Wall clock time and date at job start Tue Mar 31 2020 11:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47072 * 2 1 4 4 C 1.52992 * 109.47332 * 120.00014 * 2 1 3 5 5 C 1.50704 * 109.47408 * 184.99654 * 4 2 1 6 6 H 1.08002 * 119.99731 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99906 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00311 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99986 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46842 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46951 * 119.99668 * 9 7 5 12 12 H 1.48494 * 109.47296 * 240.00359 * 9 7 5 13 13 S 1.81399 * 109.47240 * 240.00330 * 2 1 3 14 14 C 1.76204 * 103.00010 * 64.99938 * 13 2 1 15 15 N 1.31391 * 125.37972 * 0.02562 * 14 13 2 16 16 N 1.40425 * 107.05160 * 179.78305 * 15 14 13 17 17 H 0.96997 * 126.87008 * 180.26003 * 16 15 14 18 18 C 1.36058 * 106.26070 * 0.34710 * 16 15 14 19 19 C 1.46754 * 126.13219 * 179.91424 * 18 16 15 20 20 C 1.34568 * 119.99945 * 185.08293 * 19 18 16 21 21 C 1.47288 * 119.99905 * 10.42043 * 20 19 18 22 22 C 1.39781 * 120.16779 * 43.78771 * 21 20 19 23 23 C 1.37908 * 119.83293 * 179.97438 * 22 21 20 24 24 C 1.38397 * 120.16478 * 359.97438 * 23 22 21 25 25 C 1.38384 * 120.33537 * 0.02562 * 24 23 22 26 26 C 1.37906 * 120.16700 * 359.97438 * 25 24 23 27 27 N 1.32201 * 107.73257 * 359.65514 * 18 16 15 28 28 H 1.09004 * 109.47532 * 59.99384 * 1 2 3 29 29 H 1.08994 * 109.47414 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47389 * 300.00186 * 1 2 3 31 31 H 1.08998 * 109.47420 * 305.00544 * 4 2 1 32 32 H 1.09004 * 109.47081 * 64.99650 * 4 2 1 33 33 H 0.96996 * 120.00470 * 179.97438 * 8 7 5 34 34 H 1.08004 * 120.00266 * 5.08652 * 19 18 16 35 35 H 1.07996 * 119.99979 * 190.41693 * 20 19 18 36 36 H 1.08005 * 120.08546 * 0.02562 * 22 21 20 37 37 H 1.07997 * 119.91848 * 180.02562 * 23 22 21 38 38 H 1.07997 * 119.82935 * 179.74537 * 24 23 22 39 39 H 1.07998 * 119.91568 * 179.97438 * 25 24 23 40 40 H 1.08002 * 120.08773 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3126 6 1 4.0789 -0.0855 0.5394 7 6 4.2304 -1.1936 2.3577 8 7 3.5765 -1.8387 3.2988 9 14 6.0921 -1.0613 2.4367 10 1 6.5836 -0.2899 1.2667 11 1 6.4862 -0.3660 3.6883 12 1 6.6863 -2.4220 2.4180 13 16 2.1346 -0.8550 -1.4812 14 6 1.5827 0.1848 -2.7922 15 7 0.9008 1.2982 -2.6445 16 7 0.6704 1.8136 -3.9303 17 1 0.1958 2.6294 -4.1538 18 6 1.2444 0.9387 -4.7999 19 6 1.2596 1.0568 -6.2626 20 6 1.7756 0.0656 -7.0124 21 6 2.1133 -1.2272 -6.3927 22 6 1.2321 -1.8230 -5.4859 23 6 1.5550 -3.0338 -4.9101 24 6 2.7478 -3.6591 -5.2285 25 6 3.6253 -3.0755 -6.1253 26 6 3.3163 -1.8650 -6.7092 27 7 1.7909 -0.0339 -4.0907 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6053 -0.2618 2.1369 32 1 1.7516 -1.7715 1.2055 33 1 4.0609 -2.2461 4.0339 34 1 0.8566 1.9392 -6.7374 35 1 1.9421 0.2181 -8.0685 36 1 0.3002 -1.3367 -5.2374 37 1 0.8749 -3.4956 -4.2096 38 1 2.9971 -4.6052 -4.7712 39 1 4.5545 -3.5692 -6.3686 40 1 4.0019 -1.4108 -7.4093 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412987618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:31 Heat of formation + Delta-G solvation = 129.214324 kcal Electronic energy + Delta-G solvation = -23043.298018 eV Core-core repulsion = 19758.505458 eV Total energy + Delta-G solvation = -3284.792560 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.69680 -38.89759 -34.91871 -34.53079 -32.41536 -32.06216 -31.01271 -30.41306 -29.05141 -27.41849 -24.03388 -23.28538 -22.91200 -22.24145 -21.74271 -20.38031 -19.37609 -18.04218 -16.51927 -16.32005 -15.97296 -15.63372 -15.27707 -14.86422 -14.73012 -14.46365 -14.08235 -13.79912 -13.20547 -12.96912 -12.68080 -12.52091 -12.48972 -11.89339 -11.67032 -11.54297 -11.12296 -11.08046 -10.95592 -10.87890 -10.70388 -10.55879 -10.45806 -10.25220 -10.03919 -9.49187 -9.32902 -9.17310 -9.09872 -8.52898 -8.36326 -7.90925 -6.97181 -6.01382 -4.03083 0.59487 1.67487 1.75143 1.86086 2.37592 2.68234 3.22277 3.27578 3.34336 3.41817 3.48188 4.08420 4.31374 4.48219 4.57681 4.82658 5.08592 5.17189 5.31589 5.33249 5.36335 5.61410 5.73663 5.74732 5.85228 5.87546 6.00305 6.07932 6.12694 6.22151 6.28166 6.43546 6.50914 6.62968 6.67133 6.73554 6.75761 6.80921 7.13538 7.22779 7.52361 7.59384 7.96280 8.11867 8.32601 9.02179 9.61359 11.09787 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.014033 B = 0.004075 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.785351 B = 6869.320165 C = 7880.696623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.068 4.068 3 H 0.083 0.917 4 C 0.039 3.961 5 C -0.520 4.520 6 H 0.064 0.936 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.283 1.283 13 S 0.040 5.960 14 C 0.208 3.792 15 N -0.319 5.319 16 N -0.486 5.486 17 H 0.435 0.565 18 C 0.307 3.693 19 C -0.124 4.124 20 C -0.028 4.028 21 C -0.080 4.080 22 C -0.021 4.021 23 C -0.126 4.126 24 C -0.099 4.099 25 C -0.137 4.137 26 C -0.096 4.096 27 N -0.491 5.491 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.038 0.962 32 H 0.028 0.972 33 H 0.261 0.739 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.652 2.981 -22.187 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.197 4.197 3 H 0.102 0.898 4 C 0.001 3.999 5 C -0.558 4.558 6 H 0.082 0.918 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.209 1.209 13 S 0.268 5.732 14 C -0.180 4.180 15 N -0.154 5.154 16 N -0.205 5.205 17 H 0.280 0.720 18 C 0.031 3.969 19 C -0.144 4.144 20 C -0.051 4.051 21 C -0.081 4.081 22 C -0.041 4.041 23 C -0.144 4.144 24 C -0.117 4.117 25 C -0.156 4.156 26 C -0.114 4.114 27 N -0.220 5.220 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.123 0.877 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.044 1.904 -21.420 22.338 hybrid contribution 0.051 2.066 0.039 2.067 sum -5.992 3.970 -21.381 22.557 Atomic orbital electron populations 1.22100 0.94647 1.01972 1.01688 1.23725 0.97164 1.02807 0.96027 0.89837 1.19054 0.96536 0.95676 0.88675 1.21303 0.91484 1.34648 1.08406 0.91789 1.24968 0.98476 0.95097 0.95534 1.69959 1.35547 1.35775 1.12098 0.86542 0.85756 0.77912 0.77960 1.19501 1.21104 1.20898 1.86251 1.67874 1.27525 0.91522 1.26870 0.97665 0.96075 0.97382 1.78464 1.25211 1.13486 0.98194 1.48232 1.45236 1.22551 1.04482 0.71989 1.22845 0.93446 0.87449 0.93177 1.20966 1.06165 1.01220 0.86082 1.22302 0.92327 0.91508 0.98979 1.18708 0.95853 0.94192 0.99318 1.20823 0.98084 0.93214 0.91940 1.20914 0.97576 0.95933 1.00025 1.21171 0.94027 0.99703 0.96848 1.20891 0.99569 0.96263 0.98847 1.21056 0.95640 0.95028 0.99709 1.71362 1.25369 1.24264 1.00985 0.92663 0.92366 0.92201 0.94352 0.95380 0.92975 0.84163 0.84514 0.87724 0.86445 0.86496 0.86595 0.86671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.06 37.16 0.34 -2.33 16 2 C -0.07 -1.45 2.47 -26.74 -0.07 -1.52 16 3 H 0.08 1.86 8.14 -51.92 -0.42 1.43 16 4 C 0.04 1.00 4.45 -27.88 -0.12 0.87 16 5 C -0.52 -14.51 8.53 -34.44 -0.29 -14.81 16 6 H 0.06 1.79 7.60 -52.49 -0.40 1.39 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 S 0.04 0.84 20.90 -107.50 -2.25 -1.41 16 14 C 0.21 3.92 8.01 -91.18 -0.73 3.19 16 15 N -0.32 -5.61 10.65 30.09 0.32 -5.29 16 16 N -0.49 -6.38 7.52 32.18 0.24 -6.13 16 17 H 0.44 3.89 8.96 -182.35 -1.63 2.25 16 18 C 0.31 4.09 6.92 -154.88 -1.07 3.02 16 19 C -0.12 -1.11 10.10 -37.44 -0.38 -1.49 16 20 C -0.03 -0.25 9.81 -37.20 -0.36 -0.61 16 21 C -0.08 -0.96 4.67 -105.06 -0.49 -1.45 16 22 C -0.02 -0.29 6.36 -39.13 -0.25 -0.53 16 23 C -0.13 -1.72 10.03 -39.64 -0.40 -2.12 16 24 C -0.10 -1.28 10.04 -39.47 -0.40 -1.67 16 25 C -0.14 -1.65 10.03 -39.65 -0.40 -2.05 16 26 C -0.10 -1.11 9.79 -39.12 -0.38 -1.50 16 27 N -0.49 -8.22 6.53 -11.56 -0.08 -8.30 16 28 H 0.05 0.98 6.21 -51.93 -0.32 0.66 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.14 0.72 8.06 -52.48 -0.42 0.29 16 35 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.10 1.43 6.95 -52.48 -0.36 1.07 16 37 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 39 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 352.57 15.07 5.31 5.31 Total: -1.00 -33.03 352.57 -12.34 -45.37 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.51 Total: 0.71 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -5.10 Total: -21.36 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 1.22 Total: -45.50 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.25 Total: -1.41 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.03 -12.34 -45.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412987618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.586 kcal (2) G-P(sol) polarization free energy of solvation -33.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds