Wall clock time and date at job start Tue Mar 31 2020 11:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 120.00034 * 2 1 4 4 C 1.50702 * 109.47221 * 270.00064 * 3 2 1 5 5 H 1.08001 * 119.99969 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99941 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00016 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99964 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47220 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.46988 * 120.00445 * 8 6 4 11 11 H 1.48506 * 109.47077 * 240.00365 * 8 6 4 12 12 C 1.34778 * 120.00305 * 180.02562 * 2 1 3 13 13 O 1.21586 * 120.00261 * 184.40579 * 12 2 1 14 14 C 1.47571 * 119.99430 * 4.40363 * 12 2 1 15 15 C 1.39783 * 120.04871 * 310.91322 * 14 12 2 16 16 C 1.37568 * 120.00407 * 179.72948 * 15 14 12 17 17 C 1.39594 * 120.09514 * 0.30016 * 16 15 14 18 18 C 1.48295 * 119.94901 * 179.97438 * 17 16 15 19 19 C 1.39759 * 120.92554 * 359.72083 * 18 17 16 20 20 N 1.32188 * 118.94832 * 179.78847 * 19 18 17 21 21 C 1.31835 * 120.94373 * 0.47559 * 20 19 18 22 22 N 1.31838 * 122.05868 * 359.77032 * 21 20 19 23 23 C 1.32183 * 120.94921 * 359.97438 * 22 21 20 24 24 C 1.39346 * 120.09545 * 359.97438 * 17 16 15 25 25 C 1.38030 * 119.99796 * 359.97438 * 24 17 16 26 26 F 1.35101 * 120.05094 * 180.02562 * 25 24 17 27 27 H 1.09001 * 109.47030 * 273.01221 * 1 2 3 28 28 H 1.09005 * 109.46840 * 33.01193 * 1 2 3 29 29 H 1.09000 * 109.47015 * 153.01340 * 1 2 3 30 30 H 1.09004 * 109.46803 * 30.00201 * 3 2 1 31 31 H 1.08997 * 109.47267 * 150.00127 * 3 2 1 32 32 H 0.96993 * 120.00305 * 180.02562 * 7 6 4 33 33 H 1.08008 * 119.99833 * 0.02562 * 15 14 12 34 34 H 1.08000 * 119.95320 * 180.28018 * 16 15 14 35 35 H 1.08007 * 120.52560 * 0.02562 * 19 18 17 36 36 H 1.08007 * 118.96818 * 179.75393 * 21 20 19 37 37 H 1.07998 * 120.53085 * 179.97438 * 23 22 21 38 38 H 1.08000 * 120.00239 * 179.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1260 2.8781 -1.6727 7 7 3.5534 3.6182 -0.6731 8 14 3.4368 3.4177 -3.4339 9 1 2.8588 2.4178 -4.3673 10 1 2.7988 4.7383 -3.6668 11 1 4.8993 3.5264 -3.6676 12 6 2.1390 -1.1672 -0.0005 13 8 3.3521 -1.1688 0.0804 14 6 1.4043 -2.4432 -0.0992 15 6 0.3098 -2.6871 0.7354 16 6 -0.3778 -3.8747 0.6388 17 6 0.0196 -4.8402 -0.2878 18 6 -0.7236 -6.1195 -0.3888 19 6 -1.8201 -6.3804 0.4376 20 7 -2.4568 -7.5319 0.3114 21 6 -2.0651 -8.4300 -0.5707 22 7 -1.0334 -8.2263 -1.3658 23 6 -0.3435 -7.1002 -1.3093 24 6 1.1136 -4.6037 -1.1178 25 6 1.8056 -3.4131 -1.0249 26 9 2.8661 -3.1824 -1.8295 27 1 -0.3633 0.0540 1.0263 28 1 -0.3633 0.8618 -0.5599 29 1 -0.3633 -0.9158 -0.4663 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1385 0.5138 32 1 4.0295 4.4444 -0.8502 33 1 0.0010 -1.9412 1.4529 34 1 -1.2261 -4.0604 1.2809 35 1 -2.1445 -5.6510 1.1651 36 1 -2.6062 -9.3618 -0.6440 37 1 0.5008 -6.9406 -1.9636 38 1 1.4199 -5.3519 -1.8339 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360577466.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:14 Heat of formation + Delta-G solvation = 4.850527 kcal Electronic energy + Delta-G solvation = -24869.968736 eV Core-core repulsion = 21013.570181 eV Total energy + Delta-G solvation = -3856.398555 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.83431 -41.48346 -39.82742 -38.19766 -34.97486 -34.23486 -33.87269 -32.60470 -31.06452 -30.03765 -27.80751 -26.23752 -25.29127 -25.23221 -23.30153 -22.62990 -21.91976 -19.42567 -18.25481 -17.91610 -17.56488 -16.86654 -16.58374 -16.21912 -15.77079 -15.37354 -15.27948 -15.16667 -14.68916 -14.47160 -14.28314 -14.13086 -13.83582 -13.51010 -13.01170 -12.81399 -12.51765 -12.36327 -12.18984 -11.92553 -11.67782 -11.29758 -11.27608 -11.23765 -10.92284 -10.69094 -10.46234 -10.20933 -9.67905 -9.67468 -9.22377 -9.10247 -8.59598 -8.47500 -7.77040 -6.08936 -4.13984 -0.15917 0.61839 0.94354 1.14498 2.97000 3.27831 3.32389 3.36180 3.41281 3.53681 3.64454 3.73201 3.78501 3.90154 4.04673 4.17652 4.31375 4.41170 4.61770 4.73278 4.81743 4.96457 4.98307 5.25685 5.26320 5.37052 5.56352 5.71313 5.71813 5.81026 5.88856 5.95266 5.99417 6.13251 6.44747 6.54581 6.94542 7.35135 7.42460 7.60417 7.86994 8.16424 8.23402 8.77886 8.94412 9.51346 10.99287 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.026482 B = 0.002864 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.067260 B = 9774.590853 C =10149.839851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.591 5.591 3 C 0.244 3.756 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.544 3.456 13 O -0.524 6.524 14 C -0.139 4.139 15 C -0.058 4.058 16 C -0.125 4.125 17 C -0.008 4.008 18 C -0.145 4.145 19 C 0.160 3.840 20 N -0.516 5.516 21 C 0.289 3.711 22 N -0.515 5.515 23 C 0.159 3.841 24 C -0.150 4.150 25 C 0.153 3.847 26 F -0.117 7.117 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.036 0.964 31 H 0.047 0.953 32 H 0.264 0.736 33 H 0.146 0.854 34 H 0.137 0.863 35 H 0.174 0.826 36 H 0.198 0.802 37 H 0.172 0.828 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.535 -19.827 2.708 24.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.322 5.322 3 C 0.125 3.875 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.330 3.670 13 O -0.400 6.400 14 C -0.144 4.144 15 C -0.077 4.077 16 C -0.143 4.143 17 C -0.010 4.010 18 C -0.149 4.149 19 C -0.006 4.006 20 N -0.228 5.228 21 C 0.003 3.997 22 N -0.228 5.228 23 C -0.007 4.007 24 C -0.169 4.169 25 C 0.133 3.867 26 F -0.095 7.095 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.163 0.837 34 H 0.155 0.845 35 H 0.190 0.810 36 H 0.214 0.786 37 H 0.189 0.811 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.264 -20.485 2.689 24.552 hybrid contribution 0.802 1.256 -1.109 1.858 sum -12.463 -19.229 1.580 22.969 Atomic orbital electron populations 1.21871 0.81296 1.02910 1.00683 1.48098 1.06346 1.07450 1.70288 1.19385 0.92721 0.77555 0.97812 1.21450 1.36745 1.06404 0.92154 0.92355 1.24933 0.95228 0.96325 0.97558 1.69936 1.38284 1.14312 1.30713 0.86428 0.78168 0.78316 0.84457 1.19752 1.20902 1.20782 1.17886 0.87220 0.83099 0.78836 1.90811 1.13110 1.86745 1.49378 1.20529 0.98507 0.96577 0.98749 1.21252 0.92163 0.97047 0.97197 1.21087 1.00995 0.93160 0.99026 1.18212 0.94318 0.92262 0.96204 1.20503 0.98623 0.95964 0.99827 1.23445 0.89044 0.93436 0.94663 1.68444 1.30659 1.02789 1.20944 1.25086 0.90266 0.97960 0.86410 1.68443 1.07755 1.22080 1.24506 1.23473 0.96455 0.87268 0.93507 1.21008 0.96882 0.96835 1.02170 1.17467 0.85635 0.93345 0.90276 1.91609 1.52951 1.94579 1.70371 0.93286 0.90575 0.91972 0.94567 0.93484 0.92680 0.83669 0.84513 0.80953 0.78558 0.81094 0.83986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 9.09 59.85 0.54 1.69 16 2 N -0.59 -12.35 2.86 -184.17 -0.53 -12.88 16 3 C 0.24 6.30 5.21 -5.19 -0.03 6.28 16 4 C -0.53 -14.94 9.39 -34.44 -0.32 -15.27 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.54 11.54 7.00 -12.45 -0.09 11.45 16 13 O -0.52 -13.55 16.18 5.29 0.09 -13.47 16 14 C -0.14 -2.20 4.90 -104.87 -0.51 -2.71 16 15 C -0.06 -0.65 7.59 -39.25 -0.30 -0.94 16 16 C -0.12 -1.06 9.43 -39.32 -0.37 -1.43 16 17 C -0.01 -0.07 5.88 -104.84 -0.62 -0.69 16 18 C -0.14 -1.18 5.91 -104.62 -0.62 -1.80 16 19 C 0.16 1.21 10.70 -16.83 -0.18 1.03 16 20 N -0.52 -4.44 10.42 -14.30 -0.15 -4.59 16 21 C 0.29 2.29 12.27 -92.08 -1.13 1.16 16 22 N -0.52 -4.65 10.42 -14.30 -0.15 -4.80 16 23 C 0.16 1.31 10.70 -16.83 -0.18 1.13 16 24 C -0.15 -1.62 9.41 -39.25 -0.37 -1.99 16 25 C 0.15 2.30 7.25 -39.02 -0.28 2.02 16 26 F -0.12 -2.12 16.49 2.25 0.04 -2.08 16 27 H 0.05 0.59 7.55 -51.93 -0.39 0.20 16 28 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 29 H 0.06 0.79 5.68 -51.93 -0.29 0.50 16 30 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 31 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.15 1.38 6.55 -52.48 -0.34 1.04 16 34 H 0.14 0.69 6.28 -52.49 -0.33 0.36 16 35 H 0.17 0.82 6.33 -52.48 -0.33 0.49 16 36 H 0.20 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.17 1.06 6.33 -52.49 -0.33 0.73 16 38 H 0.14 1.16 6.28 -52.49 -0.33 0.83 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -35.69 333.39 -8.06 -43.74 By element: Atomic # 1 Polarization: -0.21 SS G_CDS: -3.54 Total: -3.75 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -4.55 Total: 1.60 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: -0.09 Total: -47.89 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.47 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.69 -8.06 -43.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360577466.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.594 kcal (2) G-P(sol) polarization free energy of solvation -35.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds