Wall clock time and date at job start Tue Mar 31 2020 11:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47501 * 2 1 4 4 C 1.50705 * 109.47465 * 120.00377 * 2 1 3 5 5 O 1.21280 * 119.99748 * 119.99802 * 4 2 1 6 6 N 1.34769 * 119.99510 * 300.00150 * 4 2 1 7 7 C 1.46505 * 119.99798 * 179.97438 * 6 4 2 8 8 H 1.09002 * 109.47068 * 34.99973 * 7 6 4 9 9 C 1.53002 * 109.47411 * 155.00053 * 7 6 4 10 10 C 1.50703 * 109.46970 * 295.00193 * 9 7 6 11 11 H 1.08002 * 119.99817 * 359.97438 * 10 9 7 12 12 C 1.37870 * 120.00164 * 179.97438 * 10 9 7 13 13 N 1.31515 * 120.00141 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99889 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47364 * 89.99969 * 14 12 10 16 16 H 1.48507 * 109.46859 * 210.00165 * 14 12 10 17 17 H 1.48503 * 109.47014 * 329.99390 * 14 12 10 18 18 C 1.50703 * 109.47064 * 275.00004 * 7 6 4 19 19 C 1.38237 * 119.99761 * 319.72219 * 18 7 6 20 20 C 1.38239 * 119.99722 * 179.81066 * 19 18 7 21 21 C 1.38241 * 119.99799 * 0.39917 * 20 19 18 22 22 C 1.38235 * 120.00087 * 359.85825 * 21 20 19 23 23 C 1.38232 * 120.00102 * 359.95094 * 22 21 20 24 24 C 1.52999 * 109.47069 * 240.00464 * 2 1 3 25 25 F 1.39901 * 109.47303 * 299.99870 * 24 2 1 26 26 F 1.39902 * 109.47519 * 59.99819 * 24 2 1 27 27 F 1.39898 * 109.47293 * 180.02562 * 24 2 1 28 28 H 1.09001 * 109.46750 * 59.99847 * 1 2 3 29 29 H 1.09000 * 109.46985 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46639 * 299.99863 * 1 2 3 31 31 H 0.97005 * 120.00963 * 359.97438 * 6 4 2 32 32 H 1.09000 * 109.47059 * 54.99891 * 9 7 6 33 33 H 1.08996 * 109.47073 * 174.99983 * 9 7 6 34 34 H 0.97001 * 120.00015 * 179.97438 * 13 12 10 35 35 H 1.07999 * 120.00184 * 0.02562 * 19 18 7 36 36 H 1.07994 * 120.00159 * 180.23623 * 20 19 18 37 37 H 1.08001 * 119.99569 * 179.83641 * 21 20 19 38 38 H 1.07996 * 120.00048 * 179.97438 * 22 21 20 39 39 H 1.07996 * 120.00285 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7297 -1.6966 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1948 -0.9411 3.6506 8 1 3.1939 -1.3336 3.4614 9 6 2.2464 0.0418 4.8221 10 6 3.2680 1.1120 4.5352 11 1 3.8250 1.0927 3.6101 12 6 3.4916 2.1156 5.4536 13 7 4.3835 3.0492 5.2035 14 14 2.5277 2.1493 7.0534 15 1 3.2606 1.3781 8.0893 16 1 2.3663 3.5550 7.5045 17 1 1.1897 1.5420 6.8380 18 6 1.2644 -2.0773 3.9890 19 6 -0.1027 -1.9098 3.8709 20 6 -0.9559 -2.9534 4.1775 21 6 -0.4423 -4.1617 4.6101 22 6 0.9245 -4.3275 4.7333 23 6 1.7779 -3.2852 4.4230 24 6 2.0400 -0.7211 -1.2493 25 9 1.5737 -2.0402 -1.2494 26 9 1.5736 -0.0616 -2.3916 27 9 3.4390 -0.7217 -1.2491 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.1494 0.5388 2.5436 32 1 1.2667 0.5010 4.9546 33 1 2.5240 -0.4910 5.7315 34 1 4.5405 3.7555 5.8495 35 1 -0.5040 -0.9649 3.5357 36 1 -2.0237 -2.8238 4.0816 37 1 -1.1090 -4.9762 4.8522 38 1 1.3257 -5.2713 5.0717 39 1 2.8458 -3.4148 4.5188 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439675438.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:31 Heat of formation + Delta-G solvation = -177.656465 kcal Electronic energy + Delta-G solvation = -27055.685854 eV Core-core repulsion = 22740.684015 eV Total energy + Delta-G solvation = -4315.001839 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.97564 -47.50698 -47.36075 -39.95843 -38.66246 -35.46563 -34.11250 -32.69047 -31.11049 -30.59555 -29.36004 -26.46840 -25.36243 -23.34577 -22.36302 -21.84142 -20.47569 -19.88207 -18.61598 -18.31953 -17.53099 -17.14953 -16.52789 -16.36901 -15.48216 -15.19193 -14.84905 -14.41238 -14.39376 -14.12860 -14.08054 -13.82252 -13.62193 -13.53751 -13.43013 -13.27393 -13.13329 -12.98581 -12.69711 -12.49548 -12.42478 -12.03948 -11.87365 -11.46171 -11.39895 -11.15171 -10.79723 -10.71184 -10.25944 -9.92560 -9.65482 -9.40714 -8.72071 -8.68368 -8.64072 -8.37495 -6.17649 -4.18409 1.61096 1.65150 2.67558 2.78511 3.20595 3.29086 3.30692 3.33477 3.75211 4.05093 4.09959 4.31751 4.31898 4.79757 4.81712 5.01367 5.11988 5.12096 5.16527 5.21624 5.32266 5.37242 5.47850 5.74533 5.76858 5.80864 5.94819 6.15333 6.24031 6.34724 6.61121 6.68703 6.71472 6.85535 6.95676 7.20207 7.25005 7.57232 7.81263 8.36109 8.44948 8.87260 9.42737 10.94895 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.010105 B = 0.005562 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.337207 B = 5032.604769 C = 6953.621907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.165 4.165 3 H 0.141 0.859 4 C 0.522 3.478 5 O -0.528 6.528 6 N -0.690 5.690 7 C 0.195 3.805 8 H 0.095 0.905 9 C -0.014 4.014 10 C -0.524 4.524 11 H 0.076 0.924 12 C 0.072 3.928 13 N -0.896 5.896 14 Si 0.875 3.125 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.265 1.265 18 C -0.079 4.079 19 C -0.109 4.109 20 C -0.125 4.125 21 C -0.132 4.132 22 C -0.121 4.121 23 C -0.106 4.106 24 C 0.473 3.527 25 F -0.174 7.174 26 F -0.186 7.186 27 F -0.172 7.172 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.403 0.597 32 H 0.024 0.976 33 H 0.031 0.969 34 H 0.265 0.735 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.590 -7.861 -7.614 15.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.188 4.188 3 H 0.158 0.842 4 C 0.305 3.695 5 O -0.405 6.405 6 N -0.339 5.339 7 C 0.091 3.909 8 H 0.113 0.887 9 C -0.051 4.051 10 C -0.562 4.562 11 H 0.094 0.906 12 C -0.130 4.130 13 N -0.534 5.534 14 Si 0.702 3.298 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.190 1.190 18 C -0.080 4.080 19 C -0.128 4.128 20 C -0.143 4.143 21 C -0.150 4.150 22 C -0.139 4.139 23 C -0.125 4.125 24 C 0.419 3.581 25 F -0.155 7.155 26 F -0.167 7.167 27 F -0.153 7.153 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.238 0.762 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.974 -8.411 -7.629 15.792 hybrid contribution -0.547 0.535 0.781 1.093 sum -11.521 -7.877 -6.848 15.545 Atomic orbital electron populations 1.21823 0.89639 1.04450 1.04683 1.22655 1.01067 1.03402 0.91642 0.84165 1.19591 0.80882 0.84676 0.84329 1.90777 1.37402 1.25891 1.86384 1.45742 1.52564 1.31101 1.04541 1.20022 0.95553 0.90116 0.85174 0.88736 1.19879 0.98253 0.94361 0.92628 1.21006 1.21053 1.07930 1.06229 0.90579 1.24983 0.94765 0.95266 0.98014 1.69903 1.33402 1.13962 1.36128 0.86860 0.81216 0.77336 0.84362 1.20159 1.21311 1.18974 1.20534 0.94630 0.95440 0.97373 1.20911 0.92955 0.98680 1.00224 1.21054 0.99241 0.93647 1.00328 1.21034 0.95304 0.97450 1.01214 1.21071 0.93582 0.98700 1.00594 1.21048 1.00024 0.92530 0.98856 1.19796 0.76063 0.77781 0.84479 1.93191 1.88324 1.37307 1.96669 1.93163 1.88635 1.80933 1.53970 1.93226 1.29131 1.96328 1.96634 0.90203 0.90720 0.89655 0.76172 0.95759 0.95067 0.92555 0.86513 0.86614 0.86713 0.86444 0.85963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.85 37.16 0.33 -1.06 16 2 C -0.17 -2.08 2.71 -91.77 -0.25 -2.33 16 3 H 0.14 1.51 8.14 -51.93 -0.42 1.09 16 4 C 0.52 8.65 6.88 -10.99 -0.08 8.57 16 5 O -0.53 -10.72 14.49 5.56 0.08 -10.64 16 6 N -0.69 -11.28 3.93 -54.93 -0.22 -11.49 16 7 C 0.20 3.64 2.11 -69.08 -0.15 3.50 16 8 H 0.09 1.98 7.44 -51.93 -0.39 1.60 16 9 C -0.01 -0.29 3.56 -27.88 -0.10 -0.39 16 10 C -0.52 -13.52 9.39 -34.44 -0.32 -13.84 16 11 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 12 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 13 N -0.90 -26.07 13.96 55.43 0.77 -25.30 16 14 Si 0.88 20.24 27.47 -169.99 -4.67 15.57 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.27 -5.82 6.54 56.52 0.37 -5.45 16 18 C -0.08 -1.32 4.91 -104.62 -0.51 -1.83 16 19 C -0.11 -1.62 9.32 -39.58 -0.37 -1.99 16 20 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 21 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 22 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 23 C -0.11 -1.69 9.67 -39.58 -0.38 -2.07 16 24 C 0.47 6.72 2.42 37.16 0.09 6.81 16 25 F -0.17 -2.69 15.88 2.25 0.04 -2.65 16 26 F -0.19 -2.33 16.80 2.25 0.04 -2.30 16 27 F -0.17 -2.85 16.40 2.25 0.04 -2.81 16 28 H 0.08 0.61 7.80 -51.93 -0.41 0.21 16 29 H 0.07 0.74 7.80 -51.93 -0.41 0.34 16 30 H 0.08 0.67 7.56 -51.93 -0.39 0.27 16 31 H 0.40 5.75 8.02 -40.82 -0.33 5.42 16 32 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 33 H 0.03 0.68 7.57 -51.93 -0.39 0.29 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.12 1.54 7.73 -52.49 -0.41 1.13 16 36 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 39 H 0.12 1.88 8.04 -52.49 -0.42 1.45 16 LS Contribution 342.89 15.07 5.17 5.17 Total: -1.00 -31.53 342.89 -6.57 -38.10 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -4.79 Total: 5.33 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -3.03 Total: -8.98 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.56 Total: -36.79 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.08 Total: -10.64 kcal Atomic # 9 Polarization: -7.88 SS G_CDS: 0.11 Total: -7.76 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.57 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.53 -6.57 -38.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439675438.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.553 kcal (2) G-P(sol) polarization free energy of solvation -31.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds