5.70 -63.84
By element:
Atomic # 1 Polarization: 14.66 SS G_CDS: 0.32 Total: 14.99 kcal
Atomic # 6 Polarization: -5.22 SS G_CDS: 3.44 Total: -1.78 kcal
Atomic # 7 Polarization: -84.17 SS G_CDS: -2.30 Total: -86.47 kcal
Atomic # 8 Polarization: -27.13 SS G_CDS: -0.04 Total: -27.17 kcal
Atomic # 9 Polarization: -9.45 SS G_CDS: 2.26 Total: -7.19 kcal
Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal
Total: -69.54 5.70 -63.84 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000353098724.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -139.909 kcal
(2) G-P(sol) polarization free energy of solvation -69.544 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.453 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.702 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.842 kcal
(6) G-S(sol) free energy of system = (1) + (5) -203.751 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds