Wall clock time and date at job start Tue Mar 31 2020 11:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47263 * 2 1 4 4 N 1.46903 * 109.46704 * 119.99779 * 2 1 3 5 5 C 1.46913 * 110.99741 * 274.99704 * 4 2 1 6 6 C 1.50697 * 109.46659 * 179.97438 * 5 4 2 7 7 C 1.38634 * 119.75288 * 269.72744 * 6 5 4 8 8 C 1.37617 * 120.24848 * 179.73086 * 7 6 5 9 9 C 1.40713 * 119.74392 * 0.56267 * 8 7 6 10 10 C 1.41402 * 120.24517 * 179.68572 * 9 8 7 11 11 H 1.07992 * 119.99985 * 155.31643 * 10 9 8 12 12 C 1.39941 * 119.99770 * 335.31766 * 10 9 8 13 13 N 1.30826 * 120.00261 * 342.22709 * 12 10 9 14 14 Si 1.86799 * 120.00149 * 162.23207 * 12 10 9 15 15 H 1.48500 * 109.47283 * 94.65865 * 14 12 10 16 16 H 1.48495 * 109.47322 * 214.66354 * 14 12 10 17 17 H 1.48504 * 109.47131 * 334.66557 * 14 12 10 18 18 C 1.40716 * 119.51401 * 359.71385 * 9 8 7 19 19 C 1.37620 * 119.74332 * 359.97438 * 18 9 8 20 20 C 1.50694 * 109.47558 * 239.99367 * 2 1 3 21 21 C 1.38240 * 120.00927 * 265.03072 * 20 2 1 22 22 C 1.38213 * 120.01342 * 179.97438 * 21 20 2 23 23 C 1.38262 * 120.03079 * 359.97438 * 22 21 20 24 24 C 1.38190 * 120.01106 * 359.97438 * 23 22 21 25 25 C 1.38329 * 120.00857 * 84.99951 * 20 2 1 26 26 Cl 1.73606 * 120.01202 * 0.02562 * 25 20 2 27 27 H 1.09005 * 109.46973 * 60.00794 * 1 2 3 28 28 H 1.08996 * 109.47263 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47753 * 300.00705 * 1 2 3 30 30 H 1.00897 * 111.00356 * 38.94603 * 4 2 1 31 31 H 1.08996 * 109.46875 * 300.00562 * 5 4 2 32 32 H 1.09004 * 109.46557 * 60.00594 * 5 4 2 33 33 H 1.08000 * 119.87454 * 359.97438 * 7 6 5 34 34 H 1.08006 * 120.12837 * 180.28173 * 8 7 6 35 35 H 0.96998 * 120.00550 * 179.97438 * 13 12 10 36 36 H 1.08002 * 120.12794 * 179.97438 * 18 9 8 37 37 H 1.07999 * 119.87990 * 179.97438 * 19 18 9 38 38 H 1.08002 * 119.99141 * 359.97438 * 21 20 2 39 39 H 1.08001 * 119.98703 * 180.02562 * 22 21 20 40 40 H 1.07998 * 119.99800 * 180.27245 * 23 22 21 41 41 H 1.08001 * 120.00903 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0824 0.2228 2.3470 6 6 2.5871 -0.5216 3.5561 7 6 1.6865 -1.1469 4.4046 8 6 2.1366 -1.8341 5.5086 9 6 3.5159 -1.8907 5.7813 10 6 3.9895 -2.5883 6.9164 11 1 4.9973 -2.9762 6.9301 12 6 3.1523 -2.7760 8.0219 13 7 2.0837 -2.0353 8.1665 14 14 3.5606 -4.0841 9.2913 15 1 4.3205 -3.4691 10.4092 16 1 2.3032 -4.6761 9.8142 17 1 4.3831 -5.1472 8.6598 18 6 4.4205 -1.2475 4.9163 19 6 3.9483 -0.5714 3.8145 20 6 2.0324 -0.7105 -1.2303 21 6 2.3607 -2.0519 -1.1684 22 6 2.8210 -2.7038 -2.2969 23 6 2.9530 -2.0150 -3.4884 24 6 2.6241 -0.6743 -3.5519 25 6 2.1646 -0.0207 -2.4220 26 17 1.7524 1.6639 -2.5006 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8898 30 1 1.4494 -1.4978 1.4102 31 1 2.7587 1.0463 2.1182 32 1 1.0869 0.6165 2.5525 33 1 0.6279 -1.0977 4.1962 34 1 1.4335 -2.3243 6.1658 35 1 1.5032 -2.1656 8.9326 36 1 5.4812 -1.2842 5.1163 37 1 4.6405 -0.0766 3.1494 38 1 2.2574 -2.5906 -0.2381 39 1 3.0769 -3.7519 -2.2482 40 1 3.3085 -2.5259 -4.3710 41 1 2.7268 -0.1364 -4.4827 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399029105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:30 Heat of formation + Delta-G solvation = 26.401519 kcal Electronic energy + Delta-G solvation = -22476.323933 eV Core-core repulsion = 19152.736617 eV Total energy + Delta-G solvation = -3323.587316 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.71578 -37.82286 -36.53473 -36.34785 -33.84921 -31.96951 -30.81496 -29.88689 -29.26087 -28.59077 -26.10039 -23.90116 -23.23131 -22.31727 -21.00320 -20.53259 -19.86079 -17.30080 -17.27826 -15.91753 -15.74228 -15.32103 -14.90763 -14.41117 -14.09791 -13.97193 -13.84329 -13.78802 -13.42000 -13.20601 -12.78820 -12.47304 -12.31104 -11.93509 -11.79502 -11.68472 -11.61286 -11.52700 -11.41320 -11.12855 -11.02392 -10.96139 -10.65492 -10.53205 -10.33653 -9.56576 -9.39149 -9.12344 -8.94433 -8.74968 -8.11147 -7.44145 -7.28953 -6.76610 -4.34680 1.07508 1.21967 2.04816 2.73795 3.06279 3.09129 3.10817 3.18305 3.56004 3.92803 4.32728 4.61439 4.70469 4.84085 4.92297 5.13303 5.21199 5.24122 5.36713 5.56437 5.66785 5.69206 5.74923 5.85932 5.92007 5.95279 6.07394 6.16479 6.29282 6.34679 6.39711 6.41795 6.43620 6.73860 6.95389 7.07914 7.27933 7.35371 7.39072 7.62087 7.68710 7.90013 8.06321 8.14986 8.31448 8.64643 8.90264 8.98582 10.18040 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.024733 B = 0.002561 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.831290 B =10930.875259 C =11406.756065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.115 3.885 3 H 0.091 0.909 4 N -0.676 5.676 5 C 0.126 3.874 6 C -0.214 4.214 7 C -0.094 4.094 8 C -0.166 4.166 9 C 0.113 3.887 10 C -0.463 4.463 11 H 0.077 0.923 12 C 0.076 3.924 13 N -0.794 5.794 14 Si 0.906 3.094 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.260 1.260 18 C -0.228 4.228 19 C -0.068 4.068 20 C -0.054 4.054 21 C -0.082 4.082 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.115 4.115 25 C -0.036 4.036 26 Cl -0.076 7.076 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.341 0.659 31 H 0.062 0.938 32 H 0.022 0.978 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.280 0.720 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.139 0.861 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 1.483 -18.546 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.004 3.996 3 H 0.109 0.891 4 N -0.307 5.307 5 C -0.002 4.002 6 C -0.216 4.216 7 C -0.113 4.113 8 C -0.186 4.186 9 C 0.110 3.890 10 C -0.492 4.492 11 H 0.095 0.905 12 C -0.141 4.141 13 N -0.419 5.419 14 Si 0.730 3.270 15 H -0.196 1.196 16 H -0.201 1.201 17 H -0.184 1.184 18 C -0.248 4.248 19 C -0.086 4.086 20 C -0.055 4.055 21 C -0.101 4.101 22 C -0.135 4.135 23 C -0.136 4.136 24 C -0.134 4.134 25 C -0.063 4.063 26 Cl -0.047 7.047 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.160 0.840 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.100 0.900 34 H 0.134 0.866 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.157 0.843 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.661 1.781 -18.531 18.806 hybrid contribution -0.814 -0.263 0.850 1.206 sum -3.475 1.517 -17.681 18.083 Atomic orbital electron populations 1.22444 0.96149 1.02368 1.02495 1.20484 0.92755 0.97760 0.88586 0.89130 1.60769 1.56586 1.09933 1.03378 1.20577 0.97843 0.93643 0.88105 1.18865 0.93574 1.10507 0.98605 1.20512 0.96349 0.98774 0.95709 1.21263 0.96343 1.03578 0.97373 1.17623 0.91632 0.88472 0.91234 1.19598 0.99718 1.31288 0.98644 0.90502 1.25906 0.94108 0.95180 0.98939 1.69830 1.12151 1.32277 1.27656 0.86342 0.78976 0.81456 0.80210 1.19598 1.20068 1.18420 1.20979 0.97923 1.06162 0.99717 1.20338 0.93891 0.98340 0.96079 1.19776 0.98373 0.94199 0.93191 1.21072 0.96891 0.93306 0.98804 1.21301 0.99095 1.00360 0.92789 1.21060 1.00490 0.93680 0.98348 1.20951 1.00235 0.95002 0.97205 1.20789 1.04708 0.85386 0.95438 1.98353 1.92213 1.15654 1.98449 0.92044 0.92285 0.91923 0.84013 0.91998 0.96001 0.89951 0.86629 0.90942 0.89150 0.89497 0.84346 0.85535 0.85509 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 9.14 37.16 0.34 -1.67 16 2 C 0.11 1.48 2.31 -68.87 -0.16 1.32 16 3 H 0.09 1.23 6.78 -51.93 -0.35 0.88 16 4 N -0.68 -10.15 5.24 -109.22 -0.57 -10.72 16 5 C 0.13 2.15 5.60 -4.97 -0.03 2.12 16 6 C -0.21 -4.51 5.41 -104.33 -0.56 -5.08 16 7 C -0.09 -2.13 9.67 -39.66 -0.38 -2.52 16 8 C -0.17 -4.25 8.70 -38.87 -0.34 -4.59 16 9 C 0.11 3.00 5.57 -106.82 -0.60 2.40 16 10 C -0.46 -12.27 9.05 -37.74 -0.34 -12.61 16 11 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 12 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 13 N -0.79 -20.44 10.97 55.55 0.61 -19.83 16 14 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 15 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 16 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 17 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 18 C -0.23 -5.61 9.80 -38.87 -0.38 -6.00 16 19 C -0.07 -1.51 9.67 -39.66 -0.38 -1.90 16 20 C -0.05 -0.67 5.06 -104.59 -0.53 -1.20 16 21 C -0.08 -0.99 9.32 -39.59 -0.37 -1.35 16 22 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 23 C -0.12 -1.10 10.05 -39.59 -0.40 -1.49 16 24 C -0.12 -1.16 9.83 -39.55 -0.39 -1.55 16 25 C -0.04 -0.42 6.31 -39.50 -0.25 -0.67 16 26 Cl -0.08 -0.84 27.17 -51.86 -1.41 -2.25 16 27 H 0.06 0.66 7.91 -51.93 -0.41 0.25 16 28 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 29 H 0.06 0.73 7.45 -51.93 -0.39 0.34 16 30 H 0.34 5.05 7.89 -39.29 -0.31 4.74 16 31 H 0.06 1.05 7.99 -51.93 -0.42 0.63 16 32 H 0.02 0.36 7.37 -51.93 -0.38 -0.02 16 33 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.12 3.07 6.18 -52.48 -0.32 2.74 16 35 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 36 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 37 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 38 H 0.14 1.68 6.89 -52.49 -0.36 1.32 16 39 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 356.11 15.07 5.37 5.37 Total: -1.00 -26.98 356.11 -11.74 -38.72 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -5.45 Total: 9.74 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: -5.26 Total: -34.57 kcal Atomic # 7 Polarization: -30.59 SS G_CDS: 0.04 Total: -30.56 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.41 Total: -2.25 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -26.98 -11.74 -38.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399029105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.123 kcal (2) G-P(sol) polarization free energy of solvation -26.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds