Wall clock time and date at job start Tue Mar 31 2020 10:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47248 * 2 1 4 4 H 1.08999 * 109.46986 * 305.71309 * 3 2 1 5 5 C 1.52997 * 109.46850 * 65.71215 * 3 2 1 6 6 C 1.53000 * 109.47128 * 186.51502 * 5 3 2 7 7 F 1.39902 * 109.46815 * 54.61563 * 6 5 3 8 8 F 1.39894 * 109.47130 * 294.61309 * 6 5 3 9 9 F 1.39902 * 109.46932 * 174.61321 * 6 5 3 10 10 C 1.50694 * 109.46977 * 185.71086 * 3 2 1 11 11 O 1.21294 * 120.00099 * 278.60236 * 10 3 2 12 12 N 1.34776 * 120.00369 * 98.60531 * 10 3 2 13 13 C 1.39937 * 120.00420 * 184.54845 * 12 10 3 14 14 C 1.39290 * 119.94725 * 325.04967 * 13 12 10 15 15 C 1.38485 * 120.42827 * 179.76041 * 14 13 12 16 16 C 1.37690 * 120.31989 * 0.51636 * 15 14 13 17 17 C 1.40736 * 119.88655 * 359.74430 * 16 15 14 18 18 C 1.41400 * 120.21353 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00311 * 207.17827 * 18 17 16 20 20 C 1.39930 * 119.99862 * 27.17089 * 18 17 16 21 21 N 1.30830 * 120.00182 * 12.52867 * 20 18 17 22 22 Si 1.86809 * 120.00352 * 192.52442 * 20 18 17 23 23 H 1.48504 * 109.46966 * 89.99879 * 22 20 18 24 24 H 1.48494 * 109.47335 * 210.00094 * 22 20 18 25 25 H 1.48502 * 109.46705 * 330.00610 * 22 20 18 26 26 C 1.38238 * 119.94485 * 145.32534 * 13 12 10 27 27 H 1.09000 * 109.46695 * 300.90498 * 1 2 3 28 28 H 1.09005 * 109.46800 * 60.90087 * 1 2 3 29 29 H 1.08997 * 109.47148 * 180.89712 * 1 2 3 30 30 H 1.09004 * 109.46800 * 240.00201 * 2 1 3 31 31 H 1.08995 * 109.47170 * 120.00625 * 2 1 3 32 32 H 1.09006 * 109.47414 * 66.51258 * 5 3 2 33 33 H 1.09004 * 109.47542 * 306.51818 * 5 3 2 34 34 H 0.97007 * 119.99382 * 4.55155 * 12 10 3 35 35 H 1.07997 * 119.78427 * 0.02687 * 14 13 12 36 36 H 1.08001 * 119.83857 * 180.26451 * 15 14 13 37 37 H 1.08000 * 120.05504 * 179.76249 * 16 15 14 38 38 H 0.96999 * 120.00557 * 180.02562 * 21 20 18 39 39 H 1.08000 * 120.16230 * 359.96344 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5956 1.9850 -0.8344 5 6 1.6506 2.1211 1.3148 6 6 2.0159 3.6054 1.2504 7 9 1.4255 4.1823 0.1208 8 9 3.4060 3.7406 1.1706 9 9 1.5499 4.2507 2.4010 10 6 3.5403 1.4448 -0.1414 11 8 4.2413 1.2542 0.8300 12 7 4.1033 1.6586 -1.3471 13 6 5.4916 1.5666 -1.4974 14 6 6.3314 1.9748 -0.4639 15 6 7.7066 1.8835 -0.6001 16 6 8.2591 1.3976 -1.7639 17 6 7.4231 0.9864 -2.8188 18 6 7.9831 0.4859 -4.0168 19 1 7.4419 0.5804 -4.9467 20 6 9.2384 -0.1320 -3.9976 21 7 9.7849 -0.4679 -2.8573 22 14 10.1342 -0.4773 -5.6001 23 1 10.9880 0.6861 -5.9506 24 1 10.9837 -1.6850 -5.4420 25 1 9.1429 -0.7074 -6.6816 26 6 6.0273 1.0761 -2.6736 27 1 -0.3633 0.5278 0.8818 28 1 -0.3633 0.4998 -0.8980 29 1 -0.3633 -1.0275 0.0161 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.1865 1.6505 2.1392 33 1 0.5771 2.0175 1.4732 34 1 3.5461 1.8764 -2.1107 35 1 5.9074 2.3610 0.4512 36 1 8.3488 2.1988 0.2090 37 1 9.3321 1.3318 -1.8670 38 1 10.6552 -0.8958 -2.8439 39 1 5.3769 0.7629 -3.4770 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402694628.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:33 Heat of formation + Delta-G solvation = -187.464388 kcal Electronic energy + Delta-G solvation = -26604.332545 eV Core-core repulsion = 22288.905402 eV Total energy + Delta-G solvation = -4315.427142 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.12537 -47.67384 -47.52360 -40.04431 -37.48551 -35.77045 -34.41660 -33.02947 -31.15379 -29.80345 -28.65131 -26.68359 -25.20493 -23.40088 -22.49578 -21.05227 -20.60103 -19.64131 -18.56563 -18.39169 -17.79523 -17.39300 -17.10247 -15.55847 -15.12868 -15.00141 -14.63471 -14.48573 -14.41320 -14.38512 -14.19722 -14.04262 -13.71674 -13.65981 -13.46644 -13.17015 -12.98389 -12.76431 -12.22673 -12.17697 -12.12061 -11.80781 -11.62824 -11.27201 -11.17209 -11.09196 -11.01260 -10.89712 -10.46740 -10.19484 -9.56569 -9.35648 -9.21378 -8.87479 -7.43142 -6.92671 -6.66940 -4.35961 2.53943 2.69743 2.82765 3.08735 3.11572 3.16150 3.29741 3.47225 3.70413 3.84364 3.95763 4.03632 4.55354 4.63600 4.69255 4.73281 4.93720 5.04204 5.10551 5.26845 5.43104 5.49583 5.69745 5.75340 5.82076 5.99626 6.31078 6.58712 6.75740 6.95001 7.02591 7.06505 7.28671 7.61058 7.67161 8.01056 8.05758 8.15150 8.32242 8.57271 8.69775 8.91642 8.98663 10.25662 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.022960 B = 0.003238 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.220958 B = 8644.275847 C = 9217.648782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.110 4.110 4 H 0.100 0.900 5 C -0.155 4.155 6 C 0.446 3.554 7 F -0.187 7.187 8 F -0.168 7.168 9 F -0.187 7.187 10 C 0.505 3.495 11 O -0.513 6.513 12 N -0.661 5.661 13 C 0.146 3.854 14 C -0.220 4.220 15 C -0.100 4.100 16 C -0.162 4.162 17 C 0.120 3.880 18 C -0.466 4.466 19 H 0.076 0.924 20 C 0.075 3.925 21 N -0.801 5.801 22 Si 0.910 3.090 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.241 4.241 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.399 0.601 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.279 0.721 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.964 3.041 4.811 17.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.132 4.132 4 H 0.118 0.882 5 C -0.193 4.193 6 C 0.392 3.608 7 F -0.168 7.168 8 F -0.150 7.150 9 F -0.169 7.169 10 C 0.291 3.709 11 O -0.388 6.388 12 N -0.304 5.304 13 C 0.055 3.945 14 C -0.241 4.241 15 C -0.119 4.119 16 C -0.181 4.181 17 C 0.117 3.883 18 C -0.496 4.496 19 H 0.094 0.906 20 C -0.142 4.142 21 N -0.427 5.427 22 Si 0.735 3.265 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.262 4.262 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.233 0.767 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.139 0.861 38 H 0.090 0.910 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.268 2.797 5.616 17.436 hybrid contribution 0.235 0.114 -1.103 1.133 sum -16.033 2.912 4.514 16.909 Atomic orbital electron populations 1.21864 0.94793 1.02376 1.02108 1.21406 0.96281 0.92850 1.04177 1.21376 0.94157 0.99754 0.97907 0.88188 1.22911 1.05904 0.88703 1.01793 1.20651 0.75447 0.91390 0.73337 1.93164 1.84046 1.87072 1.52555 1.93304 1.29300 1.96587 1.95761 1.93172 1.88656 1.84338 1.50690 1.20317 0.89514 0.77395 0.83714 1.90715 1.63239 1.47397 1.37456 1.43440 1.07384 1.68829 1.10747 1.17451 0.79948 1.00736 0.96383 1.20507 0.92896 1.11156 0.99516 1.20643 0.93867 1.00219 0.97179 1.21448 1.00239 1.02475 0.93966 1.17374 0.89732 0.88203 0.93009 1.19504 1.01489 1.33698 0.94931 0.90590 1.25869 0.97096 0.93607 0.97635 1.69809 1.15934 1.30183 1.26742 0.86287 0.79627 0.78439 0.82151 1.19369 1.20371 1.18750 1.20740 0.95507 1.12716 0.97273 0.92407 0.92233 0.91949 0.90399 0.90435 0.85817 0.86447 0.76665 0.87331 0.89057 0.86109 0.90989 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.71 37.16 0.36 -0.65 16 2 C -0.11 -1.01 5.38 -26.73 -0.14 -1.15 16 3 C -0.11 -1.20 2.11 -91.77 -0.19 -1.39 16 4 H 0.10 0.90 7.38 -51.93 -0.38 0.52 16 5 C -0.15 -1.52 4.56 -26.73 -0.12 -1.64 16 6 C 0.45 5.45 3.14 37.16 0.12 5.57 16 7 F -0.19 -2.22 16.47 2.25 0.04 -2.19 16 8 F -0.17 -2.71 14.80 2.25 0.03 -2.67 16 9 F -0.19 -2.25 17.32 2.25 0.04 -2.21 16 10 C 0.51 8.29 5.03 -10.99 -0.06 8.24 16 11 O -0.51 -10.38 12.79 5.55 0.07 -10.31 16 12 N -0.66 -11.61 5.33 -9.91 -0.05 -11.66 16 13 C 0.15 3.31 6.29 -83.77 -0.53 2.78 16 14 C -0.22 -5.31 8.71 -39.10 -0.34 -5.65 16 15 C -0.10 -2.48 10.02 -39.69 -0.40 -2.87 16 16 C -0.16 -4.29 8.67 -38.84 -0.34 -4.62 16 17 C 0.12 3.20 5.56 -106.85 -0.59 2.60 16 18 C -0.47 -12.32 9.06 -37.75 -0.34 -12.66 16 19 H 0.08 1.92 7.88 -52.48 -0.41 1.50 16 20 C 0.07 1.88 5.23 -17.35 -0.09 1.79 16 21 N -0.80 -20.96 10.83 55.55 0.60 -20.36 16 22 Si 0.91 18.74 29.58 -169.99 -5.03 13.71 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 26 C -0.24 -5.81 9.70 -38.68 -0.38 -6.18 16 27 H 0.06 0.32 6.42 -51.93 -0.33 -0.01 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.12 1.29 7.64 -51.93 -0.40 0.90 16 33 H 0.12 0.76 6.30 -51.93 -0.33 0.43 16 34 H 0.40 5.59 8.75 -40.82 -0.36 5.23 16 35 H 0.11 2.62 6.19 -52.49 -0.33 2.30 16 36 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 37 H 0.12 3.29 6.16 -52.49 -0.32 2.97 16 38 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 39 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 335.30 15.07 5.05 5.05 Total: -1.00 -30.84 335.30 -6.82 -37.66 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -4.53 Total: 8.83 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -3.04 Total: -15.84 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.55 Total: -32.02 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.07 Total: -10.31 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 0.11 Total: -7.07 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.84 -6.82 -37.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402694628.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.808 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds