Wall clock time and date at job start Tue Mar 31 2020 11:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 O 1.21287 * 119.99375 * 359.97438 * 5 4 2 7 7 N 1.34768 * 120.00550 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99870 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.46901 * 179.97438 * 8 7 5 10 10 H 1.08005 * 120.00082 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00188 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99772 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00342 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47135 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47204 * 119.99917 * 13 11 9 16 16 H 1.48502 * 109.47317 * 240.00326 * 13 11 9 17 17 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 18 18 C 1.38266 * 119.99734 * 299.73048 * 17 2 1 19 19 C 1.38214 * 119.99611 * 179.76677 * 18 17 2 20 20 C 1.38255 * 120.00035 * 0.50066 * 19 18 17 21 21 C 1.38217 * 119.99877 * 359.75423 * 20 19 18 22 22 C 1.50709 * 119.99734 * 179.97438 * 21 20 19 23 23 F 1.39897 * 109.46767 * 270.01687 * 22 21 20 24 24 F 1.39901 * 109.46957 * 30.01834 * 22 21 20 25 25 F 1.39899 * 109.46795 * 150.02077 * 22 21 20 26 26 C 1.38212 * 120.00159 * 120.00088 * 17 2 1 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 31 31 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 32 32 H 0.97005 * 120.00103 * 359.97438 * 7 5 4 33 33 H 1.09000 * 109.47148 * 299.99056 * 8 7 5 34 34 H 1.08998 * 109.47345 * 59.99868 * 8 7 5 35 35 H 0.97005 * 120.00287 * 179.97438 * 12 11 9 36 36 H 1.07997 * 120.00062 * 359.97438 * 18 17 2 37 37 H 1.08004 * 119.99999 * 180.22939 * 19 18 17 38 38 H 1.08000 * 120.00277 * 179.72213 * 20 19 18 39 39 H 1.08004 * 119.99583 * 0.02562 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 8 1.0117 1.0874 2.3632 7 7 1.9852 -0.3914 3.7001 8 6 1.5971 0.3650 4.8933 9 6 2.0995 -0.3454 6.1238 10 1 2.6522 -1.2682 6.0268 11 6 1.8535 0.1827 7.3734 12 7 1.1800 1.3062 7.4915 13 14 2.4756 -0.6981 8.8987 14 1 3.1986 -1.9316 8.4976 15 1 3.3979 0.1952 9.6446 16 1 1.3253 -1.0579 9.7663 17 6 2.0324 -0.7104 -1.2304 18 6 1.7030 -2.0358 -1.4464 19 6 2.1598 -2.6859 -2.5773 20 6 2.9547 -2.0140 -3.4873 21 6 3.2883 -0.6906 -3.2688 22 6 4.1552 0.0416 -4.2605 23 9 5.5000 -0.1126 -3.9074 24 9 3.9457 -0.4838 -5.5401 25 9 3.8244 1.4009 -4.2546 26 6 2.8271 -0.0388 -2.1402 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6053 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2056 32 1 2.4891 -1.2153 3.7908 33 1 2.0311 1.3638 4.8474 34 1 0.5107 0.4424 4.9370 35 1 1.0066 1.6776 8.3707 36 1 1.0861 -2.5620 -0.7331 37 1 1.8995 -3.7201 -2.7479 38 1 3.3153 -2.5233 -4.3688 39 1 3.0883 0.9951 -1.9690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427650541.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:38 Heat of formation + Delta-G solvation = -203.871837 kcal Electronic energy + Delta-G solvation = -25293.351066 eV Core-core repulsion = 20977.212443 eV Total energy + Delta-G solvation = -4316.138623 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.19661 -48.71776 -48.66719 -41.09086 -40.15699 -36.54684 -35.81571 -34.33085 -32.75287 -31.29517 -29.87850 -28.13140 -27.04660 -25.06320 -24.06537 -23.35106 -21.71309 -20.94924 -19.52825 -19.40969 -18.90512 -18.83578 -17.58521 -17.18214 -17.02819 -16.64262 -16.20444 -15.87973 -15.63527 -15.52747 -15.32924 -15.12561 -14.91761 -14.83128 -14.67496 -14.62931 -14.50309 -14.09472 -13.88847 -13.74682 -13.58426 -13.39137 -12.90647 -12.82581 -12.67942 -12.40582 -12.22442 -12.12425 -11.90139 -11.67308 -11.44427 -10.80831 -10.61400 -10.15352 -9.83272 -9.76592 -8.29023 -6.45231 -0.03415 0.27888 1.43543 1.44338 1.57791 1.64176 1.83843 2.32914 2.48541 2.64821 2.72479 3.00446 3.06174 3.39768 3.63973 3.78488 3.92374 4.07980 4.14576 4.23075 4.30764 4.44047 4.51820 4.68850 4.72546 4.85887 4.92945 5.02754 5.14442 5.20094 5.21188 5.26507 5.34091 5.45131 5.53475 5.57740 5.73829 5.83574 5.87214 6.67034 6.96392 7.24718 7.56108 8.83352 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.024737 B = 0.002293 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.646300 B =12208.696645 C =12307.217291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.031 4.031 3 H 0.067 0.933 4 C -0.120 4.120 5 C 0.493 3.507 6 O -0.596 6.596 7 N -0.711 5.711 8 C 0.266 3.734 9 C -0.554 4.554 10 H 0.084 0.916 11 C 0.002 3.998 12 N -0.932 5.932 13 Si 0.983 3.017 14 H -0.252 1.252 15 H -0.280 1.280 16 H -0.279 1.279 17 C -0.076 4.076 18 C -0.080 4.080 19 C -0.110 4.110 20 C -0.079 4.079 21 C -0.193 4.193 22 C 0.509 3.491 23 F -0.182 7.182 24 F -0.177 7.177 25 F -0.184 7.184 26 C -0.081 4.081 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.124 0.876 31 H 0.111 0.889 32 H 0.408 0.592 33 H -0.015 1.015 34 H -0.013 1.013 35 H 0.268 0.732 36 H 0.153 0.847 37 H 0.166 0.834 38 H 0.151 0.849 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.643 -11.727 -24.554 27.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.050 4.050 3 H 0.085 0.915 4 C -0.160 4.160 5 C 0.281 3.719 6 O -0.478 6.478 7 N -0.360 5.360 8 C 0.143 3.857 9 C -0.592 4.592 10 H 0.102 0.898 11 C -0.197 4.197 12 N -0.571 5.571 13 Si 0.807 3.193 14 H -0.175 1.175 15 H -0.206 1.206 16 H -0.205 1.205 17 C -0.076 4.076 18 C -0.097 4.097 19 C -0.128 4.128 20 C -0.096 4.096 21 C -0.194 4.194 22 C 0.455 3.545 23 F -0.164 7.164 24 F -0.159 7.159 25 F -0.166 7.166 26 C -0.099 4.099 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.142 0.858 31 H 0.130 0.870 32 H 0.244 0.756 33 H 0.003 0.997 34 H 0.005 0.995 35 H 0.077 0.923 36 H 0.171 0.829 37 H 0.184 0.816 38 H 0.169 0.831 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.164 -10.857 -24.524 27.141 hybrid contribution 0.475 0.416 0.878 1.081 sum 4.639 -10.441 -23.646 26.262 Atomic orbital electron populations 1.21904 0.93746 1.02643 1.01966 1.19769 0.96688 0.98549 0.90027 0.91461 1.21765 1.04172 1.00460 0.89553 1.21495 0.78856 0.85718 0.85809 1.90623 1.42616 1.27150 1.87388 1.46245 1.56192 1.27655 1.05958 1.18511 0.93479 0.90939 0.82799 1.21668 1.36724 1.09807 0.90960 0.89801 1.26065 0.94839 0.95611 1.03199 1.70144 1.40604 1.21059 1.25268 0.85128 0.77987 0.78697 0.77514 1.17539 1.20616 1.20467 1.19757 0.97446 0.94987 0.95460 1.21582 0.97334 0.93170 0.97655 1.21498 0.96593 1.01665 0.93035 1.21228 0.96353 0.91746 1.00321 1.19960 1.04813 0.97222 0.97449 1.18424 0.78743 0.77004 0.80347 1.93217 1.35917 1.95399 1.91850 1.93180 1.94734 1.86270 1.41678 1.93185 1.92361 1.34489 1.96534 1.20919 0.96089 1.00351 0.92575 0.90894 0.93324 0.92385 0.85838 0.87033 0.75622 0.99726 0.99457 0.92307 0.82922 0.81636 0.83145 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.75 71.98 0.63 -2.89 16 2 C -0.03 -0.72 2.21 -11.54 -0.03 -0.75 16 3 H 0.07 1.85 7.69 -2.39 -0.02 1.83 16 4 C -0.12 -2.78 4.91 29.85 0.15 -2.63 16 5 C 0.49 18.33 7.55 87.66 0.66 19.00 16 6 O -0.60 -27.76 13.97 -3.05 -0.04 -27.80 16 7 N -0.71 -28.74 5.55 -466.78 -2.59 -31.33 16 8 C 0.27 14.36 5.43 85.63 0.46 14.83 16 9 C -0.55 -29.71 9.28 25.60 0.24 -29.47 16 10 H 0.08 4.05 7.60 -2.91 -0.02 4.03 16 11 C 0.00 0.12 5.46 84.65 0.46 0.59 16 12 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 13 Si 0.98 41.90 29.54 68.60 2.03 43.93 16 14 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 15 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 17 C -0.08 -1.38 4.78 -19.86 -0.09 -1.48 16 18 C -0.08 -1.04 8.76 22.27 0.20 -0.85 16 19 C -0.11 -1.16 10.05 22.27 0.22 -0.94 16 20 C -0.08 -1.03 9.40 22.27 0.21 -0.82 16 21 C -0.19 -3.40 5.45 -19.86 -0.11 -3.50 16 22 C 0.51 9.60 3.36 71.24 0.24 9.84 16 23 F -0.18 -3.70 17.30 44.97 0.78 -2.92 16 24 F -0.18 -3.18 16.46 44.97 0.74 -2.44 16 25 F -0.18 -3.89 16.46 44.97 0.74 -3.15 16 26 C -0.08 -1.57 9.02 22.27 0.20 -1.36 16 27 H 0.07 1.39 7.40 -2.39 -0.02 1.37 16 28 H 0.05 1.57 5.95 -2.39 -0.01 1.56 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.12 2.08 7.56 -2.39 -0.02 2.06 16 31 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.41 13.41 8.32 -92.70 -0.77 12.64 16 33 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 34 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 35 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 36 H 0.15 1.40 7.17 -2.91 -0.02 1.38 16 37 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 38 H 0.15 1.40 7.60 -2.91 -0.02 1.38 16 39 H 0.13 2.55 7.49 -2.91 -0.02 2.53 16 Total: -1.00 -71.43 344.01 5.70 -65.73 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.32 Total: 14.18 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 3.44 Total: -0.45 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -2.30 Total: -87.07 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.04 Total: -27.80 kcal Atomic # 9 Polarization: -10.77 SS G_CDS: 2.26 Total: -8.51 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -71.43 5.70 -65.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427650541.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.144 kcal (2) G-P(sol) polarization free energy of solvation -71.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds