Wall clock time and date at job start Tue Mar 31 2020 11:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46979 * 2 1 4 4 C 1.50695 * 109.47393 * 120.00625 * 2 1 3 5 5 O 1.21276 * 120.00241 * 119.99865 * 4 2 1 6 6 N 1.34777 * 119.99779 * 299.99814 * 4 2 1 7 7 C 1.46494 * 120.00188 * 180.02562 * 6 4 2 8 8 H 1.09000 * 109.47081 * 325.00162 * 7 6 4 9 9 C 1.53001 * 109.47302 * 205.00083 * 7 6 4 10 10 C 1.50701 * 109.47232 * 64.99671 * 9 7 6 11 11 H 1.08001 * 119.99717 * 0.02562 * 10 9 7 12 12 C 1.37876 * 119.99813 * 179.97438 * 10 9 7 13 13 N 1.31510 * 120.00272 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99744 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46889 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47032 * 120.00156 * 14 12 10 17 17 H 1.48500 * 109.46727 * 240.00432 * 14 12 10 18 18 C 1.50703 * 109.47581 * 84.99858 * 7 6 4 19 19 C 1.38235 * 120.00292 * 220.00303 * 18 7 6 20 20 C 1.38230 * 119.99899 * 179.97438 * 19 18 7 21 21 C 1.38235 * 120.00326 * 359.95697 * 20 19 18 22 22 C 1.38234 * 119.99814 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99503 * 39.97596 * 18 7 6 24 24 C 1.53001 * 109.46962 * 240.00600 * 2 1 3 25 25 F 1.39898 * 109.47009 * 299.99974 * 24 2 1 26 26 F 1.39903 * 109.47265 * 59.99721 * 24 2 1 27 27 F 1.39895 * 109.47195 * 179.97438 * 24 2 1 28 28 H 1.09001 * 109.47495 * 59.99414 * 1 2 3 29 29 H 1.08995 * 109.47049 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46940 * 299.99970 * 1 2 3 31 31 H 0.97005 * 119.99889 * 359.97438 * 6 4 2 32 32 H 1.09007 * 109.47213 * 184.99910 * 9 7 6 33 33 H 1.08998 * 109.47120 * 304.99384 * 9 7 6 34 34 H 0.97001 * 120.00530 * 179.97438 * 13 12 10 35 35 H 1.08001 * 119.99730 * 359.97438 * 19 18 7 36 36 H 1.08000 * 120.00376 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.00616 * 179.72578 * 21 20 19 38 38 H 1.08001 * 120.00299 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.00455 * 0.02562 * 23 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7296 -1.6965 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9404 3.6506 8 1 2.2327 -2.0132 3.4612 9 6 1.2517 -0.6616 4.8219 10 6 -0.0978 -1.2681 4.5350 11 1 -0.2652 -1.7996 3.6099 12 6 -1.1182 -1.1452 5.4541 13 7 -0.9141 -0.4984 6.5808 14 14 -2.7907 -1.8976 5.0987 15 1 -2.7608 -2.5671 3.7735 16 1 -3.1182 -2.8947 6.1492 17 1 -3.8224 -0.8295 5.0911 18 6 3.5770 -0.4421 3.9890 19 6 4.5446 -1.3288 4.4230 20 6 5.8118 -0.8717 4.7329 21 6 6.1117 0.4719 4.6081 22 6 5.1445 1.3584 4.1728 23 6 3.8766 0.9017 3.8650 24 6 2.0400 -0.7211 -1.2493 25 9 1.5736 -2.0401 -1.2494 26 9 1.5736 -0.0616 -2.3916 27 9 3.4389 -0.7207 -1.2497 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.1494 0.5388 2.5435 32 1 1.6616 -1.1009 5.7315 33 1 1.1454 0.4151 4.9546 34 1 -1.6321 -0.4116 7.2272 35 1 4.3105 -2.3787 4.5198 36 1 6.5678 -1.5644 5.0723 37 1 7.1005 0.8298 4.8544 38 1 5.3786 2.4082 4.0756 39 1 3.1206 1.5945 3.5260 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439675437.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:29 Heat of formation + Delta-G solvation = -181.892753 kcal Electronic energy + Delta-G solvation = -27001.963677 eV Core-core repulsion = 22686.778139 eV Total energy + Delta-G solvation = -4315.185538 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.99186 -47.52272 -47.37985 -39.88983 -38.58334 -35.36178 -34.07023 -32.76033 -30.98243 -30.48287 -28.84280 -26.41099 -25.19025 -23.36001 -22.34563 -22.00356 -20.47509 -19.83235 -18.61275 -18.33971 -17.54056 -16.79543 -16.43020 -16.21090 -15.56065 -15.02383 -14.73685 -14.56846 -14.41609 -14.12415 -14.03837 -13.83351 -13.62401 -13.55177 -13.39907 -13.16793 -13.05330 -12.82672 -12.58988 -12.34255 -12.16180 -11.96045 -11.67954 -11.37599 -11.19161 -10.99132 -10.79518 -10.64650 -10.53627 -9.86156 -9.63630 -9.34603 -8.64268 -8.54719 -8.52003 -8.24159 -6.15490 -4.19538 1.72666 1.76091 2.66808 2.79948 3.21538 3.31024 3.34506 3.35669 3.74583 4.09853 4.14845 4.32438 4.35216 4.83144 4.86969 4.96997 5.21511 5.22477 5.22846 5.32946 5.45705 5.48991 5.56943 5.85378 5.88868 5.98847 6.08924 6.29522 6.37461 6.50153 6.72904 6.79782 6.81686 7.03411 7.35683 7.41561 7.52055 7.80705 7.87522 8.18186 8.48290 8.86766 9.46194 10.94930 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.008508 B = 0.006220 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.055023 B = 4500.528127 C = 7130.462667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.163 4.163 3 H 0.135 0.865 4 C 0.519 3.481 5 O -0.530 6.530 6 N -0.690 5.690 7 C 0.185 3.815 8 H 0.089 0.911 9 C 0.024 3.976 10 C -0.522 4.522 11 H 0.059 0.941 12 C 0.061 3.939 13 N -0.891 5.891 14 Si 0.890 3.110 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.284 1.284 18 C -0.074 4.074 19 C -0.107 4.107 20 C -0.122 4.122 21 C -0.134 4.134 22 C -0.125 4.125 23 C -0.109 4.109 24 C 0.473 3.527 25 F -0.171 7.171 26 F -0.186 7.186 27 F -0.175 7.175 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.403 0.597 32 H 0.036 0.964 33 H 0.025 0.975 34 H 0.262 0.738 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.029 5.025 -10.481 13.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.186 4.186 3 H 0.152 0.848 4 C 0.302 3.698 5 O -0.406 6.406 6 N -0.339 5.339 7 C 0.081 3.919 8 H 0.107 0.893 9 C -0.014 4.014 10 C -0.560 4.560 11 H 0.077 0.923 12 C -0.141 4.141 13 N -0.529 5.529 14 Si 0.718 3.282 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.075 4.075 19 C -0.125 4.125 20 C -0.140 4.140 21 C -0.152 4.152 22 C -0.143 4.143 23 C -0.127 4.127 24 C 0.418 3.582 25 F -0.152 7.152 26 F -0.167 7.167 27 F -0.156 7.156 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.238 0.762 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.442 4.337 -10.401 13.505 hybrid contribution -1.130 -0.004 -0.170 1.142 sum 6.312 4.333 -10.571 13.052 Atomic orbital electron populations 1.21857 0.89192 1.05031 1.04805 1.22651 1.01475 1.02756 0.91672 0.84763 1.19633 0.80928 0.84860 0.84409 1.90773 1.37760 1.25697 1.86409 1.45839 1.51719 1.31727 1.04591 1.20314 0.89171 0.96657 0.85709 0.89259 1.19407 0.92797 0.97988 0.91176 1.21164 0.95439 1.35293 1.04128 0.92256 1.24985 0.98943 0.95166 0.94975 1.69960 1.32942 1.41602 1.08430 0.86559 0.84023 0.79094 0.78513 1.19654 1.20954 1.20992 1.20518 0.96256 0.93669 0.97061 1.21019 0.92805 0.99670 0.99035 1.21051 0.96620 0.95656 1.00662 1.21010 0.99038 0.93717 1.01408 1.21044 0.93709 0.99158 1.00358 1.20896 0.96353 0.95213 1.00255 1.19824 0.75853 0.77979 0.84519 1.93205 1.88264 1.37133 1.96645 1.93161 1.88634 1.80942 1.54004 1.93205 1.29379 1.96371 1.96667 0.90409 0.90443 0.89072 0.76200 0.94584 0.95646 0.92853 0.86125 0.86547 0.86787 0.86685 0.86586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.85 37.16 0.33 -1.32 16 2 C -0.16 -2.02 2.71 -91.77 -0.25 -2.27 16 3 H 0.13 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.52 8.57 6.88 -10.99 -0.08 8.49 16 5 O -0.53 -10.75 14.50 5.56 0.08 -10.67 16 6 N -0.69 -11.39 3.92 -54.94 -0.22 -11.61 16 7 C 0.19 3.58 2.12 -69.08 -0.15 3.43 16 8 H 0.09 1.91 7.44 -51.93 -0.39 1.52 16 9 C 0.02 0.54 4.49 -27.88 -0.13 0.41 16 10 C -0.52 -13.18 8.84 -34.44 -0.30 -13.49 16 11 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.89 -24.79 13.29 55.43 0.74 -24.05 16 14 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 C -0.07 -1.32 4.91 -104.62 -0.51 -1.83 16 19 C -0.11 -1.81 9.67 -39.59 -0.38 -2.19 16 20 C -0.12 -1.79 10.05 -39.59 -0.40 -2.19 16 21 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 22 C -0.12 -1.78 10.05 -39.58 -0.40 -2.18 16 23 C -0.11 -1.74 9.32 -39.58 -0.37 -2.11 16 24 C 0.47 6.63 2.42 37.16 0.09 6.72 16 25 F -0.17 -2.75 15.88 2.25 0.04 -2.71 16 26 F -0.19 -2.31 16.80 2.25 0.04 -2.27 16 27 F -0.17 -2.74 16.40 2.25 0.04 -2.70 16 28 H 0.08 0.68 7.80 -51.93 -0.41 0.27 16 29 H 0.08 0.96 7.80 -51.93 -0.41 0.55 16 30 H 0.09 0.93 7.56 -51.93 -0.39 0.54 16 31 H 0.40 5.86 8.02 -40.82 -0.33 5.53 16 32 H 0.04 0.91 8.14 -51.92 -0.42 0.49 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.12 1.97 8.04 -52.49 -0.42 1.55 16 36 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.12 1.69 7.72 -52.49 -0.41 1.28 16 LS Contribution 346.48 15.07 5.22 5.22 Total: -1.00 -30.53 346.48 -6.95 -37.47 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -4.82 Total: 5.26 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -3.04 Total: -9.26 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.52 Total: -35.66 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 9 Polarization: -7.79 SS G_CDS: 0.11 Total: -7.68 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.53 -6.95 -37.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439675437.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.420 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds