Wall clock time and date at job start Tue Mar 31 2020 11:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46616 * 2 1 4 4 C 1.53002 * 109.47237 * 240.00264 * 2 1 3 5 5 C 1.50698 * 109.47335 * 64.99669 * 4 2 1 6 6 C 1.38260 * 119.99559 * 89.99610 * 5 4 2 7 7 C 1.38212 * 119.99650 * 179.71963 * 6 5 4 8 8 C 1.38254 * 120.00319 * 0.26336 * 7 6 5 9 9 C 1.38216 * 119.99725 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99801 * 179.97438 * 9 8 7 11 11 F 1.39900 * 109.47095 * 359.97438 * 10 9 8 12 12 F 1.39894 * 109.46930 * 120.00242 * 10 9 8 13 13 F 1.39903 * 109.46738 * 239.99937 * 10 9 8 14 14 C 1.38208 * 120.00309 * 270.23770 * 5 4 2 15 15 C 1.50698 * 109.46738 * 119.99766 * 2 1 3 16 16 O 1.21286 * 119.99522 * 120.00366 * 15 2 1 17 17 N 1.34769 * 120.00438 * 300.00231 * 15 2 1 18 18 C 1.46503 * 120.00357 * 180.02562 * 17 15 2 19 19 C 1.50697 * 109.47135 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00385 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99695 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00008 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99962 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47034 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47330 * 120.00089 * 23 21 19 26 26 H 1.48507 * 109.46778 * 239.99633 * 23 21 19 27 27 H 1.09000 * 109.46646 * 60.00196 * 1 2 3 28 28 H 1.09002 * 109.47013 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47578 * 299.99977 * 1 2 3 30 30 H 1.09000 * 109.46885 * 304.99831 * 4 2 1 31 31 H 1.08998 * 109.47085 * 185.00046 * 4 2 1 32 32 H 1.08002 * 120.00476 * 0.02562 * 6 5 4 33 33 H 1.07999 * 119.99941 * 180.27784 * 7 6 5 34 34 H 1.07997 * 120.00486 * 179.97438 * 8 7 6 35 35 H 1.07999 * 119.99951 * 0.02562 * 14 5 4 36 36 H 0.97004 * 120.00217 * 359.97438 * 17 15 2 37 37 H 1.09002 * 109.46771 * 300.00003 * 18 17 15 38 38 H 1.09005 * 109.46802 * 59.99851 * 18 17 15 39 39 H 0.97007 * 119.99937 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6414 0.0571 -2.4766 6 6 2.4816 1.0333 -2.9792 7 6 2.1186 1.7431 -4.1083 8 6 0.9129 1.4807 -4.7318 9 6 0.0703 0.5089 -4.2258 10 6 -1.2443 0.2233 -4.9052 11 9 -1.3871 1.0619 -6.0159 12 9 -1.2736 -1.1119 -5.3215 13 9 -2.2927 0.4554 -4.0084 14 6 0.4337 -0.2015 -3.0968 15 6 2.0323 -0.7104 1.2305 16 8 2.7296 -1.6965 1.1192 17 7 1.7067 -0.2500 2.4545 18 6 2.1954 -0.9402 3.6508 19 6 1.6934 -0.2295 4.8812 20 1 1.0721 0.6483 4.7821 21 6 2.0274 -0.7000 6.1334 22 7 2.7836 -1.7692 6.2541 23 14 1.4046 0.1805 7.6587 24 1 0.5790 1.3468 7.2545 25 1 0.5806 -0.7533 8.4676 26 1 2.5596 0.6483 8.4664 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6055 -1.7197 -1.2952 31 1 3.1264 -0.7994 -1.2056 32 1 3.4238 1.2378 -2.4926 33 1 2.7769 2.5025 -4.5035 34 1 0.6290 2.0356 -5.6138 35 1 -0.2246 -0.9611 -2.7017 36 1 1.1493 0.5389 2.5436 37 1 1.8324 -1.9681 3.6509 38 1 3.2854 -0.9398 3.6506 39 1 3.0182 -2.1004 7.1352 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427609820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:24 Heat of formation + Delta-G solvation = -186.890556 kcal Electronic energy + Delta-G solvation = -25474.204846 eV Core-core repulsion = 21158.802587 eV Total energy + Delta-G solvation = -4315.402259 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.41923 -47.95164 -47.86518 -40.11737 -38.91820 -35.08601 -34.20144 -32.48184 -32.20286 -31.06064 -27.37656 -26.95954 -26.25839 -23.90818 -22.69198 -22.25006 -21.01270 -19.38297 -18.73582 -18.62404 -18.24215 -17.17391 -16.60260 -15.90163 -15.66751 -15.31144 -14.83260 -14.79479 -14.61189 -14.58226 -14.45522 -14.32193 -14.09202 -14.03807 -13.57136 -13.47302 -13.21520 -12.90390 -12.74362 -12.57324 -12.11084 -11.98199 -11.78539 -11.53236 -11.32751 -11.18566 -10.97769 -10.94508 -10.86986 -10.33441 -9.52533 -9.40413 -9.18659 -8.93487 -8.76343 -7.90911 -6.19154 -4.26064 0.62733 0.92692 2.38705 3.15169 3.21691 3.29004 3.31938 3.33346 3.43965 3.73789 4.01707 4.16098 4.32668 4.50851 4.54358 4.72914 4.89543 4.92762 5.00950 5.09749 5.17212 5.21408 5.32576 5.54178 5.61095 5.71034 5.80479 5.83940 5.90035 5.97609 6.16365 6.19156 6.32197 6.47122 7.28031 7.40868 7.49007 7.63990 7.94622 8.60021 8.75274 9.06864 9.40815 10.91068 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.024746 B = 0.002420 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.209332 B =11567.808210 C =11952.275598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 H 0.093 0.907 4 C -0.064 4.064 5 C -0.071 4.071 6 C -0.084 4.084 7 C -0.118 4.118 8 C -0.082 4.082 9 C -0.183 4.183 10 C 0.508 3.492 11 F -0.179 7.179 12 F -0.177 7.177 13 F -0.176 7.176 14 C -0.066 4.066 15 C 0.502 3.498 16 O -0.557 6.557 17 N -0.710 5.710 18 C 0.249 3.751 19 C -0.543 4.543 20 H 0.063 0.937 21 C 0.063 3.937 22 N -0.885 5.885 23 Si 0.903 3.097 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.390 0.610 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.544 8.007 -23.654 25.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 H 0.111 0.889 4 C -0.102 4.102 5 C -0.071 4.071 6 C -0.102 4.102 7 C -0.136 4.136 8 C -0.100 4.100 9 C -0.185 4.185 10 C 0.454 3.546 11 F -0.161 7.161 12 F -0.158 7.158 13 F -0.157 7.157 14 C -0.084 4.084 15 C 0.286 3.714 16 O -0.437 6.437 17 N -0.358 5.358 18 C 0.128 3.872 19 C -0.581 4.581 20 H 0.081 0.919 21 C -0.140 4.140 22 N -0.523 5.523 23 Si 0.731 3.269 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.223 0.777 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.994 7.155 -23.564 25.128 hybrid contribution -0.818 0.770 0.843 1.405 sum -5.812 7.925 -22.721 24.755 Atomic orbital electron populations 1.21869 0.93222 1.02822 1.02576 1.21281 0.97528 1.00702 0.93297 0.88877 1.20459 1.02731 0.98161 0.88809 1.19988 0.93533 0.96655 0.96973 1.21402 0.99575 0.94002 0.95202 1.21154 0.96268 1.00227 0.95982 1.20970 0.93739 0.95670 0.99621 1.19937 0.94908 1.03451 1.00174 1.18337 0.85404 0.74224 0.76630 1.93155 1.96342 1.71704 1.54877 1.93222 1.96872 1.35041 1.90691 1.93230 1.60555 1.94231 1.67727 1.20861 0.96453 0.98084 0.92968 1.20363 0.81081 0.85034 0.84898 1.90660 1.39098 1.26916 1.86980 1.46468 1.51592 1.31156 1.06589 1.19113 0.95276 0.92890 0.79915 1.21262 1.33103 1.13170 0.90583 0.91868 1.24958 0.94835 0.94983 0.99269 1.69986 1.35726 1.22471 1.24100 0.86366 0.78638 0.79508 0.82430 1.19618 1.20778 1.20792 0.91829 0.91966 0.91682 0.89825 0.89446 0.84815 0.84836 0.84702 0.84774 0.77686 0.95540 0.95561 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.65 37.16 0.32 -1.38 16 2 C -0.11 -1.39 2.71 -91.77 -0.25 -1.64 16 3 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 4 C -0.06 -0.76 4.19 -27.88 -0.12 -0.88 16 5 C -0.07 -0.71 4.72 -104.63 -0.49 -1.20 16 6 C -0.08 -0.71 9.70 -39.58 -0.38 -1.10 16 7 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 8 C -0.08 -0.66 9.43 -39.58 -0.37 -1.03 16 9 C -0.18 -1.72 5.37 -104.62 -0.56 -2.28 16 10 C 0.51 4.93 3.32 36.01 0.12 5.04 16 11 F -0.18 -1.68 15.97 2.25 0.04 -1.65 16 12 F -0.18 -1.84 17.24 2.25 0.04 -1.80 16 13 F -0.18 -1.84 17.24 2.25 0.04 -1.80 16 14 C -0.07 -0.64 7.50 -39.59 -0.30 -0.94 16 15 C 0.50 9.48 7.15 -10.99 -0.08 9.40 16 16 O -0.56 -12.81 15.92 5.55 0.09 -12.72 16 17 N -0.71 -14.49 5.44 -61.47 -0.33 -14.83 16 18 C 0.25 6.49 5.43 -5.19 -0.03 6.47 16 19 C -0.54 -14.56 9.28 -34.44 -0.32 -14.88 16 20 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 23 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H 0.06 0.63 6.25 -51.93 -0.32 0.31 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.74 7.57 -51.93 -0.39 0.35 16 30 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 31 H 0.09 1.10 7.90 -51.93 -0.41 0.69 16 32 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.14 0.87 7.16 -52.49 -0.38 0.49 16 35 H 0.13 1.24 8.03 -52.49 -0.42 0.82 16 36 H 0.39 6.86 7.74 -40.82 -0.32 6.54 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 346.22 15.07 5.22 5.22 Total: -1.00 -31.52 346.22 -6.89 -38.40 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -4.73 Total: 2.73 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -2.96 Total: -4.04 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.40 Total: -39.99 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.11 Total: -5.25 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.52 -6.89 -38.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427609820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.488 kcal (2) G-P(sol) polarization free energy of solvation -31.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds