Wall clock time and date at job start Tue Mar 31 2020 11:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46506 * 109.46918 * 2 1 4 4 C 1.34776 * 120.00118 * 37.58574 * 3 2 1 5 5 O 1.21538 * 120.00236 * 191.37163 * 4 3 2 6 6 C 1.47896 * 119.99853 * 11.37119 * 4 3 2 7 7 C 1.39915 * 120.02290 * 16.44491 * 6 4 3 8 8 C 1.38334 * 120.35695 * 180.25872 * 7 6 4 9 9 C 1.37754 * 120.40833 * 359.44841 * 8 7 6 10 10 C 1.40749 * 120.04236 * 0.27670 * 9 8 7 11 11 C 1.41436 * 120.17877 * 179.97438 * 10 9 8 12 12 H 1.07996 * 119.99932 * 327.42179 * 11 10 9 13 13 C 1.39944 * 119.99600 * 147.41589 * 11 10 9 14 14 N 1.30829 * 120.00231 * 358.98556 * 13 11 10 15 15 Si 1.86799 * 119.99637 * 178.98231 * 13 11 10 16 16 H 1.48500 * 109.47123 * 90.00114 * 15 13 11 17 17 H 1.48501 * 109.46880 * 210.00048 * 15 13 11 18 18 H 1.48505 * 109.47309 * 330.00163 * 15 13 11 19 19 C 1.38993 * 120.02166 * 196.15631 * 6 4 3 20 20 C 1.46501 * 120.00209 * 217.58471 * 3 2 1 21 21 H 1.08996 * 109.47106 * 173.63361 * 20 3 2 22 22 C 1.53003 * 109.46829 * 53.63201 * 20 3 2 23 23 C 1.53000 * 109.47068 * 293.63701 * 20 3 2 24 24 F 1.39898 * 109.47236 * 66.50400 * 23 20 3 25 25 F 1.39900 * 109.47255 * 186.50191 * 23 20 3 26 26 F 1.39901 * 109.47064 * 306.50493 * 23 20 3 27 27 H 1.09007 * 109.47204 * 215.50448 * 1 2 3 28 28 H 1.08997 * 109.47743 * 335.50518 * 1 2 3 29 29 H 1.09000 * 109.47506 * 95.50411 * 1 2 3 30 30 H 1.08994 * 109.47384 * 240.00545 * 2 1 3 31 31 H 1.08998 * 109.47512 * 119.99841 * 2 1 3 32 32 H 1.08005 * 119.82186 * 359.97438 * 7 6 4 33 33 H 1.07996 * 119.79370 * 179.72622 * 8 7 6 34 34 H 1.07994 * 119.97819 * 180.29593 * 9 8 7 35 35 H 0.96992 * 119.99816 * 179.97438 * 14 13 11 36 36 H 1.07998 * 120.20629 * 359.97438 * 19 6 4 37 37 H 1.09000 * 109.47721 * 300.00350 * 22 20 3 38 38 H 1.09003 * 109.46939 * 60.00726 * 22 20 3 39 39 H 1.09001 * 109.47005 * 179.97438 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 1.3708 2.3249 0.7119 5 8 1.6428 3.4989 0.5538 6 6 0.3293 1.9319 1.6856 7 6 0.2465 0.6062 2.1252 8 6 -0.7283 0.2298 3.0317 9 6 -1.6214 1.1577 3.5207 10 6 -1.5500 2.4972 3.0943 11 6 -2.4658 3.4522 3.5940 12 1 -3.4735 3.1548 3.8439 13 6 -2.0660 4.7824 3.7647 14 7 -0.8396 5.1385 3.4808 15 14 -3.2838 6.0496 4.3977 16 1 -3.2194 6.1004 5.8805 17 1 -2.9437 7.3839 3.8415 18 1 -4.6562 5.6720 3.9745 19 6 -0.5642 2.8805 2.1691 20 6 3.2103 1.7369 -0.7738 21 1 3.3536 2.8170 -0.7446 22 6 3.0299 1.2854 -2.2246 23 6 4.4343 1.0434 -0.1724 24 9 4.3176 -0.3402 -0.3437 25 9 5.5906 1.4970 -0.8162 26 9 4.5141 1.3392 1.1927 27 1 -0.3634 -0.8366 0.5969 28 1 -0.3634 0.9351 0.4261 29 1 -0.3634 -0.0986 -1.0229 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.9445 -0.1283 1.7513 33 1 -0.7867 -0.7969 3.3616 34 1 -2.3766 0.8573 4.2317 35 1 -0.5627 6.0605 3.5988 36 1 -0.5008 3.9060 1.8364 37 1 2.8865 0.2052 -2.2539 38 1 2.1579 1.7795 -2.6531 39 1 3.9166 1.5503 -2.8004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357914686.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:37 Heat of formation + Delta-G solvation = -111.424662 kcal Electronic energy + Delta-G solvation = -27637.511824 eV Core-core repulsion = 23325.382012 eV Total energy + Delta-G solvation = -4312.129812 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.08904 -47.62506 -47.51671 -40.48779 -37.43362 -36.28126 -34.30436 -32.82491 -29.98965 -29.67871 -29.03032 -26.39272 -25.35133 -23.71760 -23.01600 -21.10935 -20.97320 -19.28826 -18.48900 -18.38659 -17.51818 -17.37971 -16.31267 -15.82358 -15.67641 -15.03395 -14.58617 -14.42152 -14.34322 -14.00473 -13.85790 -13.73133 -13.70330 -13.43643 -13.28852 -13.18438 -12.92603 -12.57253 -12.37223 -12.30904 -11.98651 -11.82957 -11.52695 -11.31269 -11.23233 -11.08585 -10.84264 -10.37090 -10.21647 -9.90327 -9.66678 -9.22761 -9.15485 -8.59758 -7.59256 -7.23828 -6.67131 -4.43590 2.02645 2.66033 2.79630 2.94975 3.08298 3.11845 3.12493 3.57752 3.79611 3.94475 4.02424 4.29024 4.61179 4.75814 4.87200 5.05838 5.25917 5.31258 5.37654 5.51111 5.57022 5.62142 5.86932 6.03223 6.11756 6.20329 6.30215 6.48016 6.61786 6.85007 6.91377 6.97671 7.22409 7.33078 7.47564 7.66349 7.77121 7.95243 8.14970 8.48148 8.63190 8.80764 8.84293 10.24364 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.021114 B = 0.004116 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.821360 B = 6800.635130 C = 7422.151248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.108 3.892 3 N -0.616 5.616 4 C 0.573 3.427 5 O -0.530 6.530 6 C -0.145 4.145 7 C -0.205 4.205 8 C -0.119 4.119 9 C -0.196 4.196 10 C 0.090 3.910 11 C -0.464 4.464 12 H 0.078 0.922 13 C 0.069 3.931 14 N -0.801 5.801 15 Si 0.915 3.085 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.262 1.262 19 C -0.074 4.074 20 C 0.100 3.900 21 H 0.140 0.860 22 C -0.164 4.164 23 C 0.437 3.563 24 F -0.184 7.184 25 F -0.183 7.183 26 F -0.175 7.175 27 H 0.074 0.926 28 H 0.118 0.882 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.282 0.718 36 H 0.141 0.859 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.509 -8.390 -8.940 13.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.014 4.014 3 N -0.351 5.351 4 C 0.367 3.633 5 O -0.406 6.406 6 C -0.148 4.148 7 C -0.224 4.224 8 C -0.137 4.137 9 C -0.216 4.216 10 C 0.088 3.912 11 C -0.494 4.494 12 H 0.097 0.903 13 C -0.148 4.148 14 N -0.428 5.428 15 Si 0.740 3.260 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.186 1.186 19 C -0.094 4.094 20 C -0.007 4.007 21 H 0.157 0.843 22 C -0.222 4.222 23 C 0.381 3.619 24 F -0.165 7.165 25 F -0.165 7.165 26 F -0.157 7.157 27 H 0.093 0.907 28 H 0.136 0.864 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.141 0.859 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.159 0.841 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.806 -7.541 -8.995 13.568 hybrid contribution -0.064 0.308 0.553 0.636 sum 6.742 -7.233 -8.442 13.001 Atomic orbital electron populations 1.23405 0.93601 1.07341 1.00984 1.21957 0.96317 0.81567 1.01530 1.47899 1.27072 1.10738 1.49429 1.18964 0.81086 0.84258 0.79009 1.90712 1.65668 1.17785 1.66408 1.19270 0.98992 0.95296 1.01281 1.21523 1.02565 0.95104 1.03224 1.20443 0.96960 0.97691 0.98652 1.21230 1.02113 0.94707 1.03564 1.17599 0.92351 0.91636 0.89649 1.19527 0.98845 0.92504 1.38520 0.90347 1.25921 0.95624 0.99397 0.93841 1.69714 1.16717 1.19643 1.36680 0.86198 0.80984 0.79343 0.79490 1.19523 1.20181 1.18644 1.21886 0.94355 0.98775 0.94414 1.22047 0.82781 1.03114 0.92730 0.84281 1.22167 1.04329 1.03120 0.92564 1.21300 0.85938 0.77537 0.77110 1.93143 1.96066 1.32134 1.95190 1.93164 1.52820 1.88902 1.81595 1.93228 1.96605 1.92947 1.32886 0.90695 0.86434 0.94182 0.90635 0.90834 0.85898 0.88778 0.88599 0.90657 0.84129 0.90797 0.89678 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.86 7.92 37.15 0.29 -2.56 16 2 C 0.11 1.46 4.50 -4.04 -0.02 1.44 16 3 N -0.62 -9.93 2.50 -167.20 -0.42 -10.35 16 4 C 0.57 12.00 7.05 -12.31 -0.09 11.91 16 5 O -0.53 -12.66 15.83 5.33 0.08 -12.58 16 6 C -0.15 -3.24 3.86 -105.04 -0.41 -3.64 16 7 C -0.21 -4.02 5.61 -38.92 -0.22 -4.23 16 8 C -0.12 -2.38 9.88 -39.72 -0.39 -2.78 16 9 C -0.20 -4.46 9.78 -38.81 -0.38 -4.84 16 10 C 0.09 2.30 5.55 -106.87 -0.59 1.70 16 11 C -0.46 -11.96 9.06 -37.73 -0.34 -12.30 16 12 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 13 C 0.07 1.72 5.38 -17.34 -0.09 1.63 16 14 N -0.80 -21.21 10.65 55.55 0.59 -20.62 16 15 Si 0.92 18.80 29.56 -169.99 -5.02 13.78 16 16 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 17 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 18 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 19 C -0.07 -1.90 8.19 -38.44 -0.31 -2.21 16 20 C 0.10 1.37 2.72 -67.93 -0.18 1.19 16 21 H 0.14 2.06 6.94 -51.93 -0.36 1.70 16 22 C -0.16 -1.64 8.81 37.16 0.33 -1.31 16 23 C 0.44 5.96 2.78 37.16 0.10 6.06 16 24 F -0.18 -2.32 15.01 2.25 0.03 -2.29 16 25 F -0.18 -2.34 17.06 2.25 0.04 -2.30 16 26 F -0.18 -2.88 17.12 2.25 0.04 -2.85 16 27 H 0.07 1.02 6.99 -51.93 -0.36 0.66 16 28 H 0.12 2.16 3.40 -60.12 -0.20 1.95 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.82 5.73 -51.93 -0.30 0.53 16 31 H 0.07 1.00 6.06 -51.93 -0.31 0.69 16 32 H 0.12 2.06 3.17 -52.48 -0.17 1.89 16 33 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 35 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 36 H 0.14 3.94 5.83 -52.49 -0.31 3.63 16 37 H 0.07 0.67 5.96 -51.93 -0.31 0.36 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 0.65 7.98 -51.93 -0.41 0.24 16 LS Contribution 320.70 15.07 4.83 4.83 Total: -1.00 -28.34 320.70 -6.10 -34.44 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -3.97 Total: 7.90 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -2.30 Total: -9.96 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.17 Total: -30.96 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.08 Total: -12.58 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 0.11 Total: -7.44 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.34 -6.10 -34.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357914686.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.989 kcal (2) G-P(sol) polarization free energy of solvation -28.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds