Wall clock time and date at job start Tue Mar 31 2020 11:25:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.38358 * 127.15136 * 2 1
4 4 C 1.39766 * 126.56287 * 0.06066 * 3 2 1
5 5 H 1.07997 * 120.00336 * 0.02562 * 4 3 2
6 6 C 1.40088 * 119.99674 * 180.02562 * 4 3 2
7 7 N 1.30808 * 120.00229 * 0.02562 * 6 4 3
8 8 Si 1.86801 * 119.99702 * 180.02562 * 6 4 3
9 9 H 1.48503 * 109.47243 * 359.97438 * 8 6 4
10 10 H 1.48494 * 109.47230 * 120.00351 * 8 6 4
11 11 H 1.48507 * 109.47058 * 239.99865 * 8 6 4
12 12 N 1.33096 * 106.86966 * 180.02562 * 3 2 1
13 13 N 1.28523 * 109.74579 * 359.75640 * 12 3 2
14 14 C 1.32390 * 110.20429 * 0.39667 * 13 12 3
15 15 S 1.76199 * 126.25724 * 179.87698 * 14 13 12
16 16 C 1.80994 * 100.00307 * 359.68540 * 15 14 13
17 17 C 1.52991 * 109.47471 * 180.02562 * 16 15 14
18 18 H 1.09002 * 110.34493 * 307.12902 * 17 16 15
19 19 C 1.54350 * 110.30495 * 185.00086 * 17 16 15
20 20 C 1.54341 * 102.39006 * 267.42090 * 19 17 16
21 21 C 1.51372 * 105.17310 * 333.65231 * 20 19 17
22 22 C 1.38498 * 130.39214 * 197.14871 * 21 20 19
23 23 C 1.38101 * 120.21560 * 180.32390 * 22 21 20
24 24 C 1.38262 * 119.93201 * 359.37529 * 23 22 21
25 25 C 1.38096 * 119.93357 * 0.65369 * 24 23 22
26 26 C 1.38216 * 109.75535 * 17.18889 * 21 20 19
27 27 H 1.08996 * 109.47423 * 269.98570 * 1 2 3
28 28 H 1.08998 * 109.47287 * 29.98833 * 1 2 3
29 29 H 1.08998 * 109.47015 * 149.98588 * 1 2 3
30 30 H 0.96994 * 120.00323 * 179.97438 * 7 6 4
31 31 H 1.09001 * 109.47177 * 59.99849 * 16 15 14
32 32 H 1.09003 * 109.47153 * 300.00232 * 16 15 14
33 33 H 1.09008 * 110.81832 * 149.19766 * 19 17 16
34 34 H 1.08993 * 110.99385 * 25.72653 * 19 17 16
35 35 H 1.09003 * 110.30098 * 214.73060 * 20 19 17
36 36 H 1.08996 * 110.38682 * 92.62204 * 20 19 17
37 37 H 1.08002 * 119.88925 * 0.03944 * 22 21 20
38 38 H 1.08000 * 120.03713 * 179.70517 * 23 22 21
39 39 H 1.07999 * 120.02960 * 180.29486 * 24 23 22
40 40 H 1.08004 * 119.89418 * 179.63461 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.3006 1.1028 0.0000
4 6 1.9086 2.4444 0.0012
5 1 0.8595 2.7005 0.0027
6 6 2.8768 3.4568 0.0005
7 7 4.1476 3.1467 -0.0018
8 14 2.3529 5.2499 0.0028
9 1 0.8702 5.3325 0.0046
10 1 2.8881 5.9204 1.2149
11 1 2.8842 5.9224 -1.2101
12 7 3.5490 0.6414 -0.0006
13 7 3.5370 -0.6438 0.0042
14 6 2.2904 -1.0894 -0.0004
15 16 1.7873 -2.7780 0.0003
16 6 3.4058 -3.5882 -0.0009
17 6 3.2163 -5.1063 -0.0011
18 1 2.5578 -5.4061 0.8141
19 6 4.5810 -5.8165 0.1240
20 6 4.9719 -6.0450 -1.3515
21 6 3.6600 -6.1043 -2.1043
22 6 3.3718 -6.5910 -3.3686
23 6 2.0817 -6.5337 -3.8580
24 6 1.0714 -6.0007 -3.0790
25 6 1.3568 -5.5143 -1.8185
26 6 2.6513 -5.5650 -1.3284
27 1 -0.3634 -0.0003 1.0276
28 1 -0.3634 0.8901 -0.5136
29 1 -0.3633 -0.8898 -0.5140
30 1 4.8179 3.8477 -0.0027
31 1 3.9615 -3.2912 0.8885
32 1 3.9600 -3.2915 -0.8915
33 1 4.4769 -6.7662 0.6488
34 1 5.3093 -5.1776 0.6233
35 1 5.5120 -6.9858 -1.4583
36 1 5.5799 -5.2170 -1.7159
37 1 4.1595 -7.0125 -3.9754
38 1 1.8612 -6.9097 -4.8461
39 1 0.0611 -5.9595 -3.4583
40 1 0.5682 -5.0927 -1.2128
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000357074509.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:25:47
Heat of formation + Delta-G solvation = 83.542907 kcal
Electronic energy + Delta-G solvation = -22879.970128 eV
Core-core repulsion = 19593.197107 eV
Total energy + Delta-G solvation = -3286.773022 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 315.110 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-40.47906 -40.21958 -36.12494 -33.68278 -33.30308 -31.92792 -29.74803 -29.23698
-28.69495 -26.50975 -25.66649 -24.78475 -22.65156 -20.96292 -20.83290 -20.61675
-19.88001 -17.34294 -16.41821 -16.35106 -15.57430 -15.34524 -15.12652 -14.76046
-14.70207 -14.40549 -13.87384 -13.63325 -13.32487 -13.09089 -12.69012 -12.61024
-12.36961 -12.24139 -12.15922 -11.67617 -11.45331 -11.32044 -11.20685 -10.98949
-10.91790 -10.84994 -10.66438 -10.33767 -10.09192 -9.69036 -9.61141 -8.78085
-8.66597 -8.50660 -8.38779 -8.35644 -6.78890 -6.63996 -4.55842 1.37992
1.43640 2.10288 2.88297 2.91363 3.06751 3.11356 3.38213 3.78578
3.87964 4.25446 4.35714 4.44203 4.49911 4.84504 5.00308 5.01651
5.10847 5.26114 5.33916 5.36100 5.49527 5.53143 5.56338 5.61912
5.76260 5.86449 5.89511 5.90460 6.02017 6.02940 6.04979 6.20642
6.26419 6.48109 6.54788 6.70489 6.79646 6.90637 7.03586 7.25554
7.50745 7.91466 8.19372 8.71475 8.87790 10.28728 10.66268
Molecular weight = 315.11amu
Principal moments of inertia in cm(-1)
A = 0.022773 B = 0.003135 C = 0.003009
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1229.217314 B = 8929.769308 C = 9302.773000
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.102 3.898
2 N -0.516 5.516
3 C 0.346 3.654
4 C -0.448 4.448
5 H 0.084 0.916
6 C 0.078 3.922
7 N -0.737 5.737
8 Si 0.920 3.080
9 H -0.262 1.262
10 H -0.272 1.272
11 H -0.272 1.272
12 N -0.334 5.334
13 N -0.287 5.287
14 C 0.049 3.951
15 S -0.058 6.058
16 C -0.076 4.076
17 C -0.036 4.036
18 H 0.087 0.913
19 C -0.110 4.110
20 C -0.083 4.083
21 C -0.093 4.093
22 C -0.114 4.114
23 C -0.121 4.121
24 C -0.124 4.124
25 C -0.089 4.089
26 C -0.089 4.089
27 H 0.055 0.945
28 H 0.077 0.923
29 H 0.066 0.934
30 H 0.278 0.722
31 H 0.094 0.906
32 H 0.090 0.910
33 H 0.076 0.924
34 H 0.083 0.917
35 H 0.073 0.927
36 H 0.083 0.917
37 H 0.116 0.884
38 H 0.120 0.880
39 H 0.121 0.879
40 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.249 -16.406 -2.800 17.178
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.043 4.043
2 N -0.218 5.218
3 C 0.101 3.899
4 C -0.488 4.488
5 H 0.102 0.898
6 C -0.147 4.147
7 N -0.361 5.361
8 Si 0.744 3.256
9 H -0.185 1.185
10 H -0.197 1.197
11 H -0.197 1.197
12 N -0.181 5.181
13 N -0.133 5.133
14 C -0.323 4.323
15 S 0.170 5.830
16 C -0.226 4.226
17 C -0.056 4.056
18 H 0.105 0.895
19 C -0.149 4.149
20 C -0.120 4.120
21 C -0.093 4.093
22 C -0.132 4.132
23 C -0.139 4.139
24 C -0.142 4.142
25 C -0.107 4.107
26 C -0.089 4.089
27 H 0.074 0.926
28 H 0.096 0.904
29 H 0.084 0.916
30 H 0.089 0.911
31 H 0.113 0.887
32 H 0.108 0.892
33 H 0.094 0.906
34 H 0.102 0.898
35 H 0.092 0.908
36 H 0.101 0.899
37 H 0.134 0.866
38 H 0.138 0.862
39 H 0.139 0.861
40 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -3.570 -16.831 -2.791 17.430
hybrid contribution -0.584 1.659 -0.131 1.764
sum -4.153 -15.172 -2.922 15.999
Atomic orbital electron populations
1.21479 0.78604 1.02645 1.01566 1.46045 1.06053 1.05375 1.64317
1.21626 0.84790 0.88426 0.95062 1.18136 0.94697 0.86469 1.49520
0.89788 1.25796 0.94336 1.01276 0.93300 1.70017 1.00710 1.34853
1.30536 0.86075 0.79828 0.81054 0.78627 1.18545 1.19735 1.19745
1.75454 1.15295 0.97888 1.29488 1.74530 1.15231 1.07566 1.15981
1.25377 0.91487 0.92691 1.22775 1.84263 1.11430 0.91739 1.95593
1.23310 0.97634 0.94725 1.06894 1.20485 0.97176 0.92825 0.95139
0.89452 1.22340 0.95751 1.00565 0.96271 1.21077 0.94461 1.02363
0.94143 1.20596 0.95909 0.98367 0.94425 1.20563 0.96697 1.01061
0.94855 1.20999 0.92941 1.00368 0.99557 1.21011 0.99243 0.99572
0.94371 1.20672 0.95698 0.98428 0.95925 1.20472 0.93573 0.98486
0.96345 0.92594 0.90419 0.91575 0.91062 0.88740 0.89158 0.90556
0.89806 0.90795 0.89905 0.86555 0.86208 0.86053 0.86011
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.91 10.87 59.85 0.65 2.56 16
2 N -0.52 -12.72 3.26 -123.18 -0.40 -13.12 16
3 C 0.35 9.83 7.53 -154.81 -1.17 8.66 16
4 C -0.45 -12.04 9.04 -38.32 -0.35 -12.38 16
5 H 0.08 2.05 7.30 -52.49 -0.38 1.67 16
6 C 0.08 2.02 5.50 -17.29 -0.10 1.93 16
7 N -0.74 -20.48 11.94 55.56 0.66 -19.82 16
8 Si 0.92 18.69 29.56 -169.99 -5.03 13.66 16
9 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16
10 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16
11 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16
12 N -0.33 -10.21 10.48 31.26 0.33 -9.88 16
13 N -0.29 -8.03 11.62 30.89 0.36 -7.67 16
14 C 0.05 1.19 8.09 -87.27 -0.71 0.48 16
15 S -0.06 -1.06 20.44 -107.50 -2.20 -3.26 16
16 C -0.08 -1.24 4.59 37.15 0.17 -1.07 16
17 C -0.04 -0.46 2.88 -90.74 -0.26 -0.72 16
18 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16
19 C -0.11 -1.13 6.59 -25.32 -0.17 -1.30 16
20 C -0.08 -0.88 6.76 -26.85 -0.18 -1.06 16
21 C -0.09 -1.15 6.14 -104.20 -0.64 -1.79 16
22 C -0.11 -1.30 10.04 -39.54 -0.40 -1.69 16
23 C -0.12 -1.32 10.05 -39.62 -0.40 -1.72 16
24 C -0.12 -1.43 10.05 -39.62 -0.40 -1.83 16
25 C -0.09 -1.15 9.37 -39.54 -0.37 -1.52 16
26 C -0.09 -1.17 5.19 -104.20 -0.54 -1.71 16
27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
28 H 0.08 1.36 7.53 -51.93 -0.39 0.97 16
29 H 0.07 1.09 7.85 -51.93 -0.41 0.68 16
30 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16
31 H 0.09 1.58 8.09 -51.92 -0.42 1.16 16
32 H 0.09 1.63 8.13 -51.91 -0.42 1.21 16
33 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16
34 H 0.08 0.83 7.87 -51.93 -0.41 0.42 16
35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16
37 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16
38 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16
39 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16
40 H 0.12 1.51 7.67 -52.48 -0.40 1.11 16
LS Contribution 348.92 15.07 5.26 5.26
Total: -1.00 -33.67 348.92 -11.21 -44.89
By element:
Atomic # 1 Polarization: 8.43 SS G_CDS: -5.35 Total: 3.08 kcal
Atomic # 6 Polarization: -8.30 SS G_CDS: -4.85 Total: -13.15 kcal
Atomic # 7 Polarization: -51.44 SS G_CDS: 0.95 Total: -50.49 kcal
Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal
Atomic # 16 Polarization: -1.06 SS G_CDS: -2.20 Total: -3.26 kcal
Total LS contribution 5.26 Total: 5.26 kcal
Total: -33.67 -11.21 -44.89 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000357074509.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 128.431 kcal
(2) G-P(sol) polarization free energy of solvation -33.675 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.757 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.214 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.888 kcal
(6) G-S(sol) free energy of system = (1) + (5) 83.543 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds