Wall clock time and date at job start Tue Mar 31 2020 11:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46506 * 109.46918 * 2 1 4 4 C 1.34776 * 120.00118 * 37.58574 * 3 2 1 5 5 O 1.21538 * 120.00236 * 191.37163 * 4 3 2 6 6 C 1.47896 * 119.99853 * 11.37119 * 4 3 2 7 7 C 1.39915 * 120.02290 * 16.44491 * 6 4 3 8 8 C 1.38334 * 120.35695 * 180.25872 * 7 6 4 9 9 C 1.37754 * 120.40833 * 359.44841 * 8 7 6 10 10 C 1.40749 * 120.04236 * 0.27670 * 9 8 7 11 11 C 1.41436 * 120.17877 * 179.97438 * 10 9 8 12 12 H 1.07996 * 119.99932 * 327.42179 * 11 10 9 13 13 C 1.39944 * 119.99600 * 147.41589 * 11 10 9 14 14 N 1.30829 * 120.00231 * 358.98556 * 13 11 10 15 15 Si 1.86799 * 119.99637 * 178.98231 * 13 11 10 16 16 H 1.48500 * 109.47123 * 90.00114 * 15 13 11 17 17 H 1.48501 * 109.46880 * 210.00048 * 15 13 11 18 18 H 1.48505 * 109.47309 * 330.00163 * 15 13 11 19 19 C 1.38993 * 120.02166 * 196.15631 * 6 4 3 20 20 C 1.46501 * 120.00209 * 217.58471 * 3 2 1 21 21 H 1.08996 * 109.47106 * 173.63361 * 20 3 2 22 22 C 1.53003 * 109.46829 * 53.63201 * 20 3 2 23 23 C 1.53000 * 109.47068 * 293.63701 * 20 3 2 24 24 F 1.39898 * 109.47236 * 66.50400 * 23 20 3 25 25 F 1.39900 * 109.47255 * 186.50191 * 23 20 3 26 26 F 1.39901 * 109.47064 * 306.50493 * 23 20 3 27 27 H 1.09007 * 109.47204 * 215.50448 * 1 2 3 28 28 H 1.08997 * 109.47743 * 335.50518 * 1 2 3 29 29 H 1.09000 * 109.47506 * 95.50411 * 1 2 3 30 30 H 1.08994 * 109.47384 * 240.00545 * 2 1 3 31 31 H 1.08998 * 109.47512 * 119.99841 * 2 1 3 32 32 H 1.08005 * 119.82186 * 359.97438 * 7 6 4 33 33 H 1.07996 * 119.79370 * 179.72622 * 8 7 6 34 34 H 1.07994 * 119.97819 * 180.29593 * 9 8 7 35 35 H 0.96992 * 119.99816 * 179.97438 * 14 13 11 36 36 H 1.07998 * 120.20629 * 359.97438 * 19 6 4 37 37 H 1.09000 * 109.47721 * 300.00350 * 22 20 3 38 38 H 1.09003 * 109.46939 * 60.00726 * 22 20 3 39 39 H 1.09001 * 109.47005 * 179.97438 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 1.3708 2.3249 0.7119 5 8 1.6428 3.4989 0.5538 6 6 0.3293 1.9319 1.6856 7 6 0.2465 0.6062 2.1252 8 6 -0.7283 0.2298 3.0317 9 6 -1.6214 1.1577 3.5207 10 6 -1.5500 2.4972 3.0943 11 6 -2.4658 3.4522 3.5940 12 1 -3.4735 3.1548 3.8439 13 6 -2.0660 4.7824 3.7647 14 7 -0.8396 5.1385 3.4808 15 14 -3.2838 6.0496 4.3977 16 1 -3.2194 6.1004 5.8805 17 1 -2.9437 7.3839 3.8415 18 1 -4.6562 5.6720 3.9745 19 6 -0.5642 2.8805 2.1691 20 6 3.2103 1.7369 -0.7738 21 1 3.3536 2.8170 -0.7446 22 6 3.0299 1.2854 -2.2246 23 6 4.4343 1.0434 -0.1724 24 9 4.3176 -0.3402 -0.3437 25 9 5.5906 1.4970 -0.8162 26 9 4.5141 1.3392 1.1927 27 1 -0.3634 -0.8366 0.5969 28 1 -0.3634 0.9351 0.4261 29 1 -0.3634 -0.0986 -1.0229 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.9445 -0.1283 1.7513 33 1 -0.7867 -0.7969 3.3616 34 1 -2.3766 0.8573 4.2317 35 1 -0.5627 6.0605 3.5988 36 1 -0.5008 3.9060 1.8364 37 1 2.8865 0.2052 -2.2539 38 1 2.1579 1.7795 -2.6531 39 1 3.9166 1.5503 -2.8004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357914686.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:37 Heat of formation + Delta-G solvation = -126.797392 kcal Electronic energy + Delta-G solvation = -27638.178436 eV Core-core repulsion = 23325.382012 eV Total energy + Delta-G solvation = -4312.796424 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.19254 -48.69480 -48.66427 -41.99715 -39.10173 -37.77089 -35.90227 -34.30644 -31.51661 -31.34136 -30.49078 -27.41787 -27.13469 -25.18876 -24.24874 -22.76928 -22.42534 -20.73746 -19.71451 -19.52342 -19.14986 -18.58639 -17.72939 -17.46716 -17.07230 -16.67560 -16.05341 -15.64644 -15.54247 -15.29735 -15.10728 -15.08335 -14.88874 -14.83853 -14.75486 -14.47236 -14.19437 -14.16005 -13.77180 -13.61267 -13.19791 -13.12483 -12.89021 -12.77480 -12.60191 -12.44312 -12.42900 -11.95931 -11.89908 -11.58845 -11.35141 -10.98339 -10.82582 -9.95073 -9.32943 -8.98249 -8.50160 -6.36247 0.31270 1.05886 1.37549 1.43011 1.48602 1.51684 1.70858 2.00655 2.22630 2.65829 2.81611 2.93311 3.17860 3.60171 3.64340 3.81603 3.95688 4.03380 4.17068 4.38468 4.49305 4.55589 4.68646 4.74985 4.87280 4.92734 5.07177 5.09378 5.12567 5.20401 5.30019 5.36281 5.55060 5.62852 5.81836 5.93673 6.08346 6.18574 6.34235 6.63240 6.94312 6.98569 7.05904 8.42099 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.021114 B = 0.004116 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.821360 B = 6800.635130 C = 7422.151248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.570 3.430 5 O -0.574 6.574 6 C -0.150 4.150 7 C -0.175 4.175 8 C -0.118 4.118 9 C -0.198 4.198 10 C 0.056 3.944 11 C -0.500 4.500 12 H 0.080 0.920 13 C 0.023 3.977 14 N -0.846 5.846 15 Si 0.986 3.014 16 H -0.263 1.263 17 H -0.275 1.275 18 H -0.254 1.254 19 C -0.110 4.110 20 C 0.095 3.905 21 H 0.121 0.879 22 C -0.157 4.157 23 C 0.443 3.557 24 F -0.172 7.172 25 F -0.176 7.176 26 F -0.195 7.195 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.163 0.837 33 H 0.139 0.861 34 H 0.106 0.894 35 H 0.281 0.719 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.159 -11.600 -10.005 16.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.020 4.020 3 N -0.339 5.339 4 C 0.363 3.637 5 O -0.454 6.454 6 C -0.153 4.153 7 C -0.193 4.193 8 C -0.136 4.136 9 C -0.218 4.218 10 C 0.054 3.946 11 C -0.531 4.531 12 H 0.098 0.902 13 C -0.188 4.188 14 N -0.474 5.474 15 Si 0.807 3.193 16 H -0.188 1.188 17 H -0.200 1.200 18 H -0.178 1.178 19 C -0.131 4.131 20 C -0.012 4.012 21 H 0.139 0.861 22 C -0.214 4.214 23 C 0.387 3.613 24 F -0.153 7.153 25 F -0.158 7.158 26 F -0.176 7.176 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.180 0.820 33 H 0.157 0.843 34 H 0.125 0.875 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.467 -10.815 -10.082 16.565 hybrid contribution -0.134 1.052 0.743 1.294 sum 7.334 -9.764 -9.340 15.374 Atomic orbital electron populations 1.23284 0.94178 1.05442 1.02445 1.22227 0.95805 0.80081 1.03888 1.47827 1.27058 1.10908 1.48098 1.18840 0.81167 0.84399 0.79313 1.90687 1.67060 1.19801 1.67813 1.19515 0.98493 0.95987 1.01271 1.22029 1.01981 0.94354 1.00968 1.20899 0.95673 0.99253 0.97793 1.21502 1.02798 0.94031 1.03484 1.17906 0.93064 0.93195 0.90446 1.19797 0.99267 0.93713 1.40345 0.90221 1.26794 0.97173 1.01196 0.93686 1.69871 1.18764 1.19822 1.38927 0.85145 0.78730 0.76490 0.78962 1.18780 1.19993 1.17759 1.21619 0.96805 0.98114 0.96563 1.22279 0.81738 1.02520 0.94621 0.86097 1.22195 1.05424 1.04150 0.89620 1.21151 0.85996 0.77962 0.76143 1.93163 1.96028 1.31119 1.95030 1.93181 1.52372 1.88916 1.81302 1.93197 1.96706 1.93180 1.34565 0.89052 0.90578 0.92146 0.86685 0.89916 0.82036 0.84300 0.87541 0.90860 0.87896 0.88896 0.89770 0.88171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.01 7.92 71.98 0.57 -4.44 16 2 C 0.10 2.28 4.50 86.38 0.39 2.67 16 3 N -0.61 -18.40 2.50 -801.18 -2.01 -20.41 16 4 C 0.57 24.22 7.05 86.80 0.61 24.83 16 5 O -0.57 -28.96 15.83 -3.83 -0.06 -29.03 16 6 C -0.15 -6.77 3.86 -20.13 -0.08 -6.85 16 7 C -0.18 -6.45 5.61 22.70 0.13 -6.32 16 8 C -0.12 -4.41 9.88 22.18 0.22 -4.19 16 9 C -0.20 -8.96 9.78 22.77 0.22 -8.74 16 10 C 0.06 2.98 5.55 -21.32 -0.12 2.86 16 11 C -0.50 -27.23 9.06 23.47 0.21 -27.01 16 12 H 0.08 4.10 7.85 -2.91 -0.02 4.08 16 13 C 0.02 1.21 5.38 85.26 0.46 1.67 16 14 N -0.85 -48.12 10.65 21.83 0.23 -47.89 16 15 Si 0.99 40.34 29.56 68.60 2.03 42.37 16 16 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 17 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 19 C -0.11 -5.99 8.19 23.01 0.19 -5.80 16 20 C 0.09 2.41 2.72 44.99 0.12 2.53 16 21 H 0.12 3.59 6.94 -2.39 -0.02 3.57 16 22 C -0.16 -2.58 8.81 71.98 0.63 -1.95 16 23 C 0.44 10.97 2.78 71.98 0.20 11.17 16 24 F -0.17 -3.63 15.01 44.97 0.67 -2.96 16 25 F -0.18 -4.08 17.06 44.97 0.77 -3.32 16 26 F -0.19 -6.15 17.12 44.97 0.77 -5.38 16 27 H 0.09 2.04 6.99 -2.38 -0.02 2.02 16 28 H 0.08 2.68 3.40 -10.09 -0.03 2.65 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.12 1.82 5.73 -2.39 -0.01 1.81 16 31 H 0.08 1.80 6.06 -2.39 -0.01 1.78 16 32 H 0.16 4.69 3.17 -2.91 -0.01 4.68 16 33 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 34 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 35 H 0.28 14.89 8.30 -92.71 -0.77 14.13 16 36 H 0.10 6.32 5.83 -2.91 -0.02 6.31 16 37 H 0.09 1.19 5.96 -2.39 -0.01 1.18 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.10 1.27 7.98 -2.39 -0.02 1.26 16 Total: -1.00 -67.95 320.70 7.25 -60.70 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 1.09 Total: 25.47 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 3.76 Total: -19.57 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: -1.77 Total: -68.30 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.06 Total: -29.03 kcal Atomic # 9 Polarization: -13.86 SS G_CDS: 2.21 Total: -11.65 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -67.95 7.25 -60.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357914686.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.100 kcal (2) G-P(sol) polarization free energy of solvation -67.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds