Wall clock time and date at job start Tue Mar 31 2020 11:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46979 * 2 1 4 4 C 1.50695 * 109.47393 * 120.00625 * 2 1 3 5 5 O 1.21276 * 120.00241 * 119.99865 * 4 2 1 6 6 N 1.34777 * 119.99779 * 299.99814 * 4 2 1 7 7 C 1.46494 * 120.00188 * 180.02562 * 6 4 2 8 8 H 1.09000 * 109.47081 * 325.00162 * 7 6 4 9 9 C 1.53001 * 109.47302 * 205.00083 * 7 6 4 10 10 C 1.50701 * 109.47232 * 64.99671 * 9 7 6 11 11 H 1.08001 * 119.99717 * 0.02562 * 10 9 7 12 12 C 1.37876 * 119.99813 * 179.97438 * 10 9 7 13 13 N 1.31510 * 120.00272 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99744 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46889 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47032 * 120.00156 * 14 12 10 17 17 H 1.48500 * 109.46727 * 240.00432 * 14 12 10 18 18 C 1.50703 * 109.47581 * 84.99858 * 7 6 4 19 19 C 1.38235 * 120.00292 * 220.00303 * 18 7 6 20 20 C 1.38230 * 119.99899 * 179.97438 * 19 18 7 21 21 C 1.38235 * 120.00326 * 359.95697 * 20 19 18 22 22 C 1.38234 * 119.99814 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99503 * 39.97596 * 18 7 6 24 24 C 1.53001 * 109.46962 * 240.00600 * 2 1 3 25 25 F 1.39898 * 109.47009 * 299.99974 * 24 2 1 26 26 F 1.39903 * 109.47265 * 59.99721 * 24 2 1 27 27 F 1.39895 * 109.47195 * 179.97438 * 24 2 1 28 28 H 1.09001 * 109.47495 * 59.99414 * 1 2 3 29 29 H 1.08995 * 109.47049 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46940 * 299.99970 * 1 2 3 31 31 H 0.97005 * 119.99889 * 359.97438 * 6 4 2 32 32 H 1.09007 * 109.47213 * 184.99910 * 9 7 6 33 33 H 1.08998 * 109.47120 * 304.99384 * 9 7 6 34 34 H 0.97001 * 120.00530 * 179.97438 * 13 12 10 35 35 H 1.08001 * 119.99730 * 359.97438 * 19 18 7 36 36 H 1.08000 * 120.00376 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.00616 * 179.72578 * 21 20 19 38 38 H 1.08001 * 120.00299 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.00455 * 0.02562 * 23 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7296 -1.6965 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9404 3.6506 8 1 2.2327 -2.0132 3.4612 9 6 1.2517 -0.6616 4.8219 10 6 -0.0978 -1.2681 4.5350 11 1 -0.2652 -1.7996 3.6099 12 6 -1.1182 -1.1452 5.4541 13 7 -0.9141 -0.4984 6.5808 14 14 -2.7907 -1.8976 5.0987 15 1 -2.7608 -2.5671 3.7735 16 1 -3.1182 -2.8947 6.1492 17 1 -3.8224 -0.8295 5.0911 18 6 3.5770 -0.4421 3.9890 19 6 4.5446 -1.3288 4.4230 20 6 5.8118 -0.8717 4.7329 21 6 6.1117 0.4719 4.6081 22 6 5.1445 1.3584 4.1728 23 6 3.8766 0.9017 3.8650 24 6 2.0400 -0.7211 -1.2493 25 9 1.5736 -2.0401 -1.2494 26 9 1.5736 -0.0616 -2.3916 27 9 3.4389 -0.7207 -1.2497 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.1494 0.5388 2.5435 32 1 1.6616 -1.1009 5.7315 33 1 1.1454 0.4151 4.9546 34 1 -1.6321 -0.4116 7.2272 35 1 4.3105 -2.3787 4.5198 36 1 6.5678 -1.5644 5.0723 37 1 7.1005 0.8298 4.8544 38 1 5.3786 2.4082 4.0756 39 1 3.1206 1.5945 3.5260 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439675437.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:29 Heat of formation + Delta-G solvation = -198.583444 kcal Electronic energy + Delta-G solvation = -27002.687440 eV Core-core repulsion = 22686.778139 eV Total energy + Delta-G solvation = -4315.909301 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.11503 -48.60906 -48.56889 -41.24409 -39.82002 -36.87835 -35.23184 -34.63572 -32.29226 -31.67149 -30.52293 -27.40498 -26.87097 -24.63455 -23.78515 -23.33328 -21.77774 -21.19412 -19.77131 -19.47566 -18.82347 -18.43278 -17.70779 -17.61611 -16.93954 -16.47515 -16.26872 -15.89440 -15.56708 -15.31130 -15.25348 -14.98370 -14.80755 -14.72988 -14.67579 -14.54385 -14.19399 -14.13314 -14.01267 -13.67970 -13.46451 -13.36428 -13.00858 -12.89282 -12.62689 -12.46930 -12.38914 -12.13108 -11.87348 -11.59749 -11.30905 -10.99552 -10.57270 -10.06524 -9.74849 -9.52327 -8.19097 -6.28986 0.50935 0.56812 1.39491 1.43703 1.49120 1.53934 1.57408 2.11587 2.41119 2.66281 2.95344 3.02254 3.13867 3.20585 3.72051 3.84016 3.95454 4.03689 4.04653 4.21855 4.33130 4.44042 4.64796 4.66037 4.68942 4.76180 4.79292 5.11872 5.13983 5.20509 5.24417 5.44511 5.58389 5.61793 5.65250 5.79283 5.87863 6.16694 6.21160 6.53245 6.84378 7.17771 7.40419 8.91705 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.008508 B = 0.006220 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.055023 B = 4500.528127 C = 7130.462667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.150 4.150 3 H 0.175 0.825 4 C 0.516 3.484 5 O -0.572 6.572 6 N -0.684 5.684 7 C 0.202 3.798 8 H 0.059 0.941 9 C 0.038 3.962 10 C -0.527 4.527 11 H 0.056 0.944 12 C 0.013 3.987 13 N -0.926 5.926 14 Si 0.953 3.047 15 H -0.267 1.267 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.100 4.100 19 C -0.134 4.134 20 C -0.125 4.125 21 C -0.130 4.130 22 C -0.124 4.124 23 C -0.120 4.120 24 C 0.470 3.530 25 F -0.187 7.187 26 F -0.173 7.173 27 F -0.187 7.187 28 H 0.106 0.894 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.414 0.586 32 H 0.003 0.997 33 H 0.017 0.983 34 H 0.263 0.737 35 H 0.111 0.889 36 H 0.141 0.859 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.304 6.850 -11.522 15.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 H 0.192 0.808 4 C 0.301 3.699 5 O -0.452 6.452 6 N -0.333 5.333 7 C 0.097 3.903 8 H 0.077 0.923 9 C 0.000 4.000 10 C -0.565 4.565 11 H 0.074 0.926 12 C -0.186 4.186 13 N -0.566 5.566 14 Si 0.779 3.221 15 H -0.191 1.191 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.101 4.101 19 C -0.152 4.152 20 C -0.143 4.143 21 C -0.148 4.148 22 C -0.142 4.142 23 C -0.138 4.138 24 C 0.415 3.585 25 F -0.169 7.169 26 F -0.154 7.154 27 F -0.168 7.168 28 H 0.125 0.875 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.251 0.749 32 H 0.021 0.979 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.129 0.871 36 H 0.159 0.841 37 H 0.167 0.833 38 H 0.166 0.834 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.703 6.183 -11.458 15.128 hybrid contribution -1.132 -0.574 0.159 1.279 sum 6.571 5.608 -11.299 14.223 Atomic orbital electron populations 1.21922 0.87692 1.04408 1.06696 1.22680 1.02448 1.03753 0.88373 0.80751 1.20278 0.80019 0.84360 0.85247 1.90755 1.39675 1.27700 1.87049 1.45678 1.51784 1.31759 1.04076 1.19753 0.89825 0.95355 0.85392 0.92326 1.19145 0.92661 0.96729 0.91445 1.21426 0.96438 1.34768 1.03829 0.92562 1.25737 1.02440 0.95620 0.94797 1.70068 1.34076 1.43045 1.09385 0.85580 0.80011 0.78320 0.78222 1.19128 1.21274 1.19987 1.20440 0.95470 0.95028 0.99211 1.21171 0.94221 0.99444 1.00388 1.21374 0.96000 0.96992 0.99940 1.21475 1.00518 0.93059 0.99702 1.21459 0.92782 1.00960 0.98987 1.21107 0.97790 0.94412 1.00519 1.20049 0.75345 0.77546 0.85523 1.93174 1.88384 1.38558 1.96779 1.93184 1.88376 1.80486 1.53386 1.93182 1.30451 1.96383 1.96781 0.87489 0.92338 0.88208 0.74933 0.97886 0.96489 0.92769 0.87112 0.84108 0.83256 0.83433 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.85 71.98 0.64 -2.28 16 2 C -0.15 -3.45 2.71 -11.54 -0.03 -3.48 16 3 H 0.18 2.60 8.14 -2.38 -0.02 2.58 16 4 C 0.52 16.93 6.88 87.66 0.60 17.54 16 5 O -0.57 -23.82 14.50 -3.02 -0.04 -23.87 16 6 N -0.68 -22.66 3.92 -446.11 -1.75 -24.41 16 7 C 0.20 8.12 2.12 44.25 0.09 8.21 16 8 H 0.06 2.69 7.44 -2.39 -0.02 2.67 16 9 C 0.04 1.79 4.49 29.85 0.13 1.93 16 10 C -0.53 -27.18 8.84 25.60 0.23 -26.96 16 11 H 0.06 2.89 7.74 -2.91 -0.02 2.87 16 12 C 0.01 0.68 5.46 84.66 0.46 1.14 16 13 N -0.93 -52.36 13.29 21.45 0.28 -52.07 16 14 Si 0.95 41.87 29.54 68.60 2.03 43.90 16 15 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 16 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 18 C -0.10 -3.67 4.91 -19.87 -0.10 -3.76 16 19 C -0.13 -4.67 9.67 22.27 0.22 -4.46 16 20 C -0.13 -3.54 10.05 22.27 0.22 -3.32 16 21 C -0.13 -3.22 10.05 22.27 0.22 -3.00 16 22 C -0.12 -3.21 10.05 22.27 0.22 -2.98 16 23 C -0.12 -3.73 9.32 22.27 0.21 -3.52 16 24 C 0.47 12.56 2.42 71.98 0.17 12.73 16 25 F -0.19 -6.00 15.88 44.97 0.71 -5.28 16 26 F -0.17 -3.89 16.80 44.97 0.76 -3.14 16 27 F -0.19 -5.70 16.40 44.97 0.74 -4.96 16 28 H 0.11 1.49 7.80 -2.39 -0.02 1.47 16 29 H 0.06 1.38 7.80 -2.39 -0.02 1.36 16 30 H 0.10 1.79 7.56 -2.39 -0.02 1.77 16 31 H 0.41 11.73 8.02 -92.70 -0.74 10.98 16 32 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 33 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 35 H 0.11 3.91 8.04 -2.91 -0.02 3.88 16 36 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 37 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 38 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 39 H 0.13 3.52 7.72 -2.91 -0.02 3.50 16 Total: -1.00 -68.04 346.48 6.36 -61.68 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.34 Total: 20.36 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 3.30 Total: -12.21 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -1.46 Total: -76.48 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.04 Total: -23.87 kcal Atomic # 9 Polarization: -15.59 SS G_CDS: 2.21 Total: -13.38 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -68.04 6.36 -61.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439675437.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.904 kcal (2) G-P(sol) polarization free energy of solvation -68.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds