Wall clock time and date at job start Tue Mar 31 2020 11:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 120.00034 * 2 1 4 4 C 1.50702 * 109.47221 * 270.00064 * 3 2 1 5 5 H 1.08001 * 119.99969 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99941 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00016 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99964 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47220 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.46988 * 120.00445 * 8 6 4 11 11 H 1.48506 * 109.47077 * 240.00365 * 8 6 4 12 12 C 1.34778 * 120.00305 * 180.02562 * 2 1 3 13 13 O 1.21586 * 120.00261 * 184.40579 * 12 2 1 14 14 C 1.47571 * 119.99430 * 4.40363 * 12 2 1 15 15 C 1.39783 * 120.04871 * 310.91322 * 14 12 2 16 16 C 1.37568 * 120.00407 * 179.72948 * 15 14 12 17 17 C 1.39594 * 120.09514 * 0.30016 * 16 15 14 18 18 C 1.48295 * 119.94901 * 179.97438 * 17 16 15 19 19 C 1.39759 * 120.92554 * 359.72083 * 18 17 16 20 20 N 1.32188 * 118.94832 * 179.78847 * 19 18 17 21 21 C 1.31835 * 120.94373 * 0.47559 * 20 19 18 22 22 N 1.31838 * 122.05868 * 359.77032 * 21 20 19 23 23 C 1.32183 * 120.94921 * 359.97438 * 22 21 20 24 24 C 1.39346 * 120.09545 * 359.97438 * 17 16 15 25 25 C 1.38030 * 119.99796 * 359.97438 * 24 17 16 26 26 F 1.35101 * 120.05094 * 180.02562 * 25 24 17 27 27 H 1.09001 * 109.47030 * 273.01221 * 1 2 3 28 28 H 1.09005 * 109.46840 * 33.01193 * 1 2 3 29 29 H 1.09000 * 109.47015 * 153.01340 * 1 2 3 30 30 H 1.09004 * 109.46803 * 30.00201 * 3 2 1 31 31 H 1.08997 * 109.47267 * 150.00127 * 3 2 1 32 32 H 0.96993 * 120.00305 * 180.02562 * 7 6 4 33 33 H 1.08008 * 119.99833 * 0.02562 * 15 14 12 34 34 H 1.08000 * 119.95320 * 180.28018 * 16 15 14 35 35 H 1.08007 * 120.52560 * 0.02562 * 19 18 17 36 36 H 1.08007 * 118.96818 * 179.75393 * 21 20 19 37 37 H 1.07998 * 120.53085 * 179.97438 * 23 22 21 38 38 H 1.08000 * 120.00239 * 179.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1260 2.8781 -1.6727 7 7 3.5534 3.6182 -0.6731 8 14 3.4368 3.4177 -3.4339 9 1 2.8588 2.4178 -4.3673 10 1 2.7988 4.7383 -3.6668 11 1 4.8993 3.5264 -3.6676 12 6 2.1390 -1.1672 -0.0005 13 8 3.3521 -1.1688 0.0804 14 6 1.4043 -2.4432 -0.0992 15 6 0.3098 -2.6871 0.7354 16 6 -0.3778 -3.8747 0.6388 17 6 0.0196 -4.8402 -0.2878 18 6 -0.7236 -6.1195 -0.3888 19 6 -1.8201 -6.3804 0.4376 20 7 -2.4568 -7.5319 0.3114 21 6 -2.0651 -8.4300 -0.5707 22 7 -1.0334 -8.2263 -1.3658 23 6 -0.3435 -7.1002 -1.3093 24 6 1.1136 -4.6037 -1.1178 25 6 1.8056 -3.4131 -1.0249 26 9 2.8661 -3.1824 -1.8295 27 1 -0.3633 0.0540 1.0263 28 1 -0.3633 0.8618 -0.5599 29 1 -0.3633 -0.9158 -0.4663 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1385 0.5138 32 1 4.0295 4.4444 -0.8502 33 1 0.0010 -1.9412 1.4529 34 1 -1.2261 -4.0604 1.2809 35 1 -2.1445 -5.6510 1.1651 36 1 -2.6062 -9.3618 -0.6440 37 1 0.5008 -6.9406 -1.9636 38 1 1.4199 -5.3519 -1.8339 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360577466.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:13 Heat of formation + Delta-G solvation = -18.452565 kcal Electronic energy + Delta-G solvation = -24870.979234 eV Core-core repulsion = 21013.570181 eV Total energy + Delta-G solvation = -3857.409053 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.04856 -42.09941 -41.11649 -39.39574 -36.72214 -35.03064 -34.81813 -34.37679 -31.96921 -31.05065 -29.55906 -27.58186 -26.36078 -25.93462 -24.90694 -23.44806 -23.04877 -20.80904 -18.98189 -18.75410 -18.61992 -18.45962 -18.17245 -17.41294 -17.10838 -16.72460 -16.35364 -16.16641 -15.93803 -15.81501 -15.47258 -14.87670 -14.61458 -14.56288 -14.39057 -14.14577 -13.83425 -13.65718 -13.49048 -13.40768 -13.08495 -12.86245 -12.58569 -12.52245 -12.26534 -11.97169 -11.89890 -11.74185 -11.32617 -10.85104 -10.68145 -10.25945 -9.99427 -9.57760 -9.41166 -8.26791 -6.41555 -0.90553 0.04554 0.06885 0.33293 1.33585 1.36394 1.47822 1.66832 2.16857 2.37031 2.47273 2.88436 2.92977 3.03011 3.15430 3.22283 3.34382 3.46249 3.50238 3.65616 3.92675 4.03231 4.16149 4.32479 4.40064 4.57908 4.66015 4.68927 4.79687 4.91507 4.94035 4.99399 5.07567 5.17959 5.20995 5.34402 5.48950 5.61753 5.76474 5.92244 6.00542 6.58259 6.67670 7.03742 7.17957 7.33349 8.80692 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.026482 B = 0.002864 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.067260 B = 9774.590853 C =10149.839851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.597 5.597 3 C 0.258 3.742 4 C -0.546 4.546 5 H 0.049 0.951 6 C 0.010 3.990 7 N -0.925 5.925 8 Si 0.967 3.033 9 H -0.270 1.270 10 H -0.265 1.265 11 H -0.281 1.281 12 C 0.537 3.463 13 O -0.591 6.591 14 C -0.169 4.169 15 C -0.049 4.049 16 C -0.102 4.102 17 C 0.012 3.988 18 C -0.155 4.155 19 C 0.168 3.832 20 N -0.532 5.532 21 C 0.289 3.711 22 N -0.537 5.537 23 C 0.155 3.845 24 C -0.142 4.142 25 C 0.119 3.881 26 F -0.148 7.148 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.034 0.966 31 H 0.000 1.000 32 H 0.269 0.731 33 H 0.166 0.834 34 H 0.186 0.814 35 H 0.205 0.795 36 H 0.222 0.778 37 H 0.185 0.815 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.882 -21.715 2.800 27.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.327 5.327 3 C 0.136 3.864 4 C -0.585 4.585 5 H 0.067 0.933 6 C -0.190 4.190 7 N -0.565 5.565 8 Si 0.791 3.209 9 H -0.194 1.194 10 H -0.190 1.190 11 H -0.207 1.207 12 C 0.325 3.675 13 O -0.473 6.473 14 C -0.173 4.173 15 C -0.067 4.067 16 C -0.120 4.120 17 C 0.010 3.990 18 C -0.159 4.159 19 C 0.002 3.998 20 N -0.245 5.245 21 C 0.003 3.997 22 N -0.250 5.250 23 C -0.011 4.011 24 C -0.161 4.161 25 C 0.099 3.901 26 F -0.127 7.127 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.052 0.948 31 H 0.018 0.982 32 H 0.078 0.922 33 H 0.183 0.817 34 H 0.203 0.797 35 H 0.222 0.778 36 H 0.238 0.762 37 H 0.202 0.798 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -16.675 -22.386 2.784 28.053 hybrid contribution 1.721 1.669 -1.073 2.626 sum -14.955 -20.718 1.711 25.608 Atomic orbital electron populations 1.22207 0.77475 1.04039 1.03345 1.48092 1.08716 1.05911 1.69981 1.18852 0.91373 0.79924 0.96202 1.21690 1.37212 1.06654 0.92914 0.93288 1.25834 0.94751 0.96342 1.02028 1.70040 1.38740 1.14785 1.32902 0.85381 0.77962 0.78498 0.79059 1.19422 1.18955 1.20694 1.18758 0.86836 0.84842 0.77032 1.90749 1.16253 1.87989 1.52277 1.20176 1.00858 0.94214 1.02021 1.21457 0.90454 0.98646 0.96153 1.21547 1.01056 0.91109 0.98261 1.18377 0.92982 0.92683 0.94958 1.20382 0.99320 0.95391 1.00794 1.23970 0.88015 0.93536 0.94302 1.68554 1.31153 1.03374 1.21421 1.25652 0.89775 0.98684 0.85543 1.68518 1.08540 1.22571 1.25361 1.23792 0.96596 0.87160 0.93524 1.21188 0.96676 0.95456 1.02737 1.17896 0.86077 0.95070 0.91037 1.91521 1.54746 1.94978 1.71449 0.89486 0.91384 0.89143 0.94768 0.98160 0.92241 0.81706 0.79671 0.77847 0.76194 0.79840 0.81842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.04 9.09 127.77 1.16 3.20 16 2 N -0.60 -25.82 2.86 -854.85 -2.44 -28.27 16 3 C 0.26 14.07 5.21 85.63 0.45 14.51 16 4 C -0.55 -32.16 9.39 25.60 0.24 -31.92 16 5 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 6 C 0.01 0.57 5.46 84.65 0.46 1.03 16 7 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 8 Si 0.97 45.61 29.54 68.60 2.03 47.63 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 10 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 C 0.54 23.91 7.00 86.71 0.61 24.52 16 13 O -0.59 -33.13 16.18 -3.99 -0.06 -33.20 16 14 C -0.17 -5.31 4.90 -20.03 -0.10 -5.41 16 15 C -0.05 -0.94 7.59 22.49 0.17 -0.77 16 16 C -0.10 -1.22 9.43 22.44 0.21 -1.01 16 17 C 0.01 0.17 5.88 -20.01 -0.12 0.05 16 18 C -0.15 -1.90 5.91 -19.86 -0.12 -2.02 16 19 C 0.17 1.73 10.70 85.01 0.91 2.64 16 20 N -0.53 -7.11 10.42 -199.14 -2.08 -9.19 16 21 C 0.29 3.69 12.27 180.86 2.22 5.91 16 22 N -0.54 -8.25 10.42 -199.15 -2.08 -10.32 16 23 C 0.15 2.10 10.70 85.01 0.91 3.01 16 24 C -0.14 -2.81 9.41 22.49 0.21 -2.60 16 25 C 0.12 3.64 7.25 22.64 0.16 3.80 16 26 F -0.15 -5.75 16.49 44.97 0.74 -5.01 16 27 H 0.09 1.84 7.55 -2.39 -0.02 1.83 16 28 H 0.07 2.07 8.10 -2.38 -0.02 2.05 16 29 H 0.09 2.09 5.68 -2.39 -0.01 2.07 16 30 H 0.03 1.84 8.07 -2.38 -0.02 1.83 16 31 H 0.00 0.02 7.36 -2.39 -0.02 0.00 16 32 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 33 H 0.17 2.48 6.55 -2.91 -0.02 2.46 16 34 H 0.19 0.47 6.28 -2.91 -0.02 0.45 16 35 H 0.21 0.61 6.33 -2.91 -0.02 0.59 16 36 H 0.22 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.18 1.81 6.33 -2.91 -0.02 1.79 16 38 H 0.16 2.39 6.28 -2.91 -0.02 2.37 16 Total: -1.00 -85.25 333.39 4.90 -80.36 By element: Atomic # 1 Polarization: -2.17 SS G_CDS: 1.12 Total: -1.05 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 7.38 Total: 14.96 kcal Atomic # 7 Polarization: -97.38 SS G_CDS: -6.31 Total: -103.69 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.06 Total: -33.20 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.74 Total: -5.01 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -85.25 4.90 -80.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360577466.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.903 kcal (2) G-P(sol) polarization free energy of solvation -85.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds