Wall clock time and date at job start Tue Mar 31 2020 11:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46616 * 2 1 4 4 C 1.53002 * 109.47237 * 240.00264 * 2 1 3 5 5 C 1.50698 * 109.47335 * 64.99669 * 4 2 1 6 6 C 1.38260 * 119.99559 * 89.99610 * 5 4 2 7 7 C 1.38212 * 119.99650 * 179.71963 * 6 5 4 8 8 C 1.38254 * 120.00319 * 0.26336 * 7 6 5 9 9 C 1.38216 * 119.99725 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99801 * 179.97438 * 9 8 7 11 11 F 1.39900 * 109.47095 * 359.97438 * 10 9 8 12 12 F 1.39894 * 109.46930 * 120.00242 * 10 9 8 13 13 F 1.39903 * 109.46738 * 239.99937 * 10 9 8 14 14 C 1.38208 * 120.00309 * 270.23770 * 5 4 2 15 15 C 1.50698 * 109.46738 * 119.99766 * 2 1 3 16 16 O 1.21286 * 119.99522 * 120.00366 * 15 2 1 17 17 N 1.34769 * 120.00438 * 300.00231 * 15 2 1 18 18 C 1.46503 * 120.00357 * 180.02562 * 17 15 2 19 19 C 1.50697 * 109.47135 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00385 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99695 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00008 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99962 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47034 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47330 * 120.00089 * 23 21 19 26 26 H 1.48507 * 109.46778 * 239.99633 * 23 21 19 27 27 H 1.09000 * 109.46646 * 60.00196 * 1 2 3 28 28 H 1.09002 * 109.47013 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47578 * 299.99977 * 1 2 3 30 30 H 1.09000 * 109.46885 * 304.99831 * 4 2 1 31 31 H 1.08998 * 109.47085 * 185.00046 * 4 2 1 32 32 H 1.08002 * 120.00476 * 0.02562 * 6 5 4 33 33 H 1.07999 * 119.99941 * 180.27784 * 7 6 5 34 34 H 1.07997 * 120.00486 * 179.97438 * 8 7 6 35 35 H 1.07999 * 119.99951 * 0.02562 * 14 5 4 36 36 H 0.97004 * 120.00217 * 359.97438 * 17 15 2 37 37 H 1.09002 * 109.46771 * 300.00003 * 18 17 15 38 38 H 1.09005 * 109.46802 * 59.99851 * 18 17 15 39 39 H 0.97007 * 119.99937 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6414 0.0571 -2.4766 6 6 2.4816 1.0333 -2.9792 7 6 2.1186 1.7431 -4.1083 8 6 0.9129 1.4807 -4.7318 9 6 0.0703 0.5089 -4.2258 10 6 -1.2443 0.2233 -4.9052 11 9 -1.3871 1.0619 -6.0159 12 9 -1.2736 -1.1119 -5.3215 13 9 -2.2927 0.4554 -4.0084 14 6 0.4337 -0.2015 -3.0968 15 6 2.0323 -0.7104 1.2305 16 8 2.7296 -1.6965 1.1192 17 7 1.7067 -0.2500 2.4545 18 6 2.1954 -0.9402 3.6508 19 6 1.6934 -0.2295 4.8812 20 1 1.0721 0.6483 4.7821 21 6 2.0274 -0.7000 6.1334 22 7 2.7836 -1.7692 6.2541 23 14 1.4046 0.1805 7.6587 24 1 0.5790 1.3468 7.2545 25 1 0.5806 -0.7533 8.4676 26 1 2.5596 0.6483 8.4664 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6055 -1.7197 -1.2952 31 1 3.1264 -0.7994 -1.2056 32 1 3.4238 1.2378 -2.4926 33 1 2.7769 2.5025 -4.5035 34 1 0.6290 2.0356 -5.6138 35 1 -0.2246 -0.9611 -2.7017 36 1 1.1493 0.5389 2.5436 37 1 1.8324 -1.9681 3.6509 38 1 3.2854 -0.9398 3.6506 39 1 3.0182 -2.1004 7.1352 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427609820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:23 Heat of formation + Delta-G solvation = -205.381711 kcal Electronic energy + Delta-G solvation = -25475.006682 eV Core-core repulsion = 21158.802587 eV Total energy + Delta-G solvation = -4316.204096 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.17953 -48.70167 -48.64789 -41.10951 -40.20187 -36.32223 -35.94807 -34.35836 -32.97644 -31.96248 -29.26592 -27.91929 -26.97688 -25.47663 -23.82298 -23.29931 -22.03923 -20.90619 -19.50269 -19.37517 -19.01271 -18.85831 -17.57169 -17.23755 -17.07761 -16.61256 -16.22020 -16.04314 -15.56760 -15.41823 -15.36928 -15.09036 -14.90671 -14.81529 -14.78648 -14.75603 -14.27785 -14.07161 -13.85807 -13.69701 -13.52902 -13.37741 -13.07976 -12.88866 -12.75789 -12.32231 -12.22511 -12.19560 -12.05185 -11.90069 -11.45431 -10.81815 -10.66271 -10.15081 -9.81996 -9.81110 -8.29660 -6.46012 -0.04002 0.26255 1.43267 1.44019 1.57581 1.65434 1.77753 2.31100 2.45425 2.64380 2.72111 3.01802 3.05464 3.41044 3.65436 3.84314 3.85436 3.99233 4.06506 4.18326 4.30320 4.39031 4.46887 4.60073 4.81783 4.85107 4.86997 4.97854 5.12907 5.17906 5.20683 5.24603 5.26846 5.35493 5.49574 5.54437 5.69483 5.82102 5.85326 6.65583 6.91400 7.23460 7.49761 8.82705 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.024746 B = 0.002420 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.209332 B =11567.808210 C =11952.275598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.120 0.880 4 C -0.058 4.058 5 C -0.080 4.080 6 C -0.085 4.085 7 C -0.111 4.111 8 C -0.080 4.080 9 C -0.193 4.193 10 C 0.509 3.491 11 F -0.177 7.177 12 F -0.184 7.184 13 F -0.182 7.182 14 C -0.074 4.074 15 C 0.498 3.502 16 O -0.602 6.602 17 N -0.706 5.706 18 C 0.265 3.735 19 C -0.554 4.554 20 H 0.083 0.917 21 C 0.003 3.997 22 N -0.931 5.931 23 Si 0.984 3.016 24 H -0.253 1.253 25 H -0.280 1.280 26 H -0.279 1.279 27 H 0.085 0.915 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.147 0.853 33 H 0.164 0.836 34 H 0.153 0.847 35 H 0.132 0.868 36 H 0.407 0.593 37 H -0.014 1.014 38 H -0.012 1.012 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.458 10.839 -24.568 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.138 0.862 4 C -0.096 4.096 5 C -0.080 4.080 6 C -0.102 4.102 7 C -0.129 4.129 8 C -0.097 4.097 9 C -0.194 4.194 10 C 0.455 3.545 11 F -0.158 7.158 12 F -0.165 7.165 13 F -0.163 7.163 14 C -0.092 4.092 15 C 0.286 3.714 16 O -0.484 6.484 17 N -0.355 5.355 18 C 0.142 3.858 19 C -0.592 4.592 20 H 0.101 0.899 21 C -0.196 4.196 22 N -0.570 5.570 23 Si 0.807 3.193 24 H -0.176 1.176 25 H -0.205 1.205 26 H -0.204 1.204 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.165 0.835 33 H 0.181 0.819 34 H 0.170 0.830 35 H 0.150 0.850 36 H 0.243 0.757 37 H 0.004 0.996 38 H 0.006 0.994 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.937 10.022 -24.516 27.143 hybrid contribution -0.498 -0.144 1.019 1.143 sum -6.434 9.878 -23.497 26.289 Atomic orbital electron populations 1.21869 0.91634 1.02704 1.03891 1.21252 0.98580 1.01111 0.90236 0.86188 1.20322 1.01937 0.97849 0.89459 1.19734 0.94197 0.97488 0.96554 1.21621 0.99732 0.93359 0.95535 1.21475 0.96182 1.00164 0.95068 1.21273 0.93590 0.94955 0.99923 1.19969 0.94990 1.04166 1.00261 1.18398 0.85513 0.73942 0.76619 1.93156 1.96348 1.71557 1.54757 1.93209 1.96905 1.35632 1.90771 1.93216 1.60929 1.94238 1.67942 1.20864 0.96561 0.98365 0.93417 1.21462 0.79676 0.84394 0.85889 1.90637 1.40993 1.29125 1.87681 1.46219 1.52061 1.31554 1.05716 1.18540 0.92900 0.91670 0.82648 1.21650 1.33129 1.13657 0.90779 0.89852 1.26061 0.94764 0.95632 1.03171 1.70144 1.37263 1.24417 1.25169 0.85126 0.78127 0.78566 0.77491 1.17594 1.20538 1.20445 0.89606 0.92908 0.91194 0.91239 0.90445 0.83489 0.81872 0.82956 0.84994 0.75681 0.99579 0.99422 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.65 71.98 0.62 -2.46 16 2 C -0.09 -2.27 2.71 -11.54 -0.03 -2.30 16 3 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 4 C -0.06 -1.36 4.19 29.85 0.12 -1.23 16 5 C -0.08 -1.45 4.72 -19.87 -0.09 -1.54 16 6 C -0.08 -1.20 9.70 22.27 0.22 -0.99 16 7 C -0.11 -1.24 10.05 22.27 0.22 -1.02 16 8 C -0.08 -1.04 9.43 22.27 0.21 -0.83 16 9 C -0.19 -3.24 5.37 -19.86 -0.11 -3.35 16 10 C 0.51 9.16 3.32 71.24 0.24 9.40 16 11 F -0.18 -3.00 15.97 44.97 0.72 -2.28 16 12 F -0.18 -3.68 17.24 44.97 0.78 -2.90 16 13 F -0.18 -3.58 17.24 44.97 0.78 -2.80 16 14 C -0.07 -1.34 7.50 22.27 0.17 -1.17 16 15 C 0.50 19.16 7.15 87.66 0.63 19.79 16 16 O -0.60 -28.97 15.92 -3.05 -0.05 -29.02 16 17 N -0.71 -29.20 5.44 -466.79 -2.54 -31.74 16 18 C 0.27 14.45 5.43 85.63 0.46 14.92 16 19 C -0.55 -29.91 9.28 25.60 0.24 -29.67 16 20 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 21 C 0.00 0.18 5.46 84.65 0.46 0.64 16 22 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 23 Si 0.98 42.02 29.54 68.60 2.03 44.05 16 24 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 25 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 26 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 27 H 0.09 1.51 6.25 -2.39 -0.01 1.49 16 28 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.44 7.57 -2.39 -0.02 1.42 16 30 H 0.07 1.80 8.09 -2.39 -0.02 1.78 16 31 H 0.08 1.95 7.90 -2.39 -0.02 1.94 16 32 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 34 H 0.15 1.43 7.16 -2.91 -0.02 1.41 16 35 H 0.13 2.36 8.03 -2.91 -0.02 2.34 16 36 H 0.41 13.92 7.74 -92.71 -0.72 13.20 16 37 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 38 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 39 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 Total: -1.00 -70.87 346.22 5.72 -65.15 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.37 Total: 15.06 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 3.36 Total: 0.20 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -2.25 Total: -87.45 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.05 Total: -29.02 kcal Atomic # 9 Polarization: -10.25 SS G_CDS: 2.27 Total: -7.98 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -70.87 5.72 -65.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427609820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.236 kcal (2) G-P(sol) polarization free energy of solvation -70.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds