Wall clock time and date at job start Tue Mar 31 2020 11:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 5 5 C 1.50701 * 109.47212 * 295.00231 * 4 2 1 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99566 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.46835 * 180.02562 * 8 7 5 10 10 H 1.07995 * 120.00280 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99788 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99711 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00219 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.46794 * 90.00022 * 13 11 9 15 15 H 1.48505 * 109.46876 * 210.00288 * 13 11 9 16 16 H 1.48501 * 109.46982 * 330.00118 * 13 11 9 17 17 C 1.50698 * 109.47043 * 240.00465 * 2 1 3 18 18 C 1.38254 * 119.99631 * 299.98943 * 17 2 1 19 19 C 1.38217 * 120.00137 * 180.02562 * 18 17 2 20 20 C 1.38264 * 119.99603 * 359.97438 * 19 18 17 21 21 C 1.38213 * 120.00296 * 359.97438 * 20 19 18 22 22 C 1.38214 * 120.00132 * 119.72998 * 17 2 1 23 23 C 1.50699 * 120.00189 * 359.97438 * 22 17 2 24 24 F 1.39890 * 109.47257 * 180.02562 * 23 22 17 25 25 F 1.39903 * 109.47093 * 300.00547 * 23 22 17 26 26 F 1.39899 * 109.46896 * 60.00328 * 23 22 17 27 27 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 28 28 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 29 29 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 175.00232 * 4 2 1 31 31 H 1.09001 * 109.46832 * 55.00423 * 4 2 1 32 32 H 0.96995 * 120.00011 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.47487 * 300.00114 * 8 7 5 34 34 H 1.09002 * 109.47182 * 60.00342 * 8 7 5 35 35 H 0.97009 * 119.99937 * 179.97438 * 12 11 9 36 36 H 1.08000 * 120.00403 * 359.97438 * 18 17 2 37 37 H 1.07997 * 120.00177 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.99826 * 179.97438 * 20 19 18 39 39 H 1.07989 * 120.00054 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 8 1.0109 1.0870 2.3632 7 7 1.9845 -0.3918 3.7002 8 6 1.5964 0.3645 4.8933 9 6 2.0989 -0.3458 6.1238 10 1 2.6523 -1.2681 6.0267 11 6 1.8520 0.1819 7.3734 12 7 2.2901 -0.4383 8.4473 13 14 0.8941 1.7768 7.5414 14 1 -0.5551 1.4740 7.6560 15 1 1.3465 2.5002 8.7569 16 1 1.1297 2.6240 6.3447 17 6 2.0323 -0.7103 -1.2305 18 6 1.6984 -2.0340 -1.4492 19 6 2.1595 -2.6857 -2.5775 20 6 2.9542 -2.0136 -3.4877 21 6 3.2871 -0.6901 -3.2696 22 6 2.8223 -0.0369 -2.1431 23 6 3.1809 1.4077 -1.9079 24 9 3.9807 1.8669 -2.9598 25 9 2.0120 2.1737 -1.8426 26 9 3.8825 1.5239 -0.7031 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 3.1264 -0.7993 1.2056 31 1 1.6054 -1.7197 1.2951 32 1 2.4884 -1.2156 3.7908 33 1 2.0309 1.3632 4.8478 34 1 0.5101 0.4426 4.9366 35 1 2.1168 -0.0669 9.3265 36 1 1.0780 -2.5591 -0.7380 37 1 1.8991 -3.7198 -2.7481 38 1 3.3149 -2.5230 -4.3691 39 1 3.9082 -0.1653 -3.9803 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427628534.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:34 Heat of formation + Delta-G solvation = -175.730897 kcal Electronic energy + Delta-G solvation = -26475.299856 eV Core-core repulsion = 22160.381516 eV Total energy + Delta-G solvation = -4314.918340 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.31442 -47.83917 -47.67790 -40.20828 -38.94303 -35.34788 -34.18669 -32.37743 -32.29309 -30.34089 -28.72485 -26.89607 -26.16720 -24.10370 -22.43548 -21.99366 -20.58374 -19.65961 -18.62755 -18.55699 -18.46357 -17.27832 -16.41624 -15.83677 -15.62965 -15.25513 -15.04514 -14.82470 -14.63308 -14.58847 -14.16284 -14.11398 -13.93880 -13.87437 -13.83068 -13.41009 -13.35548 -12.94672 -12.74991 -12.59800 -12.33916 -12.26958 -11.73928 -11.70944 -11.22401 -11.04775 -10.98304 -10.75221 -10.70375 -9.96920 -9.54429 -9.50014 -9.23999 -9.06598 -8.77883 -8.14041 -6.21812 -4.24021 0.62570 0.91864 2.52592 3.16384 3.22152 3.27343 3.33521 3.42312 3.56535 3.87095 3.91390 4.29087 4.33267 4.45378 4.46645 4.61302 4.85699 4.95222 5.03939 5.09079 5.13843 5.21232 5.37598 5.55600 5.61919 5.66001 5.70053 5.85347 5.91581 6.01467 6.06082 6.27997 6.41836 6.48992 6.81320 7.07441 7.23248 7.39631 8.12973 8.51552 8.74828 8.93554 9.38509 10.90145 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.020911 B = 0.003203 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.683057 B = 8741.024157 C = 9293.618003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.054 4.054 3 H 0.092 0.908 4 C -0.133 4.133 5 C 0.501 3.499 6 O -0.554 6.554 7 N -0.706 5.706 8 C 0.220 3.780 9 C -0.544 4.544 10 H 0.079 0.921 11 C 0.077 3.923 12 N -0.893 5.893 13 Si 0.877 3.123 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.260 1.260 17 C -0.019 4.019 18 C -0.117 4.117 19 C -0.085 4.085 20 C -0.130 4.130 21 C -0.072 4.072 22 C -0.182 4.182 23 C 0.506 3.494 24 F -0.181 7.181 25 F -0.172 7.172 26 F -0.171 7.171 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.396 0.604 33 H 0.025 0.975 34 H 0.020 0.980 35 H 0.268 0.732 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.141 -4.202 -26.144 26.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 H 0.110 0.890 4 C -0.173 4.173 5 C 0.286 3.714 6 O -0.433 6.433 7 N -0.354 5.354 8 C 0.098 3.902 9 C -0.582 4.582 10 H 0.097 0.903 11 C -0.126 4.126 12 N -0.530 5.530 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.185 1.185 17 C -0.019 4.019 18 C -0.135 4.135 19 C -0.103 4.103 20 C -0.148 4.148 21 C -0.090 4.090 22 C -0.184 4.184 23 C 0.452 3.548 24 F -0.162 7.162 25 F -0.154 7.154 26 F -0.152 7.152 27 H 0.106 0.894 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.230 0.770 33 H 0.043 0.957 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.709 -3.407 -25.964 26.196 hybrid contribution -0.035 0.564 0.343 0.661 sum 0.674 -2.843 -25.621 25.787 Atomic orbital electron populations 1.21942 0.92701 1.01838 1.03823 1.20183 0.97785 0.99813 0.89497 0.89007 1.21711 1.02914 1.00095 0.92583 1.20403 0.80180 0.85942 0.84852 1.90622 1.41000 1.24950 1.86764 1.46195 1.55694 1.27394 1.06104 1.19489 0.95582 0.92561 0.82595 1.21100 1.37398 1.10608 0.89055 0.90271 1.24802 0.95066 0.97310 0.95462 1.69883 1.45484 1.39471 0.98162 0.86816 0.80620 0.83901 0.78357 1.19855 1.20898 1.18477 1.19796 0.93203 0.94254 0.94628 1.21083 1.00601 0.93539 0.98236 1.21405 0.95341 1.00130 0.93425 1.21133 0.99386 0.94060 1.00192 1.20996 0.97582 0.95103 0.95337 1.19904 1.06154 0.92377 0.99944 1.18300 0.74725 0.87659 0.74102 1.93143 1.74679 1.90553 1.57835 1.93233 1.48219 1.78006 1.95898 1.93248 1.79380 1.96688 1.45916 0.89367 0.92796 0.92945 0.88995 0.88887 0.77016 0.95714 0.96161 0.92265 0.84623 0.85055 0.84991 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.75 37.16 0.33 -1.56 16 2 C -0.05 -0.71 1.59 -91.77 -0.15 -0.85 16 3 H 0.09 1.41 4.53 -51.92 -0.24 1.17 16 4 C -0.13 -1.76 4.91 -27.88 -0.14 -1.90 16 5 C 0.50 9.27 7.55 -10.98 -0.08 9.19 16 6 O -0.55 -12.13 13.96 5.56 0.08 -12.05 16 7 N -0.71 -14.11 5.55 -61.47 -0.34 -14.45 16 8 C 0.22 5.40 4.50 -5.19 -0.02 5.38 16 9 C -0.54 -14.91 9.83 -34.44 -0.34 -15.25 16 10 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 11 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 12 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 13 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 17 C -0.02 -0.20 4.75 -104.63 -0.50 -0.70 16 18 C -0.12 -1.01 8.76 -39.58 -0.35 -1.35 16 19 C -0.09 -0.59 10.05 -39.58 -0.40 -0.99 16 20 C -0.13 -0.90 10.05 -39.58 -0.40 -1.30 16 21 C -0.07 -0.62 9.43 -39.58 -0.37 -0.99 16 22 C -0.18 -1.98 5.37 -104.62 -0.56 -2.54 16 23 C 0.51 6.22 2.78 36.01 0.10 6.32 16 24 F -0.18 -2.04 15.97 2.25 0.04 -2.01 16 25 F -0.17 -2.32 15.83 2.25 0.04 -2.28 16 26 F -0.17 -2.38 15.82 2.25 0.04 -2.35 16 27 H 0.09 1.39 5.95 -51.93 -0.31 1.08 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.56 7.39 -51.92 -0.38 0.18 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.09 0.99 7.57 -51.93 -0.39 0.60 16 32 H 0.40 6.95 8.32 -40.82 -0.34 6.61 16 33 H 0.02 0.65 7.20 -51.93 -0.37 0.27 16 34 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.14 0.98 7.16 -52.49 -0.38 0.61 16 37 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 38 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 39 H 0.14 0.96 7.16 -52.49 -0.38 0.58 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -32.23 334.51 -6.43 -38.66 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.45 Total: 2.79 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -2.97 Total: -4.45 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.43 Total: -40.21 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.08 Total: -12.05 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 0.11 Total: -6.64 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.23 -6.43 -38.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427628534.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.067 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds