Wall clock time and date at job start Tue Mar 31 2020 11:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40059 * 125.94552 * 2 1 4 4 C 1.31864 * 108.22723 * 180.02562 * 3 2 1 5 5 C 1.47725 * 125.97745 * 179.97438 * 4 3 2 6 6 O 1.21572 * 119.99642 * 174.87556 * 5 4 3 7 7 N 1.34768 * 120.00376 * 354.87712 * 5 4 3 8 8 C 1.46496 * 120.00224 * 184.35741 * 7 5 4 9 9 C 1.53004 * 109.47172 * 185.07553 * 8 7 5 10 10 C 1.50696 * 115.54979 * 65.10152 * 9 8 7 11 11 H 1.08005 * 119.99612 * 269.85797 * 10 9 8 12 12 C 1.37869 * 120.00375 * 89.85895 * 10 9 8 13 13 N 1.31515 * 120.00135 * 180.97749 * 12 10 9 14 14 Si 1.86801 * 119.99920 * 0.97482 * 12 10 9 15 15 H 1.48508 * 109.47022 * 92.66650 * 14 12 10 16 16 H 1.48495 * 109.47116 * 212.66167 * 14 12 10 17 17 H 1.48494 * 109.47196 * 332.66547 * 14 12 10 18 18 C 1.53002 * 117.49926 * 279.42366 * 9 8 7 19 19 C 1.53004 * 117.49703 * 210.76896 * 9 8 7 20 20 C 1.41061 * 108.03855 * 359.74867 * 4 3 2 21 21 C 1.35589 * 107.79443 * 0.41892 * 20 4 3 22 22 O 1.35777 * 126.08194 * 179.84764 * 21 20 4 23 23 C 1.42901 * 116.99647 * 354.84890 * 22 21 20 24 24 F 1.39896 * 109.47312 * 304.06272 * 23 22 21 25 25 F 1.39902 * 109.47078 * 64.06651 * 23 22 21 26 26 H 1.09007 * 109.46887 * 274.85617 * 1 2 3 27 27 H 1.08995 * 109.47765 * 34.85677 * 1 2 3 28 28 H 1.08997 * 109.47022 * 154.86261 * 1 2 3 29 29 H 0.97002 * 119.99877 * 4.36421 * 7 5 4 30 30 H 1.08996 * 109.47600 * 305.08110 * 8 7 5 31 31 H 1.09007 * 109.47007 * 65.07801 * 8 7 5 32 32 H 0.97000 * 120.00153 * 179.97438 * 13 12 10 33 33 H 1.09002 * 117.50193 * 0.02562 * 18 9 8 34 34 H 1.09003 * 117.49633 * 145.01890 * 18 9 8 35 35 H 1.08998 * 117.49753 * 214.98272 * 19 9 8 36 36 H 1.09004 * 117.49721 * 359.97428 * 19 9 8 37 37 H 1.07998 * 126.10213 * 180.26414 * 20 4 3 38 38 H 1.09001 * 109.46916 * 184.05970 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2872 1.1339 0.0000 4 6 3.5433 0.7326 -0.0006 5 6 4.7338 1.6072 -0.0013 6 8 5.8445 1.1220 0.0923 7 7 4.5886 2.9430 -0.1057 8 6 5.7706 3.8030 -0.2025 9 6 5.3369 5.2701 -0.1827 10 6 4.6984 5.7418 1.0982 11 1 3.6285 5.6689 1.2269 12 6 5.4798 6.2665 2.1056 13 7 4.9247 6.6604 3.2309 14 14 7.3269 6.4179 1.8722 15 1 7.6495 7.7649 1.3364 16 1 8.0080 6.2286 3.1781 17 1 7.7918 5.3807 0.9165 18 6 4.8233 5.8727 -1.4919 19 6 6.1992 6.2721 -0.9530 20 6 3.5512 -0.6780 0.0050 21 6 2.2625 -1.0996 -0.0007 22 8 1.8437 -2.3912 -0.0009 23 6 2.8504 -3.3995 -0.1091 24 9 3.6118 -3.1767 -1.2614 25 9 3.6814 -3.3514 1.0155 26 1 -0.3633 0.0870 1.0241 27 1 -0.3634 0.8432 -0.5873 28 1 -0.3633 -0.9303 -0.4365 29 1 3.7014 3.3350 -0.1165 30 1 6.4319 3.6081 0.6416 31 1 6.2977 3.5925 -1.1332 32 1 5.4745 7.0292 3.9398 33 1 4.7940 5.2239 -2.3673 34 1 4.0237 6.6107 -1.4267 35 1 6.3043 7.2726 -0.5335 36 1 7.0757 5.8861 -1.4736 37 1 4.4273 -1.3094 0.0100 38 1 2.3777 -4.3798 -0.1697 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431097209.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:58 Heat of formation + Delta-G solvation = -92.403619 kcal Electronic energy + Delta-G solvation = -26163.849653 eV Core-core repulsion = 21872.464617 eV Total energy + Delta-G solvation = -4291.385036 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.27044 -48.35472 -42.69591 -40.61174 -39.29706 -38.69872 -35.18972 -34.43494 -34.19205 -31.00475 -29.09747 -28.04916 -27.42093 -26.71701 -24.07952 -23.34358 -22.49006 -21.35996 -20.99320 -19.90553 -19.10211 -18.99351 -18.42198 -17.73386 -17.45778 -17.20165 -16.93967 -16.61631 -16.12596 -15.99611 -15.47434 -15.21317 -15.15835 -14.80877 -14.74542 -14.64356 -14.53435 -14.35443 -13.86449 -13.78070 -13.47674 -13.34383 -13.12203 -13.08359 -12.71672 -12.24297 -12.16883 -11.97166 -11.61657 -11.39030 -10.99749 -10.64133 -10.46564 -10.36059 -9.97878 -9.82525 -8.29135 -6.36220 0.11230 0.48444 0.84782 1.34565 1.41240 1.52184 1.72304 2.15991 2.20185 2.37789 2.54791 3.05322 3.08122 3.26101 3.44126 3.60689 3.78775 4.00004 4.07105 4.22203 4.35625 4.38772 4.40400 4.41754 4.50023 4.66452 4.77487 4.86376 4.87406 5.05847 5.09987 5.28818 5.41081 5.50416 5.69617 5.76198 6.10864 6.28592 6.55744 6.72619 7.06751 7.34324 8.85861 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.019986 B = 0.003268 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.615392 B = 8566.012494 C = 8843.102497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.345 5.345 3 N -0.249 5.249 4 C 0.042 3.958 5 C 0.589 3.411 6 O -0.569 6.569 7 N -0.683 5.683 8 C 0.162 3.838 9 C -0.043 4.043 10 C -0.480 4.480 11 H 0.040 0.960 12 C 0.023 3.977 13 N -0.946 5.946 14 Si 0.934 3.066 15 H -0.265 1.265 16 H -0.304 1.304 17 H -0.236 1.236 18 C -0.153 4.153 19 C -0.187 4.187 20 C -0.285 4.285 21 C 0.271 3.729 22 O -0.305 6.305 23 C 0.419 3.581 24 F -0.206 7.206 25 F -0.208 7.208 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.122 0.878 29 H 0.413 0.587 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.264 0.736 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.157 0.843 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.760 -21.539 -10.766 25.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.138 5.138 3 N -0.081 5.081 4 C -0.124 4.124 5 C 0.373 3.627 6 O -0.447 6.447 7 N -0.332 5.332 8 C 0.038 3.962 9 C -0.044 4.044 10 C -0.518 4.518 11 H 0.059 0.941 12 C -0.175 4.175 13 N -0.586 5.586 14 Si 0.759 3.241 15 H -0.190 1.190 16 H -0.232 1.232 17 H -0.159 1.159 18 C -0.190 4.190 19 C -0.224 4.224 20 C -0.315 4.315 21 C 0.102 3.898 22 O -0.218 6.218 23 C 0.330 3.670 24 F -0.188 7.188 25 F -0.190 7.190 26 H 0.112 0.888 27 H 0.125 0.875 28 H 0.141 0.859 29 H 0.249 0.751 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.175 0.825 38 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -9.983 -20.919 -10.543 25.464 hybrid contribution 1.191 0.049 0.728 1.396 sum -8.793 -20.870 -9.815 24.682 Atomic orbital electron populations 1.22493 0.69977 1.07023 1.05675 1.49018 1.08422 0.99903 1.56456 1.77856 1.00477 1.05744 1.24009 1.21685 0.92063 0.94277 1.04337 1.17197 0.86602 0.82073 0.76817 1.90735 1.26090 1.75607 1.52296 1.45732 1.11655 1.04890 1.70883 1.21054 0.86274 0.88908 0.99938 1.19441 1.02502 0.89932 0.92572 1.20357 0.93665 1.39690 0.98093 0.94143 1.25782 1.03047 0.94295 0.94378 1.70030 1.37813 1.44052 1.06700 0.85968 0.80628 0.80257 0.77248 1.19004 1.23222 1.15935 1.22913 0.96299 1.03308 0.96516 1.23024 0.95180 0.99617 1.04622 1.21144 0.96118 0.94122 1.20133 1.18514 0.88872 0.82103 1.00345 1.86396 1.37054 1.09995 1.88345 1.24700 0.77952 0.93344 0.70995 1.93123 1.78510 1.95577 1.51589 1.93127 1.74929 1.96766 1.54200 0.88795 0.87515 0.85932 0.75108 0.93876 0.91291 0.92687 0.87731 0.89629 0.90181 0.87812 0.82513 0.72578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.14 11.44 127.77 1.46 2.60 16 2 N -0.35 -8.50 4.03 -480.57 -1.94 -10.44 16 3 N -0.25 -8.14 12.27 -48.42 -0.59 -8.73 16 4 C 0.04 1.52 7.09 42.34 0.30 1.82 16 5 C 0.59 24.45 7.82 86.75 0.68 25.13 16 6 O -0.57 -26.45 16.88 -3.94 -0.07 -26.52 16 7 N -0.68 -28.03 5.45 -466.09 -2.54 -30.57 16 8 C 0.16 6.91 5.22 86.38 0.45 7.36 16 9 C -0.04 -1.91 0.82 -52.93 -0.04 -1.95 16 10 C -0.48 -26.46 9.33 25.60 0.24 -26.22 16 11 H 0.04 2.47 8.06 -2.91 -0.02 2.45 16 12 C 0.02 1.31 5.47 84.65 0.46 1.78 16 13 N -0.95 -59.16 13.96 21.44 0.30 -58.86 16 14 Si 0.93 44.94 24.74 68.60 1.70 46.64 16 15 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 16 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 17 H -0.24 -10.54 5.94 99.48 0.59 -9.94 16 18 C -0.15 -5.59 9.96 30.62 0.30 -5.28 16 19 C -0.19 -7.22 7.28 30.62 0.22 -7.00 16 20 C -0.28 -8.93 8.80 22.35 0.20 -8.73 16 21 C 0.27 6.72 7.46 83.46 0.62 7.34 16 22 O -0.31 -4.89 10.36 -91.05 -0.94 -5.84 16 23 C 0.42 4.68 5.99 113.37 0.68 5.36 16 24 F -0.21 -3.53 15.99 44.97 0.72 -2.81 16 25 F -0.21 -3.75 16.22 44.97 0.73 -3.02 16 26 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.12 0.86 8.04 -2.39 -0.02 0.84 16 29 H 0.41 16.48 8.16 -92.71 -0.76 15.72 16 30 H 0.04 2.06 7.31 -2.39 -0.02 2.04 16 31 H 0.07 2.64 8.09 -2.38 -0.02 2.62 16 32 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 35 H 0.08 3.28 6.82 -2.39 -0.02 3.26 16 36 H 0.10 3.46 8.14 -2.38 -0.02 3.44 16 37 H 0.16 4.98 6.64 -2.91 -0.02 4.96 16 38 H 0.26 -0.77 8.14 -2.39 -0.02 -0.79 16 Total: -1.00 -78.77 337.00 3.18 -75.58 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.25 Total: 22.38 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 5.58 Total: 2.19 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -4.78 Total: -108.61 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -1.01 Total: -32.36 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 1.45 Total: -5.83 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.70 Total: 46.64 kcal Total: -78.77 3.18 -75.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431097209.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.819 kcal (2) G-P(sol) polarization free energy of solvation -78.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds