Wall clock time and date at job start Tue Mar 31 2020 11:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47501 * 2 1 4 4 C 1.50705 * 109.47465 * 120.00377 * 2 1 3 5 5 O 1.21280 * 119.99748 * 119.99802 * 4 2 1 6 6 N 1.34769 * 119.99510 * 300.00150 * 4 2 1 7 7 C 1.46505 * 119.99798 * 179.97438 * 6 4 2 8 8 H 1.09002 * 109.47068 * 34.99973 * 7 6 4 9 9 C 1.53002 * 109.47411 * 155.00053 * 7 6 4 10 10 C 1.50703 * 109.46970 * 295.00193 * 9 7 6 11 11 H 1.08002 * 119.99817 * 359.97438 * 10 9 7 12 12 C 1.37870 * 120.00164 * 179.97438 * 10 9 7 13 13 N 1.31515 * 120.00141 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99889 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47364 * 89.99969 * 14 12 10 16 16 H 1.48507 * 109.46859 * 210.00165 * 14 12 10 17 17 H 1.48503 * 109.47014 * 329.99390 * 14 12 10 18 18 C 1.50703 * 109.47064 * 275.00004 * 7 6 4 19 19 C 1.38237 * 119.99761 * 319.72219 * 18 7 6 20 20 C 1.38239 * 119.99722 * 179.81066 * 19 18 7 21 21 C 1.38241 * 119.99799 * 0.39917 * 20 19 18 22 22 C 1.38235 * 120.00087 * 359.85825 * 21 20 19 23 23 C 1.38232 * 120.00102 * 359.95094 * 22 21 20 24 24 C 1.52999 * 109.47069 * 240.00464 * 2 1 3 25 25 F 1.39901 * 109.47303 * 299.99870 * 24 2 1 26 26 F 1.39902 * 109.47519 * 59.99819 * 24 2 1 27 27 F 1.39898 * 109.47293 * 180.02562 * 24 2 1 28 28 H 1.09001 * 109.46750 * 59.99847 * 1 2 3 29 29 H 1.09000 * 109.46985 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46639 * 299.99863 * 1 2 3 31 31 H 0.97005 * 120.00963 * 359.97438 * 6 4 2 32 32 H 1.09000 * 109.47059 * 54.99891 * 9 7 6 33 33 H 1.08996 * 109.47073 * 174.99983 * 9 7 6 34 34 H 0.97001 * 120.00015 * 179.97438 * 13 12 10 35 35 H 1.07999 * 120.00184 * 0.02562 * 19 18 7 36 36 H 1.07994 * 120.00159 * 180.23623 * 20 19 18 37 37 H 1.08001 * 119.99569 * 179.83641 * 21 20 19 38 38 H 1.07996 * 120.00048 * 179.97438 * 22 21 20 39 39 H 1.07996 * 120.00285 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7297 -1.6966 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1948 -0.9411 3.6506 8 1 3.1939 -1.3336 3.4614 9 6 2.2464 0.0418 4.8221 10 6 3.2680 1.1120 4.5352 11 1 3.8250 1.0927 3.6101 12 6 3.4916 2.1156 5.4536 13 7 4.3835 3.0492 5.2035 14 14 2.5277 2.1493 7.0534 15 1 3.2606 1.3781 8.0893 16 1 2.3663 3.5550 7.5045 17 1 1.1897 1.5420 6.8380 18 6 1.2644 -2.0773 3.9890 19 6 -0.1027 -1.9098 3.8709 20 6 -0.9559 -2.9534 4.1775 21 6 -0.4423 -4.1617 4.6101 22 6 0.9245 -4.3275 4.7333 23 6 1.7779 -3.2852 4.4230 24 6 2.0400 -0.7211 -1.2493 25 9 1.5737 -2.0402 -1.2494 26 9 1.5736 -0.0616 -2.3916 27 9 3.4390 -0.7217 -1.2491 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.1494 0.5388 2.5436 32 1 1.2667 0.5010 4.9546 33 1 2.5240 -0.4910 5.7315 34 1 4.5405 3.7555 5.8495 35 1 -0.5040 -0.9649 3.5357 36 1 -2.0237 -2.8238 4.0816 37 1 -1.1090 -4.9762 4.8522 38 1 1.3257 -5.2713 5.0717 39 1 2.8458 -3.4148 4.5188 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439675438.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:30 Heat of formation + Delta-G solvation = -196.178861 kcal Electronic energy + Delta-G solvation = -27056.489045 eV Core-core repulsion = 22740.684015 eV Total energy + Delta-G solvation = -4315.805030 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.13104 -48.63076 -48.57961 -41.27265 -39.82816 -36.92239 -35.24269 -34.61199 -32.39539 -31.67947 -30.96165 -27.40820 -26.94051 -24.56872 -23.59147 -23.23568 -21.79065 -21.21259 -19.79459 -19.48960 -19.05597 -18.65441 -17.80565 -17.60897 -16.79212 -16.44260 -16.29129 -15.89322 -15.57150 -15.32750 -15.30910 -15.00910 -14.82639 -14.77473 -14.70990 -14.61195 -14.36507 -14.15914 -14.01149 -13.84865 -13.54420 -13.41374 -13.04681 -12.94850 -12.57313 -12.41898 -12.36337 -11.92598 -11.74413 -11.72546 -11.41620 -11.01251 -10.76024 -10.09798 -9.74598 -9.54134 -8.26852 -6.32008 0.49735 0.57143 1.38638 1.40776 1.49280 1.50844 1.54983 2.09971 2.36773 2.64870 2.94330 3.01122 3.07807 3.18502 3.69354 3.82756 3.93188 4.02577 4.04093 4.21872 4.33846 4.36996 4.58327 4.65231 4.70142 4.73637 4.77755 5.01123 5.10498 5.15495 5.19835 5.25561 5.49522 5.56695 5.65997 5.66227 5.84435 6.18846 6.26199 6.50204 6.75737 7.16108 7.32579 8.89147 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.010105 B = 0.005562 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.337207 B = 5032.604769 C = 6953.621907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.156 4.156 3 H 0.161 0.839 4 C 0.517 3.483 5 O -0.572 6.572 6 N -0.685 5.685 7 C 0.206 3.794 8 H 0.056 0.944 9 C -0.005 4.005 10 C -0.521 4.521 11 H 0.034 0.966 12 C 0.013 3.987 13 N -0.947 5.947 14 Si 0.943 3.057 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.238 1.238 18 C -0.101 4.101 19 C -0.117 4.117 20 C -0.122 4.122 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.132 4.132 24 C 0.470 3.530 25 F -0.183 7.183 26 F -0.173 7.173 27 F -0.191 7.191 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.414 0.586 32 H 0.043 0.957 33 H 0.028 0.972 34 H 0.265 0.735 35 H 0.132 0.868 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.139 0.861 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.323 -8.433 -6.931 18.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 H 0.178 0.822 4 C 0.302 3.698 5 O -0.452 6.452 6 N -0.334 5.334 7 C 0.101 3.899 8 H 0.074 0.926 9 C -0.042 4.042 10 C -0.559 4.559 11 H 0.052 0.948 12 C -0.185 4.185 13 N -0.587 5.587 14 Si 0.767 3.233 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.161 1.161 18 C -0.102 4.102 19 C -0.135 4.135 20 C -0.140 4.140 21 C -0.146 4.146 22 C -0.143 4.143 23 C -0.151 4.151 24 C 0.415 3.585 25 F -0.164 7.164 26 F -0.154 7.154 27 F -0.173 7.173 28 H 0.122 0.878 29 H 0.088 0.912 30 H 0.123 0.877 31 H 0.252 0.748 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.150 0.850 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.157 0.843 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.741 -8.980 -6.957 18.610 hybrid contribution 0.668 0.644 0.486 1.047 sum -14.073 -8.336 -6.471 17.590 Atomic orbital electron populations 1.21921 0.86543 1.04825 1.06868 1.22702 1.03438 1.03212 0.88463 0.82178 1.20241 0.79998 0.84244 0.85306 1.90754 1.39332 1.28038 1.87065 1.45643 1.52374 1.31298 1.04104 1.19587 0.94845 0.90459 0.85034 0.92595 1.19742 0.97343 0.93516 0.93634 1.21207 1.21236 1.08948 1.04465 0.94811 1.25873 0.95860 0.94839 1.01883 1.70061 1.35747 1.15172 1.37742 0.85779 0.80814 0.77381 0.79374 1.20182 1.21233 1.16123 1.20356 0.95330 0.94941 0.99617 1.21132 0.92056 1.00125 1.00188 1.21462 1.00720 0.92982 0.98856 1.21483 0.95180 0.98364 0.99539 1.21362 0.94135 0.98806 1.00013 1.21173 1.00129 0.93516 1.00254 1.20055 0.75225 0.77663 0.85541 1.93169 1.88297 1.38194 1.96777 1.93183 1.88325 1.80542 1.53393 1.93188 1.30903 1.96401 1.96787 0.87837 0.91241 0.87660 0.74848 0.93922 0.95358 0.92568 0.85017 0.83323 0.83399 0.84279 0.87153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.85 71.98 0.64 -1.66 16 2 C -0.16 -3.76 2.71 -11.54 -0.03 -3.79 16 3 H 0.16 3.21 8.14 -2.39 -0.02 3.19 16 4 C 0.52 17.33 6.88 87.66 0.60 17.94 16 5 O -0.57 -24.26 14.49 -3.03 -0.04 -24.30 16 6 N -0.68 -22.40 3.93 -446.08 -1.75 -24.16 16 7 C 0.21 7.86 2.11 44.25 0.09 7.96 16 8 H 0.06 2.54 7.44 -2.39 -0.02 2.52 16 9 C 0.00 -0.20 3.56 29.85 0.11 -0.09 16 10 C -0.52 -27.59 9.39 25.60 0.24 -27.35 16 11 H 0.03 2.03 7.99 -2.91 -0.02 2.00 16 12 C 0.01 0.71 5.47 84.65 0.46 1.17 16 13 N -0.95 -56.72 13.96 21.44 0.30 -56.42 16 14 Si 0.94 41.31 27.47 68.60 1.88 43.20 16 15 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.24 -9.33 6.54 99.48 0.65 -8.68 16 18 C -0.10 -3.36 4.91 -19.86 -0.10 -3.45 16 19 C -0.12 -3.16 9.32 22.27 0.21 -2.95 16 20 C -0.12 -2.73 10.05 22.27 0.22 -2.51 16 21 C -0.13 -2.80 10.05 22.27 0.22 -2.57 16 22 C -0.13 -3.20 10.05 22.27 0.22 -2.97 16 23 C -0.13 -4.23 9.67 22.27 0.22 -4.01 16 24 C 0.47 13.13 2.42 71.98 0.17 13.30 16 25 F -0.18 -5.65 15.88 44.97 0.71 -4.94 16 26 F -0.17 -4.10 16.80 44.97 0.76 -3.35 16 27 F -0.19 -6.51 16.40 44.97 0.74 -5.77 16 28 H 0.10 1.21 7.80 -2.39 -0.02 1.19 16 29 H 0.07 1.21 7.80 -2.39 -0.02 1.20 16 30 H 0.10 1.27 7.56 -2.39 -0.02 1.25 16 31 H 0.41 11.36 8.02 -92.70 -0.74 10.62 16 32 H 0.04 1.67 7.20 -2.39 -0.02 1.65 16 33 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 34 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 35 H 0.13 3.04 7.73 -2.91 -0.02 3.02 16 36 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 39 H 0.11 3.62 8.04 -2.91 -0.02 3.59 16 Total: -1.00 -71.76 342.89 6.16 -65.60 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.28 Total: 21.14 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 3.28 Total: -11.00 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -1.46 Total: -80.57 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.04 Total: -24.30 kcal Atomic # 9 Polarization: -16.27 SS G_CDS: 2.21 Total: -14.06 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 1.88 Total: 43.20 kcal Total: -71.76 6.16 -65.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439675438.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.577 kcal (2) G-P(sol) polarization free energy of solvation -71.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds