Wall clock time and date at job start Tue Mar 31 2020 11:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47268 * 2 1 4 4 N 1.46499 * 109.47269 * 120.00080 * 2 1 3 5 5 C 1.34776 * 119.99906 * 275.00247 * 4 2 1 6 6 O 1.21283 * 120.00526 * 359.97438 * 5 4 2 7 7 C 1.50710 * 120.00008 * 180.02562 * 5 4 2 8 8 C 1.52994 * 109.47209 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47387 * 179.97438 * 8 7 5 10 10 H 1.08006 * 119.99900 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00507 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99817 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00230 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46737 * 60.00287 * 13 11 9 15 15 H 1.48505 * 109.47153 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47156 * 300.00204 * 13 11 9 17 17 C 1.50696 * 109.47353 * 240.00058 * 2 1 3 18 18 C 1.38257 * 120.00351 * 265.23271 * 17 2 1 19 19 C 1.38208 * 119.99870 * 180.27237 * 18 17 2 20 20 C 1.38261 * 120.00416 * 359.74807 * 19 18 17 21 21 C 1.38213 * 119.99652 * 359.97438 * 20 19 18 22 22 C 1.38217 * 119.99893 * 84.99626 * 17 2 1 23 23 C 1.50703 * 119.99908 * 0.02562 * 22 17 2 24 24 F 1.39905 * 109.47157 * 179.72409 * 23 22 17 25 25 F 1.39900 * 109.47159 * 59.72710 * 23 22 17 26 26 F 1.39897 * 109.47274 * 299.72401 * 23 22 17 27 27 H 1.08998 * 109.47773 * 59.99720 * 1 2 3 28 28 H 1.09003 * 109.47268 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47182 * 299.99851 * 1 2 3 30 30 H 0.96999 * 120.00099 * 95.00044 * 4 2 1 31 31 H 1.09003 * 109.46790 * 300.00063 * 7 5 4 32 32 H 1.08996 * 109.46866 * 59.99676 * 7 5 4 33 33 H 1.09003 * 109.47457 * 299.99851 * 8 7 5 34 34 H 1.09005 * 109.47415 * 59.99975 * 8 7 5 35 35 H 0.97000 * 119.99951 * 179.97438 * 12 11 9 36 36 H 1.07995 * 119.99773 * 359.97438 * 18 17 2 37 37 H 1.07999 * 119.99765 * 179.72298 * 19 18 17 38 38 H 1.07994 * 120.00177 * 179.97438 * 20 19 18 39 39 H 1.07995 * 119.99740 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8589 1.1586 2.4116 7 6 2.6499 -0.7286 3.5875 8 6 2.7018 0.2546 4.7586 9 6 3.2041 -0.4557 5.9890 10 1 3.4603 -1.5039 5.9407 11 6 3.3357 0.2319 7.1767 12 7 3.0233 1.5081 7.2357 13 14 3.9577 -0.6489 8.7021 14 1 5.3189 -1.1834 8.4445 15 1 4.0082 0.3055 9.8388 16 1 3.0410 -1.7686 9.0355 17 6 2.0323 -0.7104 -1.2304 18 6 2.3566 -2.0530 -1.1696 19 6 2.8227 -2.7030 -2.2967 20 6 2.9597 -2.0120 -3.4864 21 6 2.6301 -0.6712 -3.5486 22 6 2.1643 -0.0208 -2.4210 23 6 1.8063 1.4415 -2.4885 24 9 2.0278 1.9165 -3.7857 25 9 2.6011 2.1582 -1.5875 26 9 0.4578 1.6074 -2.1551 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 2.2490 -1.6318 1.1526 31 1 1.9777 -1.5509 3.8325 32 1 3.6492 -1.1203 3.3978 33 1 3.3743 1.0767 4.5133 34 1 1.7026 0.6468 4.9484 35 1 3.1155 1.9919 8.0714 36 1 2.2503 -2.5926 -0.2402 37 1 3.0803 -3.7507 -2.2481 38 1 3.3243 -2.5199 -4.3670 39 1 2.7375 -0.1313 -4.4777 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360026239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:25 Heat of formation + Delta-G solvation = -167.639982 kcal Electronic energy + Delta-G solvation = -26372.026339 eV Core-core repulsion = 22057.458847 eV Total energy + Delta-G solvation = -4314.567492 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.42547 -47.94730 -47.82586 -40.37004 -38.93747 -35.57987 -33.44278 -32.64987 -31.66595 -30.77766 -29.53019 -26.31599 -25.76412 -24.19268 -22.86422 -21.82726 -20.70285 -19.81187 -18.75005 -18.68954 -18.51190 -17.08813 -16.50541 -15.97799 -15.50158 -15.30965 -15.03815 -14.87230 -14.83691 -14.53387 -14.39752 -14.31953 -14.16392 -13.97674 -13.75965 -13.56976 -13.11819 -12.99567 -12.78234 -12.34367 -12.18624 -11.91210 -11.72580 -11.53350 -11.15843 -11.03463 -10.90298 -10.61431 -9.94856 -9.66621 -9.64743 -9.36505 -9.18051 -9.01661 -8.86357 -8.30873 -5.94924 -3.99605 0.51306 0.80491 2.41142 3.04926 3.23428 3.34923 3.37803 3.40272 3.42775 3.47394 3.76758 4.16534 4.18396 4.38753 4.48094 4.53245 4.85963 4.92650 5.06843 5.18964 5.23291 5.39800 5.42469 5.54690 5.67934 5.71572 5.79512 5.92914 6.03101 6.20277 6.22608 6.23549 6.32198 6.67133 6.88537 7.74703 7.81962 7.87264 8.08285 8.39199 8.75387 9.08731 9.63813 11.15963 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.022126 B = 0.002950 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.149935 B = 9488.982914 C =10191.014818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.161 3.839 3 H 0.106 0.894 4 N -0.739 5.739 5 C 0.511 3.489 6 O -0.528 6.528 7 C -0.129 4.129 8 C 0.037 3.963 9 C -0.528 4.528 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.889 5.889 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.031 4.031 18 C -0.119 4.119 19 C -0.080 4.080 20 C -0.127 4.127 21 C -0.068 4.068 22 C -0.178 4.178 23 C 0.505 3.495 24 F -0.178 7.178 25 F -0.168 7.168 26 F -0.169 7.169 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.395 0.605 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.261 0.739 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.291 -8.718 -25.978 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.056 3.944 3 H 0.124 0.876 4 N -0.395 5.395 5 C 0.300 3.700 6 O -0.403 6.403 7 C -0.169 4.169 8 C -0.001 4.001 9 C -0.566 4.566 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.528 5.528 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.032 4.032 18 C -0.137 4.137 19 C -0.098 4.098 20 C -0.145 4.145 21 C -0.086 4.086 22 C -0.180 4.180 23 C 0.451 3.549 24 F -0.160 7.160 25 F -0.149 7.149 26 F -0.150 7.150 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.231 0.769 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.519 -7.628 -25.778 27.000 hybrid contribution 0.414 -0.691 0.789 1.127 sum -2.105 -8.319 -24.989 26.421 Atomic orbital electron populations 1.22485 0.93448 1.02760 1.04397 1.20011 0.95006 0.97641 0.81762 0.87634 1.46368 1.69883 1.13862 1.09413 1.21621 0.76377 0.87693 0.84347 1.90682 1.48591 1.16288 1.84702 1.21875 1.00893 1.01074 0.93047 1.18898 0.98427 0.93327 0.89403 1.21178 1.44571 0.96279 0.94621 0.92671 1.25025 0.95553 0.94847 0.98945 1.69991 1.48025 1.08124 1.26642 0.86650 0.79338 0.79355 0.82559 1.20261 1.21288 1.20259 1.19847 0.95207 0.94513 0.93647 1.20968 1.00064 0.93239 0.99415 1.21405 0.95611 1.00414 0.92360 1.21174 1.00849 0.93790 0.98639 1.21011 0.95273 0.95150 0.97182 1.19774 1.09657 0.91899 0.96701 1.18335 0.74980 0.87919 0.73635 1.93158 1.94503 1.90052 1.38244 1.93242 1.73853 1.80344 1.67505 1.93134 1.33818 1.96165 1.91891 0.90050 0.92305 0.90867 0.76862 0.90180 0.90205 0.95771 0.95775 0.92883 0.84691 0.84746 0.84721 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 9.25 37.15 0.34 -1.86 16 2 C 0.16 2.18 2.13 -69.09 -0.15 2.03 16 3 H 0.11 1.71 5.17 -51.93 -0.27 1.45 16 4 N -0.74 -10.49 5.00 -54.93 -0.27 -10.77 16 5 C 0.51 9.87 7.79 -10.98 -0.09 9.78 16 6 O -0.53 -12.56 15.65 5.56 0.09 -12.47 16 7 C -0.13 -2.60 5.64 -27.88 -0.16 -2.76 16 8 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 9 C -0.53 -15.00 9.11 -34.44 -0.31 -15.32 16 10 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -27.56 13.29 55.43 0.74 -26.83 16 13 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 C -0.03 -0.34 5.02 -104.62 -0.53 -0.86 16 18 C -0.12 -1.00 9.23 -39.59 -0.37 -1.36 16 19 C -0.08 -0.52 10.05 -39.58 -0.40 -0.92 16 20 C -0.13 -0.81 10.05 -39.58 -0.40 -1.21 16 21 C -0.07 -0.54 9.43 -39.58 -0.37 -0.92 16 22 C -0.18 -1.85 5.37 -104.62 -0.56 -2.41 16 23 C 0.51 5.84 2.83 36.01 0.10 5.94 16 24 F -0.18 -1.87 15.97 2.25 0.04 -1.84 16 25 F -0.17 -2.32 15.31 2.25 0.03 -2.28 16 26 F -0.17 -2.01 13.62 2.25 0.03 -1.98 16 27 H 0.08 0.96 5.02 -51.93 -0.26 0.70 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 30 H 0.40 4.27 6.21 -40.82 -0.25 4.01 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.14 0.92 6.08 -52.49 -0.32 0.60 16 37 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 38 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 39 H 0.14 0.87 7.16 -52.49 -0.38 0.50 16 LS Contribution 335.89 15.07 5.06 5.06 Total: -1.00 -34.51 335.89 -6.80 -41.31 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -4.40 Total: 0.50 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -3.10 Total: -7.39 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.46 Total: -37.59 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.09 Total: -12.47 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 0.10 Total: -6.10 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.51 -6.80 -41.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360026239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.326 kcal (2) G-P(sol) polarization free energy of solvation -34.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds