Wall clock time and date at job start Tue Mar 31 2020 11:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38358 * 127.15136 * 2 1 4 4 C 1.39766 * 126.56287 * 0.06066 * 3 2 1 5 5 H 1.07997 * 120.00336 * 0.02562 * 4 3 2 6 6 C 1.40088 * 119.99674 * 180.02562 * 4 3 2 7 7 N 1.30808 * 120.00229 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99702 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47243 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47230 * 120.00351 * 8 6 4 11 11 H 1.48507 * 109.47058 * 239.99865 * 8 6 4 12 12 N 1.33096 * 106.86966 * 180.02562 * 3 2 1 13 13 N 1.28523 * 109.74579 * 359.75640 * 12 3 2 14 14 C 1.32390 * 110.20429 * 0.39667 * 13 12 3 15 15 S 1.76199 * 126.25724 * 179.87698 * 14 13 12 16 16 C 1.80994 * 100.00307 * 359.68540 * 15 14 13 17 17 C 1.52991 * 109.47471 * 180.02562 * 16 15 14 18 18 H 1.09002 * 110.34493 * 307.12902 * 17 16 15 19 19 C 1.54350 * 110.30495 * 185.00086 * 17 16 15 20 20 C 1.54341 * 102.39006 * 267.42090 * 19 17 16 21 21 C 1.51372 * 105.17310 * 333.65231 * 20 19 17 22 22 C 1.38498 * 130.39214 * 197.14871 * 21 20 19 23 23 C 1.38101 * 120.21560 * 180.32390 * 22 21 20 24 24 C 1.38262 * 119.93201 * 359.37529 * 23 22 21 25 25 C 1.38096 * 119.93357 * 0.65369 * 24 23 22 26 26 C 1.38216 * 109.75535 * 17.18889 * 21 20 19 27 27 H 1.08996 * 109.47423 * 269.98570 * 1 2 3 28 28 H 1.08998 * 109.47287 * 29.98833 * 1 2 3 29 29 H 1.08998 * 109.47015 * 149.98588 * 1 2 3 30 30 H 0.96994 * 120.00323 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47177 * 59.99849 * 16 15 14 32 32 H 1.09003 * 109.47153 * 300.00232 * 16 15 14 33 33 H 1.09008 * 110.81832 * 149.19766 * 19 17 16 34 34 H 1.08993 * 110.99385 * 25.72653 * 19 17 16 35 35 H 1.09003 * 110.30098 * 214.73060 * 20 19 17 36 36 H 1.08996 * 110.38682 * 92.62204 * 20 19 17 37 37 H 1.08002 * 119.88925 * 0.03944 * 22 21 20 38 38 H 1.08000 * 120.03713 * 179.70517 * 23 22 21 39 39 H 1.07999 * 120.02960 * 180.29486 * 24 23 22 40 40 H 1.08004 * 119.89418 * 179.63461 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1028 0.0000 4 6 1.9086 2.4444 0.0012 5 1 0.8595 2.7005 0.0027 6 6 2.8768 3.4568 0.0005 7 7 4.1476 3.1467 -0.0018 8 14 2.3529 5.2499 0.0028 9 1 0.8702 5.3325 0.0046 10 1 2.8881 5.9204 1.2149 11 1 2.8842 5.9224 -1.2101 12 7 3.5490 0.6414 -0.0006 13 7 3.5370 -0.6438 0.0042 14 6 2.2904 -1.0894 -0.0004 15 16 1.7873 -2.7780 0.0003 16 6 3.4058 -3.5882 -0.0009 17 6 3.2163 -5.1063 -0.0011 18 1 2.5578 -5.4061 0.8141 19 6 4.5810 -5.8165 0.1240 20 6 4.9719 -6.0450 -1.3515 21 6 3.6600 -6.1043 -2.1043 22 6 3.3718 -6.5910 -3.3686 23 6 2.0817 -6.5337 -3.8580 24 6 1.0714 -6.0007 -3.0790 25 6 1.3568 -5.5143 -1.8185 26 6 2.6513 -5.5650 -1.3284 27 1 -0.3634 -0.0003 1.0276 28 1 -0.3634 0.8901 -0.5136 29 1 -0.3633 -0.8898 -0.5140 30 1 4.8179 3.8477 -0.0027 31 1 3.9615 -3.2912 0.8885 32 1 3.9600 -3.2915 -0.8915 33 1 4.4769 -6.7662 0.6488 34 1 5.3093 -5.1776 0.6233 35 1 5.5120 -6.9858 -1.4583 36 1 5.5799 -5.2170 -1.7159 37 1 4.1595 -7.0125 -3.9754 38 1 1.8612 -6.9097 -4.8461 39 1 0.0611 -5.9595 -3.4583 40 1 0.5682 -5.0927 -1.2128 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357074509.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:46 Heat of formation + Delta-G solvation = 66.211010 kcal Electronic energy + Delta-G solvation = -22880.721696 eV Core-core repulsion = 19593.197107 eV Total energy + Delta-G solvation = -3287.524589 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.45449 -41.12754 -37.03711 -35.63309 -35.16183 -32.89056 -31.36967 -30.63837 -29.59485 -28.27445 -27.46583 -25.96523 -23.53142 -22.80411 -22.43826 -21.77970 -21.01348 -19.26453 -17.96485 -17.32089 -17.26078 -16.58772 -16.50606 -16.14611 -16.00803 -15.69144 -15.26443 -15.02112 -14.80878 -14.01565 -13.96919 -13.83413 -13.65947 -13.62065 -13.31299 -13.11624 -12.97215 -12.79242 -12.54568 -12.27778 -12.00837 -11.92596 -11.76404 -11.71740 -11.62002 -11.47627 -11.41467 -10.57987 -10.36518 -10.27780 -9.67865 -9.41396 -8.55313 -8.50404 -6.59325 0.42735 0.48215 0.57958 1.18593 1.30823 1.40953 1.59187 1.60498 2.17892 2.44169 2.50409 2.87278 3.33082 3.43476 3.57746 3.82979 4.06038 4.11715 4.19319 4.22905 4.24685 4.37077 4.43252 4.51246 4.59394 4.63274 4.72096 4.80486 4.88450 4.93999 4.94589 4.96345 5.07509 5.18903 5.25671 5.31334 5.33172 5.55829 5.60546 5.66028 5.78086 6.03067 6.16519 6.21220 6.74859 6.91750 8.40702 8.63887 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.022773 B = 0.003135 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.217314 B = 8929.769308 C = 9302.773000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.522 5.522 3 C 0.316 3.684 4 C -0.472 4.472 5 H 0.103 0.897 6 C 0.028 3.972 7 N -0.789 5.789 8 Si 1.008 2.992 9 H -0.245 1.245 10 H -0.267 1.267 11 H -0.267 1.267 12 N -0.390 5.390 13 N -0.333 5.333 14 C 0.055 3.945 15 S -0.007 6.007 16 C -0.072 4.072 17 C -0.030 4.030 18 H 0.098 0.902 19 C -0.105 4.105 20 C -0.083 4.083 21 C -0.106 4.106 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.132 4.132 25 C -0.107 4.107 26 C -0.112 4.112 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.284 0.716 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.136 0.864 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.027 -17.427 -3.244 18.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.224 5.224 3 C 0.069 3.931 4 C -0.513 4.513 5 H 0.121 0.879 6 C -0.192 4.192 7 N -0.414 5.414 8 Si 0.827 3.173 9 H -0.168 1.168 10 H -0.192 1.192 11 H -0.192 1.192 12 N -0.236 5.236 13 N -0.177 5.177 14 C -0.319 4.319 15 S 0.220 5.780 16 C -0.221 4.221 17 C -0.050 4.050 18 H 0.116 0.884 19 C -0.144 4.144 20 C -0.120 4.120 21 C -0.106 4.106 22 C -0.141 4.141 23 C -0.141 4.141 24 C -0.150 4.150 25 C -0.125 4.125 26 C -0.112 4.112 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.154 0.846 38 H 0.163 0.837 39 H 0.159 0.841 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.367 -17.871 -3.233 18.937 hybrid contribution -0.089 1.736 -0.041 1.739 sum -5.456 -16.135 -3.273 17.344 Atomic orbital electron populations 1.21841 0.75330 1.04392 1.03335 1.46393 1.08091 1.04467 1.63456 1.22062 0.85142 0.89953 0.95917 1.18660 0.95994 0.86471 1.50139 0.87899 1.27008 0.93890 1.06553 0.91794 1.70163 1.02434 1.36943 1.31869 0.84789 0.80136 0.73700 0.78711 1.16785 1.19156 1.19205 1.75305 1.17386 0.99195 1.31707 1.74402 1.17302 1.07082 1.18952 1.26547 0.91030 0.95754 1.18573 1.84073 1.12304 0.86817 1.94780 1.23407 0.96173 0.97256 1.05303 1.20499 0.98978 0.89893 0.95658 0.88420 1.22378 0.94163 1.01310 0.96554 1.21112 0.93876 1.03126 0.93898 1.20898 0.96382 0.98345 0.94950 1.20912 0.97630 1.00776 0.94785 1.21375 0.92622 0.99519 1.00543 1.21322 1.00546 0.99148 0.93968 1.20844 0.95690 0.99224 0.96766 1.20618 0.94155 0.99660 0.96751 0.90720 0.89351 0.89189 0.90551 0.89651 0.91416 0.88186 0.89736 0.88525 0.90925 0.84580 0.83672 0.84091 0.86087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.37 10.87 127.77 1.39 4.76 16 2 N -0.52 -25.98 3.26 -543.64 -1.77 -27.75 16 3 C 0.32 18.51 7.53 133.23 1.00 19.52 16 4 C -0.47 -25.77 9.04 23.09 0.21 -25.56 16 5 H 0.10 4.97 7.30 -2.91 -0.02 4.95 16 6 C 0.03 1.47 5.50 85.29 0.47 1.94 16 7 N -0.79 -45.50 11.94 21.86 0.26 -45.24 16 8 Si 1.01 38.25 29.56 68.60 2.03 40.28 16 9 H -0.25 -8.53 7.11 99.48 0.71 -7.82 16 10 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 11 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 12 N -0.39 -24.99 10.48 -55.02 -0.58 -25.56 16 13 N -0.33 -19.44 11.62 -56.17 -0.65 -20.09 16 14 C 0.05 2.72 8.09 179.18 1.45 4.17 16 15 S -0.01 -0.25 20.44 -56.49 -1.15 -1.41 16 16 C -0.07 -2.35 4.59 71.98 0.33 -2.02 16 17 C -0.03 -0.73 2.88 -10.87 -0.03 -0.76 16 18 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 19 C -0.10 -2.00 6.59 31.51 0.21 -1.79 16 20 C -0.08 -1.64 6.76 30.52 0.21 -1.43 16 21 C -0.11 -2.47 6.14 -19.59 -0.12 -2.59 16 22 C -0.12 -2.57 10.04 22.30 0.22 -2.35 16 23 C -0.12 -2.41 10.05 22.24 0.22 -2.19 16 24 C -0.13 -2.80 10.05 22.24 0.22 -2.58 16 25 C -0.11 -2.62 9.37 22.30 0.21 -2.41 16 26 C -0.11 -2.82 5.19 -19.59 -0.10 -2.92 16 27 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.09 2.97 7.53 -2.39 -0.02 2.95 16 29 H 0.09 2.77 7.85 -2.39 -0.02 2.75 16 30 H 0.28 14.73 8.30 -92.71 -0.77 13.96 16 31 H 0.08 2.94 8.09 -2.39 -0.02 2.92 16 32 H 0.07 2.53 8.13 -2.39 -0.02 2.51 16 33 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.08 1.60 7.87 -2.39 -0.02 1.58 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 38 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 40 H 0.12 2.85 7.67 -2.91 -0.02 2.83 16 Total: -1.00 -77.23 348.92 5.07 -72.15 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 1.05 Total: 23.84 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 5.89 Total: -16.22 kcal Atomic # 7 Polarization: -115.90 SS G_CDS: -2.74 Total: -118.64 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Atomic # 16 Polarization: -0.25 SS G_CDS: -1.15 Total: -1.41 kcal Total: -77.23 5.07 -72.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357074509.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.366 kcal (2) G-P(sol) polarization free energy of solvation -77.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds