Wall clock time and date at job start Tue Mar 31 2020 11:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 110.99876 * 2 1 4 4 C 1.50694 * 109.47559 * 66.04033 * 3 2 1 5 5 C 1.38632 * 119.75235 * 269.73183 * 4 3 2 6 6 C 1.37625 * 120.24810 * 179.71694 * 5 4 3 7 7 C 1.40716 * 119.74376 * 0.57372 * 6 5 4 8 8 C 1.41397 * 120.23926 * 179.68014 * 7 6 5 9 9 H 1.08006 * 119.99132 * 204.40187 * 8 7 6 10 10 C 1.39939 * 120.00246 * 24.40560 * 8 7 6 11 11 N 1.30819 * 120.00223 * 17.85250 * 10 8 7 12 12 Si 1.86801 * 119.99818 * 197.84322 * 10 8 7 13 13 H 1.48502 * 109.46948 * 90.00635 * 12 10 8 14 14 H 1.48500 * 109.47391 * 210.00103 * 12 10 8 15 15 H 1.48498 * 109.47485 * 330.00515 * 12 10 8 16 16 C 1.40712 * 119.51089 * 359.70215 * 7 6 5 17 17 C 1.37619 * 119.74705 * 359.97438 * 16 7 6 18 18 C 1.46898 * 111.00495 * 236.04208 * 2 1 3 19 19 C 1.50695 * 109.46977 * 293.95270 * 18 2 1 20 20 C 1.38260 * 119.99579 * 269.72132 * 19 18 2 21 21 C 1.38223 * 120.02541 * 179.77017 * 20 19 18 22 22 C 1.38236 * 120.01493 * 0.50542 * 21 20 19 23 23 C 1.38324 * 119.98435 * 359.74670 * 22 21 20 24 24 Cl 1.73606 * 120.01282 * 180.02562 * 23 22 21 25 25 C 1.38196 * 119.99383 * 89.99702 * 19 18 2 26 26 H 1.08999 * 109.47005 * 183.95835 * 1 2 3 27 27 H 1.09003 * 109.47382 * 303.95819 * 1 2 3 28 28 H 1.09003 * 109.47409 * 63.95820 * 1 2 3 29 29 H 1.08997 * 109.46978 * 186.04533 * 3 2 1 30 30 H 1.09005 * 109.46811 * 306.04428 * 3 2 1 31 31 H 1.08004 * 119.87556 * 359.97438 * 5 4 3 32 32 H 1.08000 * 120.12596 * 180.27557 * 6 5 4 33 33 H 0.96999 * 120.00635 * 179.97438 * 11 10 8 34 34 H 1.08003 * 120.12870 * 179.97438 * 16 7 6 35 35 H 1.07998 * 119.87692 * 180.02562 * 17 16 7 36 36 H 1.08995 * 109.47116 * 173.95327 * 18 2 1 37 37 H 1.09002 * 109.46978 * 53.95050 * 18 2 1 38 38 H 1.08002 * 119.98855 * 0.02562 * 20 19 18 39 39 H 1.08008 * 119.98996 * 180.26008 * 21 20 19 40 40 H 1.07996 * 120.00275 * 179.76989 * 22 21 20 41 41 H 1.08004 * 120.00680 * 359.95798 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0473 1.2983 5 6 0.4489 2.7546 1.4005 6 6 0.1085 3.3709 2.5831 7 6 0.9773 3.2910 3.6872 8 6 0.6412 3.9259 4.9051 9 1 1.4191 4.2107 5.5981 10 6 -0.6992 4.1851 5.2125 11 7 -1.6506 3.5525 4.5752 12 14 -1.1299 5.4341 6.5330 13 1 -1.2700 6.7778 5.9165 14 1 -2.4108 5.0500 7.1789 15 1 -0.0515 5.4676 7.5534 16 6 2.1830 2.5752 3.5701 17 6 2.4998 1.9612 2.3799 18 6 1.9955 -0.7660 -1.1375 19 6 1.6371 -2.2204 -0.9726 20 6 2.4969 -3.0729 -0.3051 21 6 2.1666 -4.4060 -0.1494 22 6 0.9810 -4.8900 -0.6701 23 6 0.1228 -4.0387 -1.3426 24 17 -1.3666 -4.6456 -1.9963 25 6 0.4516 -2.7031 -1.4936 26 1 -0.3633 -1.0252 0.0709 27 1 -0.3634 0.5740 0.8524 28 1 -0.3634 0.4512 -0.9233 29 1 3.0796 1.3444 -0.1082 30 1 1.5610 1.9273 -0.8310 31 1 -0.2139 2.8188 0.5502 32 1 -0.8195 3.9177 2.6619 33 1 -2.5797 3.7318 4.7885 34 1 2.8574 2.5078 4.4111 35 1 3.4245 1.4109 2.2878 36 1 3.0797 -0.6611 -1.1754 37 1 1.5611 -0.3874 -2.0627 38 1 3.4252 -2.6961 0.0984 39 1 2.8368 -5.0705 0.3758 40 1 0.7248 -5.9324 -0.5516 41 1 -0.2183 -2.0380 -2.0183 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399139366.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:42 Heat of formation + Delta-G solvation = 22.783907 kcal Electronic energy + Delta-G solvation = -22549.681988 eV Core-core repulsion = 19225.937801 eV Total energy + Delta-G solvation = -3323.744187 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.59951 -39.63753 -37.95585 -37.27691 -35.51524 -33.10308 -31.68671 -31.56811 -31.15123 -28.71822 -28.07086 -25.93873 -23.65532 -23.54085 -22.74519 -21.88875 -21.37550 -19.18975 -17.89792 -17.18459 -16.76573 -16.62537 -16.53714 -16.04236 -15.83960 -15.64130 -15.03803 -14.85882 -14.55895 -14.31174 -14.14191 -13.79827 -13.74447 -13.39583 -13.03011 -12.87548 -12.75385 -12.68662 -12.60420 -12.44184 -12.34127 -12.20173 -12.13549 -11.96659 -11.73002 -11.33618 -11.20674 -10.99336 -9.90030 -9.63483 -9.33325 -9.20555 -9.07087 -8.61336 -6.30534 0.22291 0.30397 0.97859 1.15803 1.20376 1.37612 1.50658 1.52049 2.21186 2.58334 2.76082 3.34416 3.74539 3.82426 3.89580 4.10071 4.22075 4.31794 4.33856 4.38149 4.49633 4.52771 4.56858 4.66004 4.72378 4.76619 4.84452 4.87609 4.99640 5.08412 5.13216 5.18668 5.25776 5.40180 5.42154 5.51770 5.60308 5.74779 5.87727 5.99530 6.10462 6.13823 6.26250 6.34536 6.43946 6.74473 6.97723 7.08310 8.35051 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.018727 B = 0.002653 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.847478 B =10553.004610 C =11165.242187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.539 5.539 3 C 0.125 3.875 4 C -0.193 4.193 5 C -0.094 4.094 6 C -0.191 4.191 7 C 0.079 3.921 8 C -0.503 4.503 9 H 0.072 0.928 10 C 0.035 3.965 11 N -0.826 5.826 12 Si 0.981 3.019 13 H -0.262 1.262 14 H -0.268 1.268 15 H -0.259 1.259 16 C -0.246 4.246 17 C -0.071 4.071 18 C 0.093 3.907 19 C -0.070 4.070 20 C -0.101 4.101 21 C -0.108 4.108 22 C -0.119 4.119 23 C -0.049 4.049 24 Cl -0.078 7.078 25 C -0.114 4.114 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.029 0.971 29 H 0.088 0.912 30 H 0.034 0.966 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.286 0.714 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.048 0.952 38 H 0.142 0.858 39 H 0.157 0.843 40 H 0.147 0.853 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.773 -13.421 -12.451 18.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.263 5.263 3 C -0.001 4.001 4 C -0.194 4.194 5 C -0.113 4.113 6 C -0.211 4.211 7 C 0.076 3.924 8 C -0.533 4.533 9 H 0.091 0.909 10 C -0.180 4.180 11 N -0.453 5.453 12 Si 0.801 3.199 13 H -0.187 1.187 14 H -0.193 1.193 15 H -0.183 1.183 16 C -0.265 4.265 17 C -0.089 4.089 18 C -0.034 4.034 19 C -0.071 4.071 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.137 4.137 23 C -0.075 4.075 24 Cl -0.049 7.049 25 C -0.134 4.134 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.106 0.894 30 H 0.052 0.948 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.134 0.866 36 H 0.119 0.881 37 H 0.067 0.933 38 H 0.159 0.841 39 H 0.175 0.825 40 H 0.165 0.835 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.549 -13.733 -12.108 18.865 hybrid contribution -1.153 0.950 0.035 1.494 sum 3.396 -12.783 -12.073 17.908 Atomic orbital electron populations 1.22338 0.88046 1.01442 1.00086 1.62020 1.07794 1.14043 1.42464 1.20718 0.99807 0.86503 0.93108 1.19273 0.96877 1.06539 0.96741 1.20730 0.96132 0.98166 0.96260 1.21232 1.01287 1.05468 0.93096 1.17955 0.91745 0.89568 0.93091 1.19832 0.93284 1.36297 1.03890 0.90935 1.26729 0.95648 0.96324 0.99260 1.69886 1.01795 1.34586 1.38991 0.85230 0.78427 0.78335 0.77865 1.18709 1.19305 1.18260 1.21172 1.00466 1.06542 0.98328 1.20644 0.98466 0.97478 0.92357 1.21128 1.01502 0.88941 0.91828 1.19814 0.93990 0.95719 0.97528 1.21410 1.00286 0.93456 0.96820 1.21441 0.96391 0.95890 0.98829 1.21307 0.94103 1.00526 0.97808 1.21038 0.89720 0.94519 1.02235 1.98362 1.33604 1.87948 1.85033 1.21038 0.97328 0.93774 1.01234 0.91677 0.93129 0.95252 0.89383 0.94763 0.88350 0.88579 0.90316 0.88885 0.86584 0.88121 0.93341 0.84065 0.82538 0.83529 0.85368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 8.79 127.69 1.12 2.03 16 2 N -0.54 -15.77 4.74 -931.67 -4.42 -20.19 16 3 C 0.12 3.87 5.11 85.55 0.44 4.31 16 4 C -0.19 -7.87 4.91 -19.68 -0.10 -7.97 16 5 C -0.09 -4.29 7.87 22.22 0.17 -4.12 16 6 C -0.19 -10.20 8.70 22.73 0.20 -10.00 16 7 C 0.08 4.34 5.57 -21.29 -0.12 4.22 16 8 C -0.50 -27.87 9.05 23.46 0.21 -27.66 16 9 H 0.07 3.89 7.91 -2.91 -0.02 3.87 16 10 C 0.03 1.80 5.14 85.26 0.44 2.24 16 11 N -0.83 -44.31 10.95 21.82 0.24 -44.07 16 12 Si 0.98 39.11 29.60 68.60 2.03 41.14 16 13 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 14 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 15 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 16 C -0.25 -12.23 9.80 22.73 0.22 -12.00 16 17 C -0.07 -3.05 9.67 22.22 0.21 -2.84 16 18 C 0.09 2.04 5.12 85.56 0.44 2.48 16 19 C -0.07 -1.52 4.88 -19.87 -0.10 -1.62 16 20 C -0.10 -1.97 9.70 22.27 0.22 -1.75 16 21 C -0.11 -1.82 10.05 22.27 0.22 -1.60 16 22 C -0.12 -2.17 9.83 22.29 0.22 -1.95 16 23 C -0.05 -1.04 6.32 22.32 0.14 -0.89 16 24 Cl -0.08 -1.61 28.96 -2.72 -0.08 -1.68 16 25 C -0.11 -2.54 7.75 22.29 0.17 -2.36 16 26 H 0.06 1.95 6.17 -2.39 -0.01 1.93 16 27 H 0.05 1.93 5.90 -2.39 -0.01 1.92 16 28 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 2.36 7.87 -2.39 -0.02 2.34 16 30 H 0.03 1.01 8.06 -2.38 -0.02 0.99 16 31 H 0.10 4.07 7.99 -2.91 -0.02 4.05 16 32 H 0.10 5.41 6.16 -2.91 -0.02 5.39 16 33 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 34 H 0.09 4.43 8.06 -2.91 -0.02 4.40 16 35 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 36 H 0.10 1.86 7.87 -2.39 -0.02 1.85 16 37 H 0.05 0.99 8.06 -2.39 -0.02 0.97 16 38 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 39 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 40 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 41 H 0.13 2.75 8.03 -2.91 -0.02 2.73 16 Total: -1.00 -60.65 354.58 2.91 -57.74 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 1.02 Total: 26.54 kcal Atomic # 6 Polarization: -63.61 SS G_CDS: 4.12 Total: -59.49 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -4.18 Total: -64.26 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.68 kcal Total: -60.65 2.91 -57.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399139366.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.527 kcal (2) G-P(sol) polarization free energy of solvation -60.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds