Wall clock time and date at job start Tue Mar 31 2020 10:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47268 * 2 1 4 4 H 1.08998 * 109.46838 * 305.70421 * 3 2 1 5 5 C 1.50699 * 109.46877 * 65.70580 * 3 2 1 6 6 O 1.21286 * 119.99994 * 34.42781 * 5 3 2 7 7 N 1.34771 * 119.99825 * 214.15429 * 5 3 2 8 8 C 1.46510 * 120.00053 * 175.35834 * 7 5 3 9 9 C 1.50698 * 109.46858 * 179.97438 * 8 7 5 10 10 H 1.07994 * 120.00664 * 359.97438 * 9 8 7 11 11 C 1.37883 * 119.99216 * 180.02562 * 9 8 7 12 12 N 1.31505 * 120.00344 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99375 * 179.97438 * 11 9 8 14 14 H 1.48491 * 109.47293 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.46796 * 119.99975 * 13 11 9 16 16 H 1.48499 * 109.46909 * 239.99543 * 13 11 9 17 17 C 1.50697 * 109.46947 * 185.70086 * 3 2 1 18 18 C 1.38254 * 120.00387 * 299.73127 * 17 3 2 19 19 C 1.38210 * 120.00001 * 179.76451 * 18 17 3 20 20 C 1.38263 * 119.99964 * 0.50996 * 19 18 17 21 21 C 1.38209 * 119.99778 * 359.74229 * 20 19 18 22 22 C 1.50707 * 119.99794 * 179.97438 * 21 20 19 23 23 F 1.39899 * 109.46807 * 270.01909 * 22 21 20 24 24 F 1.39897 * 109.47210 * 30.02118 * 22 21 20 25 25 F 1.39904 * 109.46972 * 150.02399 * 22 21 20 26 26 C 1.38220 * 119.99575 * 120.00346 * 17 3 2 27 27 H 1.09007 * 109.46665 * 294.78175 * 1 2 3 28 28 H 1.09000 * 109.47149 * 54.77951 * 1 2 3 29 29 H 1.09003 * 109.47192 * 174.77800 * 1 2 3 30 30 H 1.09004 * 109.46861 * 240.00140 * 2 1 3 31 31 H 1.09000 * 109.47236 * 120.00772 * 2 1 3 32 32 H 0.97000 * 120.00331 * 355.35197 * 7 5 3 33 33 H 1.09000 * 109.46767 * 299.99741 * 8 7 5 34 34 H 1.09004 * 109.46617 * 59.99692 * 8 7 5 35 35 H 0.97010 * 119.99902 * 180.02562 * 12 11 9 36 36 H 1.07998 * 119.99916 * 359.97438 * 18 17 3 37 37 H 1.08005 * 120.00306 * 180.22799 * 19 18 17 38 38 H 1.08000 * 119.99785 * 179.72790 * 20 19 18 39 39 H 1.07998 * 119.99803 * 359.97438 * 26 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5957 1.9849 -0.8345 5 6 1.6564 2.1109 1.2950 6 8 1.6280 1.4689 2.3236 7 7 1.3502 3.4233 1.3110 8 6 0.8792 4.0506 2.5485 9 6 0.6093 5.5121 2.2995 10 1 0.7726 5.9320 1.3180 11 6 0.1549 6.3136 3.3253 12 7 -0.0435 5.8026 4.5206 13 14 -0.1791 8.1255 3.0169 14 1 0.1214 8.4500 1.5994 15 1 -1.6064 8.4211 3.3011 16 1 0.6828 8.9459 3.9054 17 6 3.5404 1.4448 -0.1411 18 6 4.3251 0.8179 0.8090 19 6 5.7009 0.8159 0.6769 20 6 6.2930 1.4497 -0.3998 21 6 5.5087 2.0808 -1.3469 22 6 6.1541 2.7722 -2.5202 23 9 6.4169 4.1058 -2.1887 24 9 7.3530 2.1263 -2.8403 25 9 5.2914 2.7265 -3.6206 26 6 4.1323 2.0784 -1.2176 27 1 -0.3633 0.4308 0.9331 28 1 -0.3633 0.5927 -0.8395 29 1 -0.3634 -1.0234 -0.0935 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.4417 3.9526 0.5033 33 1 -0.0381 3.5621 2.8771 34 1 1.6419 3.9486 3.3205 35 1 -0.3636 6.3664 5.2422 36 1 3.8629 0.3270 1.6526 37 1 6.3138 0.3230 1.4172 38 1 7.3683 1.4519 -0.5007 39 1 3.5194 2.5715 -1.9576 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427638146.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:42 Heat of formation + Delta-G solvation = -185.652027 kcal Electronic energy + Delta-G solvation = -26134.322782 eV Core-core repulsion = 21818.974230 eV Total energy + Delta-G solvation = -4315.348552 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.29941 -47.83065 -47.74496 -40.24723 -38.61145 -34.95241 -34.14158 -32.35741 -32.03184 -31.33451 -27.98756 -26.51691 -26.15792 -23.17337 -22.51966 -22.25310 -21.21555 -19.56280 -18.62082 -18.51705 -18.28576 -17.09798 -16.42324 -15.94689 -15.38079 -15.22619 -15.05813 -14.63890 -14.50023 -14.36067 -14.29028 -14.19348 -13.99457 -13.92043 -13.75466 -13.36591 -13.18877 -12.79307 -12.65272 -12.44025 -12.07024 -11.99366 -11.75931 -11.50852 -11.17153 -11.02684 -10.93054 -10.89651 -10.75133 -10.33366 -9.44049 -9.40791 -9.32886 -8.77789 -8.75360 -7.93441 -6.19401 -4.26176 0.79367 1.05273 2.50572 3.17999 3.22172 3.29563 3.32465 3.36093 3.56343 3.86188 4.03634 4.28520 4.34633 4.54971 4.63474 4.86626 4.89754 5.07666 5.14541 5.17276 5.22118 5.34697 5.49611 5.62119 5.63076 5.71595 5.82011 5.95436 6.03032 6.14147 6.23640 6.38150 6.39333 6.59951 7.25745 7.37609 7.47380 7.63205 7.93685 8.56967 8.73823 9.02417 9.40597 10.90789 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.011633 B = 0.003846 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.447246 B = 7278.812358 C = 8668.230869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.101 4.101 3 C -0.072 4.072 4 H 0.095 0.905 5 C 0.509 3.491 6 O -0.551 6.551 7 N -0.708 5.708 8 C 0.250 3.750 9 C -0.543 4.543 10 H 0.063 0.937 11 C 0.064 3.936 12 N -0.885 5.885 13 Si 0.903 3.097 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.070 4.070 18 C -0.069 4.069 19 C -0.119 4.119 20 C -0.074 4.074 21 C -0.186 4.186 22 C 0.510 3.490 23 F -0.175 7.175 24 F -0.180 7.180 25 F -0.178 7.178 26 C -0.064 4.064 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.390 0.610 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.265 0.735 36 H 0.141 0.859 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.715 -10.687 -14.133 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.139 4.139 3 C -0.094 4.094 4 H 0.114 0.886 5 C 0.293 3.707 6 O -0.430 6.430 7 N -0.356 5.356 8 C 0.129 3.871 9 C -0.581 4.581 10 H 0.081 0.919 11 C -0.139 4.139 12 N -0.523 5.523 13 Si 0.730 3.270 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.070 4.070 18 C -0.087 4.087 19 C -0.137 4.137 20 C -0.092 4.092 21 C -0.187 4.187 22 C 0.456 3.544 23 F -0.157 7.157 24 F -0.161 7.161 25 F -0.159 7.159 26 C -0.082 4.082 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.223 0.777 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.159 0.841 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.611 -11.042 -13.213 20.226 hybrid contribution -0.030 1.544 -0.654 1.677 sum 10.581 -9.498 -13.867 19.861 Atomic orbital electron populations 1.21802 0.95161 1.01675 1.02577 1.21402 0.96443 0.93274 1.02776 1.20481 0.91578 0.99018 0.98334 0.88639 1.20120 0.78003 0.82998 0.89586 1.90643 1.53849 1.64392 1.34086 1.46517 1.64882 1.08368 1.15803 1.19124 0.94990 0.92031 0.80948 1.21256 1.46400 0.93415 0.97059 0.91854 1.24940 0.94991 0.99191 0.94802 1.69979 1.44701 1.36218 1.01385 0.86376 0.78012 0.84207 0.78431 1.19603 1.20766 1.20774 1.19509 0.94656 0.98190 0.94685 1.21481 0.93580 0.95757 0.97844 1.21161 0.94896 0.99879 0.97727 1.20926 1.00037 0.95230 0.93047 1.19862 0.95263 1.06236 0.97346 1.18309 0.76249 0.77085 0.82807 1.93244 1.94098 1.35926 1.92399 1.93175 1.47841 1.81451 1.93626 1.93187 1.69903 1.96297 1.56539 1.20830 0.92724 0.97011 0.97659 0.91839 0.92804 0.92529 0.91482 0.90362 0.77706 0.95527 0.95493 0.92493 0.84142 0.84685 0.84857 0.84552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.65 37.16 0.36 -1.54 16 2 C -0.10 -1.23 4.90 -26.73 -0.13 -1.36 16 3 C -0.07 -0.97 2.35 -92.92 -0.22 -1.19 16 4 H 0.10 1.10 7.87 -51.93 -0.41 0.69 16 5 C 0.51 9.50 5.63 -10.99 -0.06 9.43 16 6 O -0.55 -12.17 15.45 5.55 0.09 -12.08 16 7 N -0.71 -14.48 5.55 -61.47 -0.34 -14.82 16 8 C 0.25 6.48 5.43 -5.19 -0.03 6.45 16 9 C -0.54 -14.57 9.28 -34.44 -0.32 -14.89 16 10 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 13 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 C -0.07 -0.89 4.77 -104.62 -0.50 -1.39 16 18 C -0.07 -0.86 8.86 -39.59 -0.35 -1.21 16 19 C -0.12 -1.26 10.05 -39.58 -0.40 -1.65 16 20 C -0.07 -0.77 9.40 -39.58 -0.37 -1.15 16 21 C -0.19 -2.11 5.45 -104.62 -0.57 -2.68 16 22 C 0.51 5.70 3.36 36.01 0.12 5.82 16 23 F -0.18 -2.16 17.30 2.25 0.04 -2.12 16 24 F -0.18 -1.93 16.46 2.25 0.04 -1.90 16 25 F -0.18 -1.99 16.46 2.25 0.04 -1.96 16 26 C -0.06 -0.75 9.02 -39.58 -0.36 -1.10 16 27 H 0.06 0.96 7.42 -51.92 -0.39 0.58 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.03 7.12 -51.93 -0.37 0.66 16 32 H 0.39 6.96 8.32 -40.82 -0.34 6.62 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.14 1.86 7.18 -52.49 -0.38 1.48 16 37 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 38 H 0.13 1.12 7.60 -52.49 -0.40 0.72 16 39 H 0.14 1.37 7.49 -52.49 -0.39 0.98 16 LS Contribution 346.68 15.07 5.22 5.22 Total: -1.00 -30.88 346.68 -6.87 -37.74 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -4.74 Total: 4.05 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.92 Total: -4.79 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.40 Total: -39.92 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 0.11 Total: -5.98 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.88 -6.87 -37.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427638146.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.907 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds