Wall clock time and date at job start Tue Mar 31 2020 10:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47268 * 2 1 4 4 H 1.08998 * 109.46838 * 305.70421 * 3 2 1 5 5 C 1.50699 * 109.46877 * 65.70580 * 3 2 1 6 6 O 1.21286 * 119.99994 * 34.42781 * 5 3 2 7 7 N 1.34771 * 119.99825 * 214.15429 * 5 3 2 8 8 C 1.46510 * 120.00053 * 175.35834 * 7 5 3 9 9 C 1.50698 * 109.46858 * 179.97438 * 8 7 5 10 10 H 1.07994 * 120.00664 * 359.97438 * 9 8 7 11 11 C 1.37883 * 119.99216 * 180.02562 * 9 8 7 12 12 N 1.31505 * 120.00344 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99375 * 179.97438 * 11 9 8 14 14 H 1.48491 * 109.47293 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.46796 * 119.99975 * 13 11 9 16 16 H 1.48499 * 109.46909 * 239.99543 * 13 11 9 17 17 C 1.50697 * 109.46947 * 185.70086 * 3 2 1 18 18 C 1.38254 * 120.00387 * 299.73127 * 17 3 2 19 19 C 1.38210 * 120.00001 * 179.76451 * 18 17 3 20 20 C 1.38263 * 119.99964 * 0.50996 * 19 18 17 21 21 C 1.38209 * 119.99778 * 359.74229 * 20 19 18 22 22 C 1.50707 * 119.99794 * 179.97438 * 21 20 19 23 23 F 1.39899 * 109.46807 * 270.01909 * 22 21 20 24 24 F 1.39897 * 109.47210 * 30.02118 * 22 21 20 25 25 F 1.39904 * 109.46972 * 150.02399 * 22 21 20 26 26 C 1.38220 * 119.99575 * 120.00346 * 17 3 2 27 27 H 1.09007 * 109.46665 * 294.78175 * 1 2 3 28 28 H 1.09000 * 109.47149 * 54.77951 * 1 2 3 29 29 H 1.09003 * 109.47192 * 174.77800 * 1 2 3 30 30 H 1.09004 * 109.46861 * 240.00140 * 2 1 3 31 31 H 1.09000 * 109.47236 * 120.00772 * 2 1 3 32 32 H 0.97000 * 120.00331 * 355.35197 * 7 5 3 33 33 H 1.09000 * 109.46767 * 299.99741 * 8 7 5 34 34 H 1.09004 * 109.46617 * 59.99692 * 8 7 5 35 35 H 0.97010 * 119.99902 * 180.02562 * 12 11 9 36 36 H 1.07998 * 119.99916 * 359.97438 * 18 17 3 37 37 H 1.08005 * 120.00306 * 180.22799 * 19 18 17 38 38 H 1.08000 * 119.99785 * 179.72790 * 20 19 18 39 39 H 1.07998 * 119.99803 * 359.97438 * 26 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5957 1.9849 -0.8345 5 6 1.6564 2.1109 1.2950 6 8 1.6280 1.4689 2.3236 7 7 1.3502 3.4233 1.3110 8 6 0.8792 4.0506 2.5485 9 6 0.6093 5.5121 2.2995 10 1 0.7726 5.9320 1.3180 11 6 0.1549 6.3136 3.3253 12 7 -0.0435 5.8026 4.5206 13 14 -0.1791 8.1255 3.0169 14 1 0.1214 8.4500 1.5994 15 1 -1.6064 8.4211 3.3011 16 1 0.6828 8.9459 3.9054 17 6 3.5404 1.4448 -0.1411 18 6 4.3251 0.8179 0.8090 19 6 5.7009 0.8159 0.6769 20 6 6.2930 1.4497 -0.3998 21 6 5.5087 2.0808 -1.3469 22 6 6.1541 2.7722 -2.5202 23 9 6.4169 4.1058 -2.1887 24 9 7.3530 2.1263 -2.8403 25 9 5.2914 2.7265 -3.6206 26 6 4.1323 2.0784 -1.2176 27 1 -0.3633 0.4308 0.9331 28 1 -0.3633 0.5927 -0.8395 29 1 -0.3634 -1.0234 -0.0935 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.4417 3.9526 0.5033 33 1 -0.0381 3.5621 2.8771 34 1 1.6419 3.9486 3.3205 35 1 -0.3636 6.3664 5.2422 36 1 3.8629 0.3270 1.6526 37 1 6.3138 0.3230 1.4172 38 1 7.3683 1.4519 -0.5007 39 1 3.5194 2.5715 -1.9576 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427638146.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:42 Heat of formation + Delta-G solvation = -203.672899 kcal Electronic energy + Delta-G solvation = -26135.104226 eV Core-core repulsion = 21818.974230 eV Total energy + Delta-G solvation = -4316.129996 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.17068 -48.68193 -48.64095 -41.41937 -39.89171 -36.37225 -35.75823 -34.33689 -32.92422 -32.27052 -29.72556 -27.87760 -27.05864 -24.96474 -23.41803 -23.25003 -22.61934 -20.98532 -19.51137 -19.48722 -19.32238 -18.58622 -17.68922 -17.27446 -17.05240 -16.53128 -16.11027 -16.05116 -15.58483 -15.49000 -15.29899 -15.09781 -15.01179 -14.87383 -14.79493 -14.58846 -14.46490 -14.09203 -13.80429 -13.75865 -13.61380 -13.39822 -12.97790 -12.89377 -12.76135 -12.43022 -12.24463 -12.09145 -11.98093 -11.77721 -11.46510 -10.82437 -10.81887 -10.23246 -9.89054 -9.80111 -8.30122 -6.46167 -0.11147 0.17039 1.42534 1.43101 1.56574 1.61914 1.75238 2.28539 2.39776 2.62250 2.71808 3.00842 3.05181 3.41181 3.56205 3.75404 3.86738 3.94890 4.06239 4.18980 4.24935 4.35511 4.45979 4.62981 4.67972 4.83083 4.87014 5.05841 5.08178 5.12815 5.21147 5.24127 5.30964 5.36370 5.43941 5.49062 5.68757 5.71656 5.84820 6.64881 6.89754 7.22987 7.46865 8.82121 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.011633 B = 0.003846 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.447246 B = 7278.812358 C = 8668.230869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.098 4.098 3 C -0.058 4.058 4 H 0.123 0.877 5 C 0.508 3.492 6 O -0.590 6.590 7 N -0.708 5.708 8 C 0.268 3.732 9 C -0.555 4.555 10 H 0.082 0.918 11 C 0.006 3.994 12 N -0.930 5.930 13 Si 0.981 3.019 14 H -0.254 1.254 15 H -0.278 1.278 16 H -0.280 1.280 17 C -0.084 4.084 18 C -0.085 4.085 19 C -0.117 4.117 20 C -0.070 4.070 21 C -0.193 4.193 22 C 0.515 3.485 23 F -0.183 7.183 24 F -0.176 7.176 25 F -0.177 7.177 26 C -0.063 4.063 27 H 0.024 0.976 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.406 0.594 33 H -0.011 1.011 34 H -0.014 1.014 35 H 0.268 0.732 36 H 0.125 0.875 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.689 -10.061 -16.757 22.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.136 4.136 3 C -0.080 4.080 4 H 0.141 0.859 5 C 0.295 3.705 6 O -0.471 6.471 7 N -0.357 5.357 8 C 0.145 3.855 9 C -0.593 4.593 10 H 0.100 0.900 11 C -0.193 4.193 12 N -0.568 5.568 13 Si 0.804 3.196 14 H -0.178 1.178 15 H -0.203 1.203 16 H -0.205 1.205 17 C -0.084 4.084 18 C -0.103 4.103 19 C -0.134 4.134 20 C -0.088 4.088 21 C -0.194 4.194 22 C 0.461 3.539 23 F -0.164 7.164 24 F -0.157 7.157 25 F -0.158 7.158 26 C -0.081 4.081 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.241 0.759 33 H 0.007 0.993 34 H 0.004 0.996 35 H 0.077 0.923 36 H 0.142 0.858 37 H 0.176 0.824 38 H 0.174 0.826 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 11.601 -10.433 -15.887 22.267 hybrid contribution -0.271 1.251 0.184 1.293 sum 11.329 -9.182 -15.704 21.431 Atomic orbital electron populations 1.21803 0.95346 1.02864 1.01094 1.21429 0.96203 0.92435 1.03510 1.20436 0.92694 0.99422 0.95421 0.85908 1.21097 0.76157 0.82022 0.91222 1.90621 1.55000 1.65077 1.36409 1.46282 1.65430 1.09407 1.14551 1.18522 0.92115 0.92455 0.82367 1.21638 1.46095 0.93604 0.97935 0.90035 1.26010 0.94462 1.04522 0.94348 1.70133 1.45726 1.38355 1.02636 0.85165 0.77797 0.77528 0.79078 1.17773 1.20321 1.20534 1.19425 0.93870 0.99495 0.95624 1.21525 0.94741 0.96388 0.97678 1.21407 0.94221 0.99548 0.98268 1.21232 1.01225 0.94055 0.92279 1.19991 0.95364 1.06398 0.97668 1.18223 0.76312 0.76688 0.82724 1.93232 1.94163 1.36560 1.92476 1.93183 1.47652 1.81319 1.93593 1.93189 1.69892 1.96262 1.56502 1.20971 0.93148 0.96469 0.97534 0.95719 0.91186 0.90680 0.88228 0.92044 0.75907 0.99264 0.99632 0.92264 0.85751 0.82394 0.82602 0.82845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.65 71.98 0.69 -2.95 16 2 C -0.10 -2.26 4.90 30.60 0.15 -2.11 16 3 C -0.06 -1.51 2.35 -12.29 -0.03 -1.54 16 4 H 0.12 2.49 7.87 -2.39 -0.02 2.47 16 5 C 0.51 19.42 5.63 87.66 0.49 19.92 16 6 O -0.59 -27.54 15.45 -3.05 -0.05 -27.59 16 7 N -0.71 -29.52 5.55 -466.77 -2.59 -32.11 16 8 C 0.27 14.60 5.43 85.63 0.47 15.07 16 9 C -0.55 -30.10 9.28 25.60 0.24 -29.86 16 10 H 0.08 4.03 7.60 -2.91 -0.02 4.01 16 11 C 0.01 0.35 5.46 84.66 0.46 0.81 16 12 N -0.93 -55.85 13.29 21.45 0.28 -55.56 16 13 Si 0.98 42.32 29.54 68.60 2.03 44.35 16 14 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 15 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 16 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 17 C -0.08 -2.01 4.77 -19.87 -0.09 -2.10 16 18 C -0.09 -2.09 8.86 22.27 0.20 -1.89 16 19 C -0.12 -2.27 10.05 22.27 0.22 -2.04 16 20 C -0.07 -1.28 9.40 22.27 0.21 -1.07 16 21 C -0.19 -3.91 5.45 -19.87 -0.11 -4.02 16 22 C 0.51 10.24 3.36 71.24 0.24 10.48 16 23 F -0.18 -4.13 17.30 44.97 0.78 -3.35 16 24 F -0.18 -3.34 16.46 44.97 0.74 -2.60 16 25 F -0.18 -3.51 16.46 44.97 0.74 -2.77 16 26 C -0.06 -1.32 9.02 22.27 0.20 -1.12 16 27 H 0.02 0.76 7.42 -2.38 -0.02 0.74 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 30 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.64 7.12 -2.39 -0.02 1.62 16 32 H 0.41 14.21 8.32 -92.71 -0.77 13.44 16 33 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 34 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 35 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 36 H 0.12 3.42 7.18 -2.91 -0.02 3.40 16 37 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.16 2.11 7.60 -2.91 -0.02 2.09 16 39 H 0.15 2.59 7.49 -2.91 -0.02 2.57 16 Total: -1.00 -69.59 346.68 5.59 -64.00 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.32 Total: 18.08 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 3.34 Total: -2.44 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -2.30 Total: -87.67 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.05 Total: -27.59 kcal Atomic # 9 Polarization: -10.98 SS G_CDS: 2.26 Total: -8.72 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -69.59 5.59 -64.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427638146.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.676 kcal (2) G-P(sol) polarization free energy of solvation -69.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds