Wall clock time and date at job start Tue Mar 31 2020 11:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00005 * 2 1 4 4 C 1.50705 * 109.46872 * 66.05378 * 3 2 1 5 5 C 1.38636 * 119.74483 * 269.72155 * 4 3 2 6 6 C 1.37618 * 120.24360 * 179.72262 * 5 4 3 7 7 C 1.40714 * 119.74559 * 0.57257 * 6 5 4 8 8 C 1.41399 * 120.24466 * 179.68062 * 7 6 5 9 9 H 1.08003 * 120.00021 * 155.30880 * 8 7 6 10 10 C 1.39943 * 120.00029 * 335.31727 * 8 7 6 11 11 N 1.30833 * 119.99883 * 342.22694 * 10 8 7 12 12 Si 1.86800 * 120.00282 * 162.23294 * 10 8 7 13 13 H 1.48498 * 109.47215 * 94.66184 * 12 10 8 14 14 H 1.48501 * 109.47211 * 214.66378 * 12 10 8 15 15 H 1.48502 * 109.46717 * 334.65930 * 12 10 8 16 16 C 1.40714 * 119.51392 * 359.70566 * 7 6 5 17 17 C 1.37618 * 119.74257 * 359.97438 * 16 7 6 18 18 C 1.46900 * 110.99534 * 236.05170 * 2 1 3 19 19 C 1.50706 * 109.47075 * 293.95114 * 18 2 1 20 20 C 1.38231 * 120.00770 * 105.00308 * 19 18 2 21 21 C 1.38216 * 120.01725 * 180.02562 * 20 19 18 22 22 C 1.38266 * 120.02408 * 359.97438 * 21 20 19 23 23 C 1.38194 * 120.01379 * 359.97438 * 22 21 20 24 24 C 1.38333 * 120.00655 * 284.73144 * 19 18 2 25 25 Cl 1.73598 * 120.01378 * 359.96991 * 24 19 18 26 26 H 1.09001 * 109.47088 * 183.95492 * 1 2 3 27 27 H 1.09000 * 109.46739 * 303.94951 * 1 2 3 28 28 H 1.08995 * 109.47393 * 63.94572 * 1 2 3 29 29 H 1.08999 * 109.47345 * 186.04750 * 3 2 1 30 30 H 1.08995 * 109.47619 * 306.05368 * 3 2 1 31 31 H 1.08004 * 119.87714 * 359.97438 * 5 4 3 32 32 H 1.08010 * 120.12714 * 180.28068 * 6 5 4 33 33 H 0.96999 * 119.99437 * 180.02562 * 11 10 8 34 34 H 1.08001 * 120.12746 * 179.97438 * 16 7 6 35 35 H 1.07997 * 119.87596 * 179.97438 * 17 16 7 36 36 H 1.08992 * 109.47409 * 53.94961 * 18 2 1 37 37 H 1.09000 * 109.47199 * 173.95492 * 18 2 1 38 38 H 1.08006 * 119.99453 * 0.02562 * 20 19 18 39 39 H 1.08000 * 119.99031 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.98981 * 179.97438 * 22 21 20 41 41 H 1.07995 * 120.00321 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 1.2986 5 6 0.4492 2.7544 1.4009 6 6 0.1090 3.3705 2.5836 7 6 0.9778 3.2905 3.6876 8 6 0.6420 3.9252 4.9056 9 1 1.0573 3.5644 5.8350 10 6 -0.2287 5.0207 4.9070 11 7 -0.4582 5.6753 3.7976 12 14 -1.0632 5.5488 6.4926 13 1 -0.2663 6.6234 7.1372 14 1 -2.4254 6.0566 6.1898 15 1 -1.1612 4.3862 7.4113 16 6 2.1835 2.5746 3.5704 17 6 2.5001 1.9608 2.3800 18 6 1.9953 -0.7659 -1.1377 19 6 1.6368 -2.2204 -0.9730 20 6 0.6297 -2.7753 -1.7402 21 6 0.3003 -4.1091 -1.5889 22 6 0.9784 -4.8893 -0.6706 23 6 1.9861 -4.3360 0.0961 24 6 2.3193 -3.0019 -0.0581 25 17 3.5896 -2.3077 0.9001 26 1 -0.3633 -1.0252 0.0709 27 1 -0.3633 0.5739 0.8525 28 1 -0.3634 0.4513 -0.9232 29 1 3.0797 1.3444 -0.1083 30 1 1.5611 1.9274 -0.8308 31 1 -0.2136 2.8188 0.5506 32 1 -0.8191 3.9174 2.6626 33 1 -1.0615 6.4349 3.7987 34 1 2.8578 2.5071 4.4113 35 1 3.4252 1.4111 2.2876 36 1 1.5610 -0.3872 -2.0628 37 1 3.0796 -0.6611 -1.1758 38 1 0.0999 -2.1665 -2.4580 39 1 -0.4869 -4.5421 -2.1883 40 1 0.7203 -5.9313 -0.5526 41 1 2.5159 -4.9456 0.8131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398998383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:40 Heat of formation + Delta-G solvation = 24.522079 kcal Electronic energy + Delta-G solvation = -22864.199932 eV Core-core repulsion = 19540.531118 eV Total energy + Delta-G solvation = -3323.668814 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.55082 -39.62999 -37.79075 -37.19407 -35.52284 -33.12196 -31.65726 -31.48993 -31.16015 -28.71092 -27.98298 -25.91981 -23.66705 -23.49249 -22.74937 -21.84608 -21.36220 -19.19507 -17.89912 -17.17506 -16.78755 -16.59939 -16.54811 -15.94113 -15.76153 -15.60913 -14.94966 -14.79358 -14.58826 -14.26038 -14.09968 -13.79102 -13.69605 -13.38570 -13.05212 -12.90193 -12.71870 -12.64226 -12.47037 -12.37257 -12.32127 -12.25050 -12.11863 -11.98815 -11.52061 -11.33626 -11.21970 -10.97260 -9.84594 -9.55293 -9.32582 -9.19256 -9.03895 -8.62114 -6.30636 0.27125 0.35092 0.97947 1.19679 1.37387 1.38606 1.48392 1.54084 2.21397 2.63254 2.77299 3.31887 3.76590 3.81930 3.90001 4.16604 4.22602 4.31921 4.33547 4.48467 4.50685 4.55310 4.60543 4.64155 4.73487 4.78993 4.83609 4.87789 5.03890 5.06749 5.14909 5.18621 5.36562 5.40421 5.47967 5.51380 5.52690 5.74341 5.93452 5.99553 6.12896 6.15105 6.27423 6.35967 6.43529 6.73584 6.97399 7.07630 8.35019 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.022174 B = 0.002920 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.425175 B = 9587.225787 C = 9786.958975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.533 5.533 3 C 0.128 3.872 4 C -0.189 4.189 5 C -0.091 4.091 6 C -0.189 4.189 7 C 0.081 3.919 8 C -0.505 4.505 9 H 0.070 0.930 10 C 0.036 3.964 11 N -0.826 5.826 12 Si 0.980 3.020 13 H -0.263 1.263 14 H -0.264 1.264 15 H -0.261 1.261 16 C -0.246 4.246 17 C -0.070 4.070 18 C 0.093 3.907 19 C -0.083 4.083 20 C -0.108 4.108 21 C -0.118 4.118 22 C -0.109 4.109 23 C -0.127 4.127 24 C -0.032 4.032 25 Cl -0.075 7.075 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.031 0.969 29 H 0.075 0.925 30 H 0.035 0.965 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.287 0.713 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.142 0.858 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.687 -17.207 -12.275 21.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.256 5.256 3 C 0.001 3.999 4 C -0.190 4.190 5 C -0.110 4.110 6 C -0.208 4.208 7 C 0.079 3.921 8 C -0.534 4.534 9 H 0.089 0.911 10 C -0.178 4.178 11 N -0.453 5.453 12 Si 0.800 3.200 13 H -0.187 1.187 14 H -0.189 1.189 15 H -0.185 1.185 16 C -0.266 4.266 17 C -0.089 4.089 18 C -0.034 4.034 19 C -0.084 4.084 20 C -0.127 4.127 21 C -0.136 4.136 22 C -0.127 4.127 23 C -0.146 4.146 24 C -0.059 4.059 25 Cl -0.046 7.046 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.160 0.840 39 H 0.172 0.828 40 H 0.174 0.826 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.858 -17.151 -11.875 20.879 hybrid contribution -0.368 1.116 0.364 1.230 sum 0.490 -16.035 -11.511 19.745 Atomic orbital electron populations 1.22299 0.87559 1.01435 1.00268 1.61964 1.07994 1.13520 1.42168 1.20632 0.99188 0.86840 0.93195 1.19225 0.97352 1.06083 0.96386 1.20713 0.96366 0.97584 0.96361 1.21223 1.00364 1.04714 0.94535 1.17927 0.90461 0.90193 0.93567 1.19810 1.26136 1.13142 0.94353 0.91141 1.26719 0.94969 0.94854 1.01283 1.69885 1.29319 1.15670 1.30387 0.85239 0.78118 0.78965 0.77649 1.18725 1.18875 1.18471 1.21139 0.98145 1.09104 0.98170 1.20561 0.98272 0.97399 0.92661 1.21049 1.00737 0.89318 0.92294 1.19769 0.96799 0.95382 0.96439 1.21291 0.95947 0.96247 0.99200 1.21554 1.00085 0.93449 0.98464 1.21454 0.94710 1.01447 0.95131 1.21312 0.99236 0.92922 1.01087 1.21031 0.94459 0.94231 0.96221 1.98378 1.50255 1.85151 1.70817 0.91622 0.92888 0.95053 0.90701 0.94734 0.88000 0.88422 0.90239 0.89207 0.87585 0.92732 0.89943 0.84012 0.82807 0.82626 0.84288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 8.99 127.69 1.15 2.12 16 2 N -0.53 -16.10 4.66 -931.68 -4.34 -20.45 16 3 C 0.13 4.26 5.11 85.56 0.44 4.70 16 4 C -0.19 -8.03 4.91 -19.67 -0.10 -8.13 16 5 C -0.09 -4.23 7.87 22.22 0.17 -4.05 16 6 C -0.19 -10.16 8.70 22.73 0.20 -9.96 16 7 C 0.08 4.53 5.57 -21.29 -0.12 4.42 16 8 C -0.50 -28.38 9.05 23.46 0.21 -28.17 16 9 H 0.07 3.86 7.91 -2.91 -0.02 3.84 16 10 C 0.04 1.88 5.14 85.25 0.44 2.32 16 11 N -0.83 -44.30 10.97 21.83 0.24 -44.06 16 12 Si 0.98 39.38 29.59 68.60 2.03 41.41 16 13 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 14 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 15 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 16 C -0.25 -12.71 9.80 22.73 0.22 -12.49 16 17 C -0.07 -3.21 9.67 22.22 0.21 -2.99 16 18 C 0.09 2.26 4.43 85.56 0.38 2.63 16 19 C -0.08 -1.88 4.42 -19.84 -0.09 -1.97 16 20 C -0.11 -1.93 9.12 22.26 0.20 -1.73 16 21 C -0.12 -1.71 10.05 22.27 0.22 -1.49 16 22 C -0.11 -1.65 10.05 22.27 0.22 -1.42 16 23 C -0.13 -2.50 9.83 22.29 0.22 -2.28 16 24 C -0.03 -0.78 6.31 22.32 0.14 -0.64 16 25 Cl -0.07 -2.04 27.56 -2.72 -0.07 -2.11 16 26 H 0.07 1.82 6.88 -2.39 -0.02 1.80 16 27 H 0.05 1.90 5.90 -2.39 -0.01 1.88 16 28 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 2.35 7.87 -2.39 -0.02 2.33 16 30 H 0.03 1.08 8.06 -2.39 -0.02 1.07 16 31 H 0.10 4.22 7.99 -2.91 -0.02 4.20 16 32 H 0.10 5.51 6.18 -2.91 -0.02 5.49 16 33 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 34 H 0.09 4.48 8.06 -2.91 -0.02 4.45 16 35 H 0.11 4.35 8.06 -2.91 -0.02 4.32 16 36 H 0.05 1.15 7.93 -2.39 -0.02 1.13 16 37 H 0.08 2.02 7.36 -2.39 -0.02 2.00 16 38 H 0.14 2.02 8.00 -2.91 -0.02 2.00 16 39 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 41 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -62.32 353.93 3.01 -59.31 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 1.02 Total: 25.03 kcal Atomic # 6 Polarization: -63.27 SS G_CDS: 4.13 Total: -59.14 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -4.10 Total: -64.51 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -0.07 Total: -2.11 kcal Total: -62.32 3.01 -59.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398998383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.834 kcal (2) G-P(sol) polarization free energy of solvation -62.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds