Wall clock time and date at job start Tue Mar 31 2020 11:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 5 5 C 1.50701 * 109.47212 * 295.00231 * 4 2 1 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99566 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.46835 * 180.02562 * 8 7 5 10 10 H 1.07995 * 120.00280 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99788 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99711 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00219 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.46794 * 90.00022 * 13 11 9 15 15 H 1.48505 * 109.46876 * 210.00288 * 13 11 9 16 16 H 1.48501 * 109.46982 * 330.00118 * 13 11 9 17 17 C 1.50698 * 109.47043 * 240.00465 * 2 1 3 18 18 C 1.38254 * 119.99631 * 299.98943 * 17 2 1 19 19 C 1.38217 * 120.00137 * 180.02562 * 18 17 2 20 20 C 1.38264 * 119.99603 * 359.97438 * 19 18 17 21 21 C 1.38213 * 120.00296 * 359.97438 * 20 19 18 22 22 C 1.38214 * 120.00132 * 119.72998 * 17 2 1 23 23 C 1.50699 * 120.00189 * 359.97438 * 22 17 2 24 24 F 1.39890 * 109.47257 * 180.02562 * 23 22 17 25 25 F 1.39903 * 109.47093 * 300.00547 * 23 22 17 26 26 F 1.39899 * 109.46896 * 60.00328 * 23 22 17 27 27 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 28 28 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 29 29 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 175.00232 * 4 2 1 31 31 H 1.09001 * 109.46832 * 55.00423 * 4 2 1 32 32 H 0.96995 * 120.00011 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.47487 * 300.00114 * 8 7 5 34 34 H 1.09002 * 109.47182 * 60.00342 * 8 7 5 35 35 H 0.97009 * 119.99937 * 179.97438 * 12 11 9 36 36 H 1.08000 * 120.00403 * 359.97438 * 18 17 2 37 37 H 1.07997 * 120.00177 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.99826 * 179.97438 * 20 19 18 39 39 H 1.07989 * 120.00054 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 8 1.0109 1.0870 2.3632 7 7 1.9845 -0.3918 3.7002 8 6 1.5964 0.3645 4.8933 9 6 2.0989 -0.3458 6.1238 10 1 2.6523 -1.2681 6.0267 11 6 1.8520 0.1819 7.3734 12 7 2.2901 -0.4383 8.4473 13 14 0.8941 1.7768 7.5414 14 1 -0.5551 1.4740 7.6560 15 1 1.3465 2.5002 8.7569 16 1 1.1297 2.6240 6.3447 17 6 2.0323 -0.7103 -1.2305 18 6 1.6984 -2.0340 -1.4492 19 6 2.1595 -2.6857 -2.5775 20 6 2.9542 -2.0136 -3.4877 21 6 3.2871 -0.6901 -3.2696 22 6 2.8223 -0.0369 -2.1431 23 6 3.1809 1.4077 -1.9079 24 9 3.9807 1.8669 -2.9598 25 9 2.0120 2.1737 -1.8426 26 9 3.8825 1.5239 -0.7031 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 3.1264 -0.7993 1.2056 31 1 1.6054 -1.7197 1.2951 32 1 2.4884 -1.2156 3.7908 33 1 2.0309 1.3632 4.8478 34 1 0.5101 0.4426 4.9366 35 1 2.1168 -0.0669 9.3265 36 1 1.0780 -2.5591 -0.7380 37 1 1.8991 -3.7198 -2.7481 38 1 3.3149 -2.5230 -4.3691 39 1 3.9082 -0.1653 -3.9803 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427628534.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:33 Heat of formation + Delta-G solvation = -195.678554 kcal Electronic energy + Delta-G solvation = -26476.164852 eV Core-core repulsion = 22160.381516 eV Total energy + Delta-G solvation = -4315.783335 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.27899 -48.78325 -48.69162 -41.14865 -40.19923 -36.54503 -35.79490 -34.41208 -32.97307 -31.26328 -30.24796 -28.35003 -26.98732 -25.02084 -23.98198 -22.98842 -21.81360 -20.97290 -19.59531 -19.53890 -19.28864 -19.05069 -17.78747 -17.14168 -16.77936 -16.51823 -16.19606 -15.93393 -15.65247 -15.59772 -15.49154 -15.13720 -14.99109 -14.87317 -14.86741 -14.74784 -14.59800 -14.33449 -13.99185 -13.80942 -13.55853 -13.39265 -13.05319 -12.83456 -12.64109 -12.45454 -12.20347 -11.95229 -11.89939 -11.66139 -11.64220 -10.92480 -10.71142 -10.16197 -9.89965 -9.80513 -8.40931 -6.47555 -0.02426 0.30510 1.31223 1.33806 1.46406 1.64700 1.74947 2.26980 2.43894 2.58111 2.71910 2.94533 2.99716 3.35530 3.54818 3.64196 3.94209 4.05200 4.13945 4.20961 4.39679 4.42622 4.44906 4.63975 4.72909 4.73873 4.79531 4.93970 5.02909 5.03802 5.10523 5.25649 5.27610 5.37414 5.46306 5.47651 5.57889 5.87773 6.08573 6.53634 6.85819 7.15417 7.43670 8.73800 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.020911 B = 0.003203 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.683057 B = 8741.024157 C = 9293.618003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.052 4.052 3 H 0.062 0.938 4 C -0.120 4.120 5 C 0.499 3.501 6 O -0.589 6.589 7 N -0.707 5.707 8 C 0.232 3.768 9 C -0.546 4.546 10 H 0.060 0.940 11 C 0.027 3.973 12 N -0.931 5.931 13 Si 0.936 3.064 14 H -0.263 1.263 15 H -0.273 1.273 16 H -0.263 1.263 17 C -0.034 4.034 18 C -0.119 4.119 19 C -0.077 4.077 20 C -0.121 4.121 21 C -0.079 4.079 22 C -0.199 4.199 23 C 0.500 3.500 24 F -0.178 7.178 25 F -0.185 7.185 26 F -0.186 7.186 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.128 0.872 32 H 0.409 0.591 33 H 0.008 0.992 34 H 0.012 0.988 35 H 0.272 0.728 36 H 0.152 0.848 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.921 -6.013 -28.392 29.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.071 4.071 3 H 0.080 0.920 4 C -0.160 4.160 5 C 0.286 3.714 6 O -0.471 6.471 7 N -0.357 5.357 8 C 0.108 3.892 9 C -0.584 4.584 10 H 0.079 0.921 11 C -0.174 4.174 12 N -0.570 5.570 13 Si 0.760 3.240 14 H -0.188 1.188 15 H -0.198 1.198 16 H -0.188 1.188 17 C -0.035 4.035 18 C -0.136 4.136 19 C -0.095 4.095 20 C -0.139 4.139 21 C -0.096 4.096 22 C -0.200 4.200 23 C 0.446 3.554 24 F -0.159 7.159 25 F -0.166 7.166 26 F -0.167 7.167 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.125 0.875 31 H 0.146 0.854 32 H 0.245 0.755 33 H 0.026 0.974 34 H 0.030 0.970 35 H 0.082 0.918 36 H 0.170 0.830 37 H 0.182 0.818 38 H 0.181 0.819 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.501 -5.238 -28.235 28.721 hybrid contribution 0.080 1.075 0.945 1.434 sum 0.582 -4.163 -27.290 27.612 Atomic orbital electron populations 1.21867 0.92880 1.02933 1.02153 1.20045 0.97676 0.98652 0.90696 0.91969 1.21724 1.03988 1.00685 0.89590 1.21327 0.78828 0.85660 0.85537 1.90615 1.42428 1.26774 1.87294 1.46061 1.56355 1.27729 1.05537 1.19072 0.94717 0.91975 0.83467 1.21305 1.36759 1.10046 0.90279 0.92144 1.25588 0.96047 1.00438 0.95283 1.69980 1.46952 1.41212 0.98811 0.85876 0.79697 0.80071 0.78357 1.18822 1.19821 1.18783 1.19589 0.94647 0.95297 0.93917 1.21313 1.00581 0.92456 0.99291 1.21807 0.93997 1.01465 0.92228 1.21550 0.98215 0.93172 1.00961 1.21233 0.97644 0.96063 0.94709 1.19906 1.07527 0.91222 1.01339 1.18649 0.74262 0.88809 0.73640 1.93137 1.74562 1.90689 1.57497 1.93200 1.48922 1.78573 1.95946 1.93209 1.79703 1.96843 1.46992 0.92778 0.92625 0.90399 0.87514 0.85388 0.75541 0.97402 0.96988 0.91845 0.83023 0.81817 0.81883 0.83529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 8.75 71.98 0.63 -2.93 16 2 C -0.05 -1.32 1.59 -11.54 -0.02 -1.34 16 3 H 0.06 1.96 4.53 -2.38 -0.01 1.95 16 4 C -0.12 -3.00 4.91 29.85 0.15 -2.85 16 5 C 0.50 18.36 7.55 87.66 0.66 19.02 16 6 O -0.59 -26.40 13.96 -3.03 -0.04 -26.44 16 7 N -0.71 -28.18 5.55 -466.78 -2.59 -30.77 16 8 C 0.23 11.49 4.50 85.63 0.38 11.87 16 9 C -0.55 -30.32 9.83 25.60 0.25 -30.07 16 10 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16 11 C 0.03 1.52 5.47 84.66 0.46 1.99 16 12 N -0.93 -55.82 13.96 21.45 0.30 -55.52 16 13 Si 0.94 44.63 27.47 68.60 1.88 46.51 16 14 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 16 H -0.26 -12.59 6.54 99.48 0.65 -11.94 16 17 C -0.03 -0.68 4.75 -19.87 -0.09 -0.77 16 18 C -0.12 -1.61 8.76 22.27 0.20 -1.41 16 19 C -0.08 -0.71 10.05 22.27 0.22 -0.49 16 20 C -0.12 -1.17 10.05 22.27 0.22 -0.94 16 21 C -0.08 -1.15 9.43 22.27 0.21 -0.94 16 22 C -0.20 -4.07 5.37 -19.86 -0.11 -4.17 16 23 C 0.50 12.42 2.78 71.24 0.20 12.62 16 24 F -0.18 -4.00 15.97 44.97 0.72 -3.28 16 25 F -0.19 -5.18 15.83 44.97 0.71 -4.47 16 26 F -0.19 -5.34 15.82 44.97 0.71 -4.63 16 27 H 0.05 1.74 5.95 -2.39 -0.01 1.72 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.50 7.39 -2.38 -0.02 1.48 16 30 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.13 2.31 7.57 -2.39 -0.02 2.29 16 32 H 0.41 14.08 8.32 -92.71 -0.77 13.31 16 33 H 0.01 0.43 7.20 -2.39 -0.02 0.41 16 34 H 0.01 0.62 7.57 -2.39 -0.02 0.61 16 35 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 36 H 0.15 1.51 7.16 -2.91 -0.02 1.49 16 37 H 0.16 0.48 8.06 -2.91 -0.02 0.46 16 38 H 0.16 0.56 8.06 -2.91 -0.02 0.53 16 39 H 0.15 1.73 7.16 -2.92 -0.02 1.71 16 Total: -1.00 -71.86 334.51 5.34 -66.52 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.28 Total: 12.49 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 3.37 Total: -0.42 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -2.29 Total: -86.29 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.04 Total: -26.44 kcal Atomic # 9 Polarization: -14.51 SS G_CDS: 2.14 Total: -12.37 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.51 kcal Total: -71.86 5.34 -66.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427628534.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.161 kcal (2) G-P(sol) polarization free energy of solvation -71.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds