Wall clock time and date at job start Tue Mar 31 2020 11:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38358 * 127.15136 * 2 1 4 4 C 1.39766 * 126.56287 * 0.06066 * 3 2 1 5 5 H 1.07997 * 120.00336 * 0.02562 * 4 3 2 6 6 C 1.40088 * 119.99674 * 180.02562 * 4 3 2 7 7 N 1.30808 * 120.00229 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99702 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47243 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47230 * 120.00351 * 8 6 4 11 11 H 1.48507 * 109.47058 * 239.99865 * 8 6 4 12 12 N 1.33096 * 106.86966 * 180.02562 * 3 2 1 13 13 N 1.28523 * 109.74579 * 359.75640 * 12 3 2 14 14 C 1.32390 * 110.20429 * 0.39667 * 13 12 3 15 15 S 1.76199 * 126.25724 * 179.87698 * 14 13 12 16 16 C 1.80994 * 100.00307 * 359.68540 * 15 14 13 17 17 C 1.52991 * 109.47471 * 180.02562 * 16 15 14 18 18 H 1.09002 * 110.34493 * 307.12902 * 17 16 15 19 19 C 1.54350 * 110.30495 * 185.00086 * 17 16 15 20 20 C 1.54341 * 102.39006 * 267.42090 * 19 17 16 21 21 C 1.51372 * 105.17310 * 333.65231 * 20 19 17 22 22 C 1.38498 * 130.39214 * 197.14871 * 21 20 19 23 23 C 1.38101 * 120.21560 * 180.32390 * 22 21 20 24 24 C 1.38262 * 119.93201 * 359.37529 * 23 22 21 25 25 C 1.38096 * 119.93357 * 0.65369 * 24 23 22 26 26 C 1.38216 * 109.75535 * 17.18889 * 21 20 19 27 27 H 1.08996 * 109.47423 * 269.98570 * 1 2 3 28 28 H 1.08998 * 109.47287 * 29.98833 * 1 2 3 29 29 H 1.08998 * 109.47015 * 149.98588 * 1 2 3 30 30 H 0.96994 * 120.00323 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47177 * 59.99849 * 16 15 14 32 32 H 1.09003 * 109.47153 * 300.00232 * 16 15 14 33 33 H 1.09008 * 110.81832 * 149.19766 * 19 17 16 34 34 H 1.08993 * 110.99385 * 25.72653 * 19 17 16 35 35 H 1.09003 * 110.30098 * 214.73060 * 20 19 17 36 36 H 1.08996 * 110.38682 * 92.62204 * 20 19 17 37 37 H 1.08002 * 119.88925 * 0.03944 * 22 21 20 38 38 H 1.08000 * 120.03713 * 179.70517 * 23 22 21 39 39 H 1.07999 * 120.02960 * 180.29486 * 24 23 22 40 40 H 1.08004 * 119.89418 * 179.63461 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1028 0.0000 4 6 1.9086 2.4444 0.0012 5 1 0.8595 2.7005 0.0027 6 6 2.8768 3.4568 0.0005 7 7 4.1476 3.1467 -0.0018 8 14 2.3529 5.2499 0.0028 9 1 0.8702 5.3325 0.0046 10 1 2.8881 5.9204 1.2149 11 1 2.8842 5.9224 -1.2101 12 7 3.5490 0.6414 -0.0006 13 7 3.5370 -0.6438 0.0042 14 6 2.2904 -1.0894 -0.0004 15 16 1.7873 -2.7780 0.0003 16 6 3.4058 -3.5882 -0.0009 17 6 3.2163 -5.1063 -0.0011 18 1 2.5578 -5.4061 0.8141 19 6 4.5810 -5.8165 0.1240 20 6 4.9719 -6.0450 -1.3515 21 6 3.6600 -6.1043 -2.1043 22 6 3.3718 -6.5910 -3.3686 23 6 2.0817 -6.5337 -3.8580 24 6 1.0714 -6.0007 -3.0790 25 6 1.3568 -5.5143 -1.8185 26 6 2.6513 -5.5650 -1.3284 27 1 -0.3634 -0.0003 1.0276 28 1 -0.3634 0.8901 -0.5136 29 1 -0.3633 -0.8898 -0.5140 30 1 4.8179 3.8477 -0.0027 31 1 3.9615 -3.2912 0.8885 32 1 3.9600 -3.2915 -0.8915 33 1 4.4769 -6.7662 0.6488 34 1 5.3093 -5.1776 0.6233 35 1 5.5120 -6.9858 -1.4583 36 1 5.5799 -5.2170 -1.7159 37 1 4.1595 -7.0125 -3.9754 38 1 1.8612 -6.9097 -4.8461 39 1 0.0611 -5.9595 -3.4583 40 1 0.5682 -5.0927 -1.2128 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357074509.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:47 Heat of formation + Delta-G solvation = 83.542907 kcal Electronic energy + Delta-G solvation = -22879.970128 eV Core-core repulsion = 19593.197107 eV Total energy + Delta-G solvation = -3286.773022 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.47906 -40.21958 -36.12494 -33.68278 -33.30308 -31.92792 -29.74803 -29.23698 -28.69495 -26.50975 -25.66649 -24.78475 -22.65156 -20.96292 -20.83290 -20.61675 -19.88001 -17.34294 -16.41821 -16.35106 -15.57430 -15.34524 -15.12652 -14.76046 -14.70207 -14.40549 -13.87384 -13.63325 -13.32487 -13.09089 -12.69012 -12.61024 -12.36961 -12.24139 -12.15922 -11.67617 -11.45331 -11.32044 -11.20685 -10.98949 -10.91790 -10.84994 -10.66438 -10.33767 -10.09192 -9.69036 -9.61141 -8.78085 -8.66597 -8.50660 -8.38779 -8.35644 -6.78890 -6.63996 -4.55842 1.37992 1.43640 2.10288 2.88297 2.91363 3.06751 3.11356 3.38213 3.78578 3.87964 4.25446 4.35714 4.44203 4.49911 4.84504 5.00308 5.01651 5.10847 5.26114 5.33916 5.36100 5.49527 5.53143 5.56338 5.61912 5.76260 5.86449 5.89511 5.90460 6.02017 6.02940 6.04979 6.20642 6.26419 6.48109 6.54788 6.70489 6.79646 6.90637 7.03586 7.25554 7.50745 7.91466 8.19372 8.71475 8.87790 10.28728 10.66268 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.022773 B = 0.003135 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.217314 B = 8929.769308 C = 9302.773000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.516 5.516 3 C 0.346 3.654 4 C -0.448 4.448 5 H 0.084 0.916 6 C 0.078 3.922 7 N -0.737 5.737 8 Si 0.920 3.080 9 H -0.262 1.262 10 H -0.272 1.272 11 H -0.272 1.272 12 N -0.334 5.334 13 N -0.287 5.287 14 C 0.049 3.951 15 S -0.058 6.058 16 C -0.076 4.076 17 C -0.036 4.036 18 H 0.087 0.913 19 C -0.110 4.110 20 C -0.083 4.083 21 C -0.093 4.093 22 C -0.114 4.114 23 C -0.121 4.121 24 C -0.124 4.124 25 C -0.089 4.089 26 C -0.089 4.089 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.278 0.722 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.249 -16.406 -2.800 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.218 5.218 3 C 0.101 3.899 4 C -0.488 4.488 5 H 0.102 0.898 6 C -0.147 4.147 7 N -0.361 5.361 8 Si 0.744 3.256 9 H -0.185 1.185 10 H -0.197 1.197 11 H -0.197 1.197 12 N -0.181 5.181 13 N -0.133 5.133 14 C -0.323 4.323 15 S 0.170 5.830 16 C -0.226 4.226 17 C -0.056 4.056 18 H 0.105 0.895 19 C -0.149 4.149 20 C -0.120 4.120 21 C -0.093 4.093 22 C -0.132 4.132 23 C -0.139 4.139 24 C -0.142 4.142 25 C -0.107 4.107 26 C -0.089 4.089 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.570 -16.831 -2.791 17.430 hybrid contribution -0.584 1.659 -0.131 1.764 sum -4.153 -15.172 -2.922 15.999 Atomic orbital electron populations 1.21479 0.78604 1.02645 1.01566 1.46045 1.06053 1.05375 1.64317 1.21626 0.84790 0.88426 0.95062 1.18136 0.94697 0.86469 1.49520 0.89788 1.25796 0.94336 1.01276 0.93300 1.70017 1.00710 1.34853 1.30536 0.86075 0.79828 0.81054 0.78627 1.18545 1.19735 1.19745 1.75454 1.15295 0.97888 1.29488 1.74530 1.15231 1.07566 1.15981 1.25377 0.91487 0.92691 1.22775 1.84263 1.11430 0.91739 1.95593 1.23310 0.97634 0.94725 1.06894 1.20485 0.97176 0.92825 0.95139 0.89452 1.22340 0.95751 1.00565 0.96271 1.21077 0.94461 1.02363 0.94143 1.20596 0.95909 0.98367 0.94425 1.20563 0.96697 1.01061 0.94855 1.20999 0.92941 1.00368 0.99557 1.21011 0.99243 0.99572 0.94371 1.20672 0.95698 0.98428 0.95925 1.20472 0.93573 0.98486 0.96345 0.92594 0.90419 0.91575 0.91062 0.88740 0.89158 0.90556 0.89806 0.90795 0.89905 0.86555 0.86208 0.86053 0.86011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.91 10.87 59.85 0.65 2.56 16 2 N -0.52 -12.72 3.26 -123.18 -0.40 -13.12 16 3 C 0.35 9.83 7.53 -154.81 -1.17 8.66 16 4 C -0.45 -12.04 9.04 -38.32 -0.35 -12.38 16 5 H 0.08 2.05 7.30 -52.49 -0.38 1.67 16 6 C 0.08 2.02 5.50 -17.29 -0.10 1.93 16 7 N -0.74 -20.48 11.94 55.56 0.66 -19.82 16 8 Si 0.92 18.69 29.56 -169.99 -5.03 13.66 16 9 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 10 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 11 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 12 N -0.33 -10.21 10.48 31.26 0.33 -9.88 16 13 N -0.29 -8.03 11.62 30.89 0.36 -7.67 16 14 C 0.05 1.19 8.09 -87.27 -0.71 0.48 16 15 S -0.06 -1.06 20.44 -107.50 -2.20 -3.26 16 16 C -0.08 -1.24 4.59 37.15 0.17 -1.07 16 17 C -0.04 -0.46 2.88 -90.74 -0.26 -0.72 16 18 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 19 C -0.11 -1.13 6.59 -25.32 -0.17 -1.30 16 20 C -0.08 -0.88 6.76 -26.85 -0.18 -1.06 16 21 C -0.09 -1.15 6.14 -104.20 -0.64 -1.79 16 22 C -0.11 -1.30 10.04 -39.54 -0.40 -1.69 16 23 C -0.12 -1.32 10.05 -39.62 -0.40 -1.72 16 24 C -0.12 -1.43 10.05 -39.62 -0.40 -1.83 16 25 C -0.09 -1.15 9.37 -39.54 -0.37 -1.52 16 26 C -0.09 -1.17 5.19 -104.20 -0.54 -1.71 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.36 7.53 -51.93 -0.39 0.97 16 29 H 0.07 1.09 7.85 -51.93 -0.41 0.68 16 30 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 31 H 0.09 1.58 8.09 -51.92 -0.42 1.16 16 32 H 0.09 1.63 8.13 -51.91 -0.42 1.21 16 33 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.08 0.83 7.87 -51.93 -0.41 0.42 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.12 1.51 7.67 -52.48 -0.40 1.11 16 LS Contribution 348.92 15.07 5.26 5.26 Total: -1.00 -33.67 348.92 -11.21 -44.89 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -5.35 Total: 3.08 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -4.85 Total: -13.15 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.95 Total: -50.49 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Atomic # 16 Polarization: -1.06 SS G_CDS: -2.20 Total: -3.26 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.67 -11.21 -44.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357074509.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.431 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds