Wall clock time and date at job start Tue Mar 31 2020 11:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46954 * 2 1 4 4 C 1.36866 * 119.99909 * 278.41066 * 3 2 1 5 5 H 1.08000 * 120.00277 * 229.85643 * 4 3 2 6 6 C 1.39045 * 119.99602 * 49.85961 * 4 3 2 7 7 N 1.31368 * 120.00330 * 37.25502 * 6 4 3 8 8 Si 1.86802 * 119.99870 * 217.25573 * 6 4 3 9 9 H 1.48504 * 109.47179 * 59.99839 * 8 6 4 10 10 H 1.48492 * 109.47498 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47268 * 300.00141 * 8 6 4 12 12 C 1.34780 * 120.00143 * 98.41859 * 3 2 1 13 13 O 1.21626 * 119.99830 * 185.49172 * 12 3 2 14 14 C 1.47443 * 119.99781 * 5.48531 * 12 3 2 15 15 C 1.39840 * 120.05837 * 312.00819 * 14 12 3 16 16 C 1.36545 * 120.12503 * 179.97438 * 15 14 12 17 17 C 1.39594 * 120.23195 * 359.97438 * 16 15 14 18 18 C 1.48275 * 119.94855 * 179.97438 * 17 16 15 19 19 C 1.39774 * 120.92350 * 359.72588 * 18 17 16 20 20 N 1.32185 * 118.94300 * 179.73356 * 19 18 17 21 21 C 1.31841 * 120.95205 * 0.53139 * 20 19 18 22 22 N 1.31846 * 122.05513 * 359.74423 * 21 20 19 23 23 C 1.32178 * 120.95084 * 359.97438 * 22 21 20 24 24 C 1.39400 * 120.10437 * 0.02562 * 17 16 15 25 25 C 1.38039 * 119.87570 * 359.97438 * 24 17 16 26 26 F 1.35104 * 120.11438 * 180.02562 * 25 24 17 27 27 H 1.09009 * 109.46902 * 83.72607 * 1 2 3 28 28 H 1.09001 * 109.47390 * 203.72643 * 1 2 3 29 29 H 1.09005 * 109.47038 * 323.72827 * 1 2 3 30 30 H 1.09000 * 109.46982 * 239.99990 * 2 1 3 31 31 H 1.09000 * 109.46759 * 119.99787 * 2 1 3 32 32 H 0.97003 * 120.00013 * 180.02562 * 7 6 4 33 33 H 1.08003 * 119.93477 * 0.02562 * 15 14 12 34 34 H 1.08005 * 119.88311 * 180.28203 * 16 15 14 35 35 H 1.07996 * 120.53169 * 359.97438 * 19 18 17 36 36 H 1.07991 * 118.97786 * 179.72018 * 21 20 19 37 37 H 1.07997 * 120.52988 * 179.97438 * 23 22 21 38 38 H 1.07996 * 120.06587 * 179.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0829 2.0842 -1.1726 5 1 2.9909 2.6035 -1.4416 6 6 0.9795 2.1298 -2.0174 7 7 -0.2317 2.1950 -1.5131 8 14 1.2195 2.0985 -3.8697 9 1 1.9168 0.8459 -4.2574 10 1 -0.1034 2.1574 -4.5414 11 1 2.0364 3.2679 -4.2829 12 6 2.4040 1.9597 1.1546 13 8 2.7143 3.1356 1.1717 14 6 2.4497 1.1670 2.3970 15 6 1.3644 0.3605 2.7535 16 6 1.4054 -0.3746 3.9035 17 6 2.5300 -0.3260 4.7290 18 6 2.5676 -1.1263 5.9766 19 6 1.4862 -1.9308 6.3468 20 7 1.5638 -2.6322 7.4646 21 6 2.6357 -2.5721 8.2298 22 7 3.6750 -1.8220 7.9206 23 6 3.6833 -1.0929 6.8182 24 6 3.6173 0.4748 4.3829 25 6 3.5805 1.2197 3.2213 26 9 4.6319 1.9970 2.8809 27 1 -0.3633 0.1123 -1.0216 28 1 -0.3634 -0.9408 0.4135 29 1 -0.3633 0.8286 0.6080 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 -1.0015 2.2264 -2.1025 33 1 0.4924 0.3183 2.1177 34 1 0.5668 -0.9997 4.1728 35 1 0.6029 -1.9817 5.7275 36 1 2.6632 -3.1550 9.1385 37 1 4.5381 -0.4807 6.5717 38 1 4.4869 0.5123 5.0222 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360574635.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:49 Heat of formation + Delta-G solvation = -1.078949 kcal Electronic energy + Delta-G solvation = -25496.776883 eV Core-core repulsion = 21640.121206 eV Total energy + Delta-G solvation = -3856.655677 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.97355 -42.08345 -41.00977 -39.26409 -37.01890 -34.82908 -34.75057 -33.81013 -32.03567 -31.19847 -30.71661 -27.33431 -25.94594 -25.78495 -24.01120 -23.40471 -23.25593 -21.28884 -19.11696 -18.81447 -18.57518 -18.41019 -18.03136 -17.08853 -17.02471 -16.67476 -16.26573 -16.09400 -15.79976 -15.73345 -15.33295 -14.97186 -14.79249 -14.54452 -14.12053 -14.05424 -13.80247 -13.59760 -13.44269 -13.20311 -13.00761 -12.73681 -12.48686 -12.25153 -12.15312 -11.90904 -11.88013 -11.80100 -11.21772 -10.77816 -10.32909 -10.24850 -9.95817 -9.48463 -9.31201 -8.42564 -6.10616 -0.85463 0.05896 0.11525 0.39268 1.37984 1.43041 1.52390 1.97650 2.28691 2.47631 2.81048 2.89618 2.92245 3.03478 3.17959 3.23533 3.41390 3.54889 3.57805 3.87608 3.94310 4.08832 4.20126 4.29419 4.43146 4.62020 4.67040 4.71353 4.73436 4.89900 4.98057 5.06960 5.20657 5.23242 5.27390 5.35924 5.49672 5.67326 5.82085 5.93348 6.23956 6.53883 7.04624 7.15919 7.33968 8.03438 8.56049 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.025898 B = 0.003360 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.917042 B = 8331.962317 C = 9113.708648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.098 3.902 3 N -0.436 5.436 4 C -0.388 4.388 5 H 0.051 0.949 6 C 0.038 3.962 7 N -0.837 5.837 8 Si 0.965 3.035 9 H -0.259 1.259 10 H -0.270 1.270 11 H -0.280 1.280 12 C 0.478 3.522 13 O -0.624 6.624 14 C -0.158 4.158 15 C -0.068 4.068 16 C -0.104 4.104 17 C 0.005 3.995 18 C -0.151 4.151 19 C 0.165 3.835 20 N -0.531 5.531 21 C 0.288 3.712 22 N -0.534 5.534 23 C 0.156 3.844 24 C -0.138 4.138 25 C 0.114 3.886 26 F -0.147 7.147 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.277 0.723 33 H 0.151 0.849 34 H 0.179 0.821 35 H 0.200 0.800 36 H 0.223 0.777 37 H 0.187 0.813 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 -14.613 14.781 20.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.024 4.024 3 N -0.154 5.154 4 C -0.515 4.515 5 H 0.069 0.931 6 C -0.172 4.172 7 N -0.469 5.469 8 Si 0.787 3.213 9 H -0.183 1.183 10 H -0.195 1.195 11 H -0.206 1.206 12 C 0.268 3.732 13 O -0.511 6.511 14 C -0.162 4.162 15 C -0.086 4.086 16 C -0.122 4.122 17 C 0.003 3.997 18 C -0.155 4.155 19 C -0.001 4.001 20 N -0.244 5.244 21 C 0.002 3.998 22 N -0.247 5.247 23 C -0.009 4.009 24 C -0.157 4.157 25 C 0.094 3.906 26 F -0.125 7.125 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.168 0.832 34 H 0.197 0.803 35 H 0.216 0.784 36 H 0.240 0.760 37 H 0.204 0.796 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.154 -14.584 15.561 21.327 hybrid contribution 0.460 1.536 -2.090 2.634 sum 0.614 -13.049 13.471 18.764 Atomic orbital electron populations 1.22128 0.94535 1.00345 1.02723 1.21952 0.95898 0.82546 1.02017 1.43650 1.55817 1.11350 1.04569 1.18906 0.98593 1.37489 0.96502 0.93121 1.26084 0.93713 0.93314 1.04106 1.70347 0.99401 1.38913 1.38228 0.85492 0.78037 0.79391 0.78332 1.18337 1.19490 1.20579 1.19100 0.83124 0.86561 0.84368 1.90596 1.55607 1.18575 1.86335 1.20472 0.96957 1.01878 0.96924 1.21397 0.96896 0.92834 0.97514 1.21236 0.98812 0.99614 0.92524 1.18340 0.93410 0.94864 0.93054 1.20364 0.98160 1.00796 0.96209 1.23904 0.97461 0.87081 0.91678 1.68544 1.27618 1.22227 1.06033 1.25666 0.83437 0.92193 0.98486 1.68520 1.29583 1.08365 1.18256 1.23788 0.97019 0.92488 0.87640 1.21212 1.01576 0.97721 0.95150 1.17927 0.84056 0.93181 0.95478 1.91488 1.55335 1.73224 1.92462 0.93069 0.90286 0.93901 0.91799 0.89470 0.91346 0.83172 0.80332 0.78375 0.76038 0.79599 0.81393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 6.99 71.98 0.50 -4.61 16 2 C 0.10 3.90 5.39 86.38 0.47 4.36 16 3 N -0.44 -22.56 2.52 -639.24 -1.61 -24.17 16 4 C -0.39 -22.34 8.50 84.10 0.71 -21.62 16 5 H 0.05 3.19 8.04 -2.91 -0.02 3.17 16 6 C 0.04 1.99 4.54 84.96 0.39 2.38 16 7 N -0.84 -43.73 10.40 21.68 0.23 -43.51 16 8 Si 0.96 40.73 29.68 68.60 2.04 42.76 16 9 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 10 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 12 C 0.48 25.43 6.97 86.67 0.60 26.04 16 13 O -0.62 -39.75 16.57 -4.11 -0.07 -39.82 16 14 C -0.16 -6.28 5.00 -20.03 -0.10 -6.38 16 15 C -0.07 -2.00 7.38 22.26 0.16 -1.84 16 16 C -0.10 -2.06 9.38 22.20 0.21 -1.85 16 17 C 0.01 0.10 5.88 -20.00 -0.12 -0.02 16 18 C -0.15 -2.43 5.91 -19.86 -0.12 -2.54 16 19 C 0.16 2.35 10.70 85.01 0.91 3.26 16 20 N -0.53 -8.63 10.42 -199.14 -2.08 -10.70 16 21 C 0.29 4.29 12.27 180.85 2.22 6.51 16 22 N -0.53 -9.24 10.42 -199.14 -2.08 -11.31 16 23 C 0.16 2.50 10.70 85.01 0.91 3.41 16 24 C -0.14 -3.32 9.42 22.50 0.21 -3.11 16 25 C 0.11 4.05 7.25 22.66 0.16 4.22 16 26 F -0.15 -6.12 16.47 44.97 0.74 -5.38 16 27 H 0.05 2.09 6.24 -2.38 -0.01 2.08 16 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.04 1.78 6.76 -2.38 -0.02 1.76 16 30 H 0.06 2.49 8.11 -2.39 -0.02 2.47 16 31 H 0.09 2.89 5.16 -2.39 -0.01 2.88 16 32 H 0.28 13.30 8.31 -92.71 -0.77 12.53 16 33 H 0.15 4.49 4.32 -2.91 -0.01 4.47 16 34 H 0.18 1.88 6.27 -2.91 -0.02 1.86 16 35 H 0.20 1.60 6.33 -2.91 -0.02 1.58 16 36 H 0.22 1.80 8.06 -2.92 -0.02 1.78 16 37 H 0.19 2.20 6.33 -2.91 -0.02 2.18 16 38 H 0.17 2.91 6.28 -2.91 -0.02 2.89 16 Total: -1.00 -78.82 322.40 5.43 -73.39 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 1.14 Total: 10.54 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 7.12 Total: 8.20 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -5.54 Total: -89.70 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -0.07 Total: -39.82 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.74 Total: -5.38 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.04 Total: 42.76 kcal Total: -78.82 5.43 -73.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360574635.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.311 kcal (2) G-P(sol) polarization free energy of solvation -78.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds