Wall clock time and date at job start Tue Mar 31 2020 11:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47263 * 2 1 4 4 N 1.46903 * 109.46704 * 119.99779 * 2 1 3 5 5 C 1.46913 * 110.99741 * 274.99704 * 4 2 1 6 6 C 1.50697 * 109.46659 * 179.97438 * 5 4 2 7 7 C 1.38634 * 119.75288 * 269.72744 * 6 5 4 8 8 C 1.37617 * 120.24848 * 179.73086 * 7 6 5 9 9 C 1.40713 * 119.74392 * 0.56267 * 8 7 6 10 10 C 1.41402 * 120.24517 * 179.68572 * 9 8 7 11 11 H 1.07992 * 119.99985 * 155.31643 * 10 9 8 12 12 C 1.39941 * 119.99770 * 335.31766 * 10 9 8 13 13 N 1.30826 * 120.00261 * 342.22709 * 12 10 9 14 14 Si 1.86799 * 120.00149 * 162.23207 * 12 10 9 15 15 H 1.48500 * 109.47283 * 94.65865 * 14 12 10 16 16 H 1.48495 * 109.47322 * 214.66354 * 14 12 10 17 17 H 1.48504 * 109.47131 * 334.66557 * 14 12 10 18 18 C 1.40716 * 119.51401 * 359.71385 * 9 8 7 19 19 C 1.37620 * 119.74332 * 359.97438 * 18 9 8 20 20 C 1.50694 * 109.47558 * 239.99367 * 2 1 3 21 21 C 1.38240 * 120.00927 * 265.03072 * 20 2 1 22 22 C 1.38213 * 120.01342 * 179.97438 * 21 20 2 23 23 C 1.38262 * 120.03079 * 359.97438 * 22 21 20 24 24 C 1.38190 * 120.01106 * 359.97438 * 23 22 21 25 25 C 1.38329 * 120.00857 * 84.99951 * 20 2 1 26 26 Cl 1.73606 * 120.01202 * 0.02562 * 25 20 2 27 27 H 1.09005 * 109.46973 * 60.00794 * 1 2 3 28 28 H 1.08996 * 109.47263 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47753 * 300.00705 * 1 2 3 30 30 H 1.00897 * 111.00356 * 38.94603 * 4 2 1 31 31 H 1.08996 * 109.46875 * 300.00562 * 5 4 2 32 32 H 1.09004 * 109.46557 * 60.00594 * 5 4 2 33 33 H 1.08000 * 119.87454 * 359.97438 * 7 6 5 34 34 H 1.08006 * 120.12837 * 180.28173 * 8 7 6 35 35 H 0.96998 * 120.00550 * 179.97438 * 13 12 10 36 36 H 1.08002 * 120.12794 * 179.97438 * 18 9 8 37 37 H 1.07999 * 119.87990 * 179.97438 * 19 18 9 38 38 H 1.08002 * 119.99141 * 359.97438 * 21 20 2 39 39 H 1.08001 * 119.98703 * 180.02562 * 22 21 20 40 40 H 1.07998 * 119.99800 * 180.27245 * 23 22 21 41 41 H 1.08001 * 120.00903 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0824 0.2228 2.3470 6 6 2.5871 -0.5216 3.5561 7 6 1.6865 -1.1469 4.4046 8 6 2.1366 -1.8341 5.5086 9 6 3.5159 -1.8907 5.7813 10 6 3.9895 -2.5883 6.9164 11 1 4.9973 -2.9762 6.9301 12 6 3.1523 -2.7760 8.0219 13 7 2.0837 -2.0353 8.1665 14 14 3.5606 -4.0841 9.2913 15 1 4.3205 -3.4691 10.4092 16 1 2.3032 -4.6761 9.8142 17 1 4.3831 -5.1472 8.6598 18 6 4.4205 -1.2475 4.9163 19 6 3.9483 -0.5714 3.8145 20 6 2.0324 -0.7105 -1.2303 21 6 2.3607 -2.0519 -1.1684 22 6 2.8210 -2.7038 -2.2969 23 6 2.9530 -2.0150 -3.4884 24 6 2.6241 -0.6743 -3.5519 25 6 2.1646 -0.0207 -2.4220 26 17 1.7524 1.6639 -2.5006 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8898 30 1 1.4494 -1.4978 1.4102 31 1 2.7587 1.0463 2.1182 32 1 1.0869 0.6165 2.5525 33 1 0.6279 -1.0977 4.1962 34 1 1.4335 -2.3243 6.1658 35 1 1.5032 -2.1656 8.9326 36 1 5.4812 -1.2842 5.1163 37 1 4.6405 -0.0766 3.1494 38 1 2.2574 -2.5906 -0.2381 39 1 3.0769 -3.7519 -2.2482 40 1 3.3085 -2.5259 -4.3710 41 1 2.7268 -0.1364 -4.4827 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399029105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:30 Heat of formation + Delta-G solvation = 15.110774 kcal Electronic energy + Delta-G solvation = -22476.813536 eV Core-core repulsion = 19152.736617 eV Total energy + Delta-G solvation = -3324.076919 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.59684 -39.52798 -37.60369 -37.34882 -35.61315 -33.33669 -31.62041 -31.33322 -31.06089 -29.76058 -27.71821 -25.15836 -24.38472 -23.29538 -22.85679 -21.62275 -21.47346 -19.19645 -18.19741 -17.22816 -16.81348 -16.67945 -16.03845 -15.89357 -15.58095 -15.22794 -15.05846 -14.72166 -14.61160 -14.51007 -14.16501 -13.81824 -13.77655 -13.45467 -13.16402 -12.96170 -12.80079 -12.64527 -12.58377 -12.43133 -12.39383 -12.30852 -12.05406 -11.97669 -11.52565 -11.31216 -11.24412 -10.98376 -9.77064 -9.60964 -9.38209 -9.26040 -9.13825 -8.62694 -6.31462 0.25748 0.40721 0.96352 1.18572 1.20934 1.38232 1.48706 1.54500 2.21512 2.69277 2.75523 3.30747 3.74557 3.83336 3.96715 4.14116 4.20596 4.26408 4.33796 4.39144 4.46845 4.55322 4.62953 4.66205 4.70690 4.82627 4.87348 4.90715 5.06922 5.08123 5.17967 5.18995 5.35603 5.40294 5.49821 5.50299 5.57367 5.73814 5.94624 5.98015 6.12717 6.18899 6.26962 6.42525 6.50966 6.73012 6.96752 7.06734 8.34448 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.024733 B = 0.002561 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.831290 B =10930.875259 C =11406.756065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.120 3.880 3 H 0.084 0.916 4 N -0.679 5.679 5 C 0.134 3.866 6 C -0.197 4.197 7 C -0.095 4.095 8 C -0.189 4.189 9 C 0.080 3.920 10 C -0.503 4.503 11 H 0.072 0.928 12 C 0.036 3.964 13 N -0.826 5.826 14 Si 0.980 3.020 15 H -0.263 1.263 16 H -0.265 1.265 17 H -0.260 1.260 18 C -0.245 4.245 19 C -0.072 4.072 20 C -0.071 4.071 21 C -0.099 4.099 22 C -0.120 4.120 23 C -0.112 4.112 24 C -0.118 4.118 25 C -0.049 4.049 26 Cl -0.076 7.076 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.342 0.658 31 H 0.067 0.933 32 H 0.033 0.967 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.287 0.713 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.130 0.870 39 H 0.146 0.854 40 H 0.157 0.843 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.256 1.276 -20.417 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.010 3.990 3 H 0.102 0.898 4 N -0.310 5.310 5 C 0.006 3.994 6 C -0.199 4.199 7 C -0.114 4.114 8 C -0.208 4.208 9 C 0.078 3.922 10 C -0.533 4.533 11 H 0.090 0.910 12 C -0.179 4.179 13 N -0.453 5.453 14 Si 0.801 3.199 15 H -0.188 1.188 16 H -0.189 1.189 17 H -0.183 1.183 18 C -0.264 4.264 19 C -0.091 4.091 20 C -0.072 4.072 21 C -0.118 4.118 22 C -0.138 4.138 23 C -0.130 4.130 24 C -0.136 4.136 25 C -0.076 4.076 26 Cl -0.047 7.047 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.161 0.839 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.148 0.852 39 H 0.163 0.837 40 H 0.175 0.825 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.831 1.587 -20.424 20.680 hybrid contribution -0.770 -0.121 1.228 1.455 sum -3.602 1.466 -19.195 19.585 Atomic orbital electron populations 1.22376 0.95102 1.02645 1.02729 1.20426 0.93561 0.97164 0.87810 0.89761 1.60645 1.57349 1.09739 1.03250 1.20452 0.98360 0.93450 0.87166 1.19273 0.92932 1.08495 0.99170 1.20760 0.97874 0.97935 0.94845 1.21237 0.95899 1.05124 0.98563 1.17956 0.92511 0.89596 0.92154 1.19823 1.00255 1.33275 0.99923 0.90979 1.26730 0.93726 0.96831 1.00599 1.69877 1.13124 1.33523 1.28729 0.85231 0.79029 0.78317 0.77361 1.18789 1.18948 1.18343 1.21160 0.97975 1.06772 1.00514 1.20622 0.95012 0.97825 0.95632 1.19750 0.99619 0.94563 0.93262 1.21123 0.97997 0.93356 0.99314 1.21578 0.98337 1.01374 0.92541 1.21430 0.99182 0.93410 0.99019 1.21268 0.99381 0.95512 0.97448 1.20931 1.05337 0.85525 0.95777 1.98349 1.92259 1.15657 1.98444 0.91347 0.91989 0.92081 0.83882 0.91426 0.94888 0.87701 0.88346 0.90210 0.88997 0.87316 0.85215 0.83672 0.82517 0.83439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.62 9.14 71.98 0.66 -2.96 16 2 C 0.12 2.93 2.31 44.17 0.10 3.03 16 3 H 0.08 2.16 6.78 -2.39 -0.02 2.14 16 4 N -0.68 -19.43 5.24 -499.45 -2.62 -22.05 16 5 C 0.13 4.32 5.60 85.55 0.48 4.80 16 6 C -0.20 -8.14 5.41 -19.67 -0.11 -8.24 16 7 C -0.10 -4.29 9.67 22.22 0.21 -4.08 16 8 C -0.19 -9.94 8.70 22.73 0.20 -9.74 16 9 C 0.08 4.40 5.57 -21.29 -0.12 4.28 16 10 C -0.50 -27.73 9.05 23.46 0.21 -27.52 16 11 H 0.07 3.86 7.91 -2.91 -0.02 3.84 16 12 C 0.04 1.83 5.14 85.26 0.44 2.27 16 13 N -0.83 -43.72 10.97 21.83 0.24 -43.48 16 14 Si 0.98 38.67 29.59 68.60 2.03 40.70 16 15 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 16 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 17 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 18 C -0.24 -12.31 9.80 22.73 0.22 -12.08 16 19 C -0.07 -3.20 9.67 22.22 0.21 -2.99 16 20 C -0.07 -1.66 5.06 -19.84 -0.10 -1.76 16 21 C -0.10 -2.25 9.32 22.26 0.21 -2.04 16 22 C -0.12 -2.18 10.05 22.27 0.22 -1.95 16 23 C -0.11 -1.75 10.05 22.26 0.22 -1.53 16 24 C -0.12 -2.07 9.83 22.29 0.22 -1.85 16 25 C -0.05 -1.05 6.31 22.32 0.14 -0.91 16 26 Cl -0.08 -1.56 27.17 -2.72 -0.07 -1.64 16 27 H 0.07 1.36 7.91 -2.38 -0.02 1.34 16 28 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 29 H 0.06 1.31 7.45 -2.39 -0.02 1.29 16 30 H 0.34 9.72 7.89 -89.70 -0.71 9.02 16 31 H 0.07 2.14 7.99 -2.39 -0.02 2.12 16 32 H 0.03 1.01 7.37 -2.38 -0.02 0.99 16 33 H 0.10 4.17 8.06 -2.91 -0.02 4.15 16 34 H 0.10 5.44 6.18 -2.91 -0.02 5.43 16 35 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 36 H 0.09 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 38 H 0.13 3.08 6.89 -2.91 -0.02 3.06 16 39 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -59.33 356.11 3.34 -55.99 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: 0.33 Total: 33.75 kcal Atomic # 6 Polarization: -66.70 SS G_CDS: 3.43 Total: -63.27 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: -2.38 Total: -65.53 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.07 Total: -1.64 kcal Total: -59.33 3.34 -55.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399029105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.098 kcal (2) G-P(sol) polarization free energy of solvation -59.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds