Wall clock time and date at job start Tue Mar 31 2020 11:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46509 * 109.47038 * 2 1 4 4 C 1.36866 * 119.99841 * 270.59736 * 3 2 1 5 5 H 1.07994 * 119.99702 * 134.37566 * 4 3 2 6 6 C 1.39051 * 119.99984 * 314.37324 * 4 3 2 7 7 N 1.31366 * 119.99797 * 171.87066 * 6 4 3 8 8 Si 1.86800 * 120.00291 * 351.87212 * 6 4 3 9 9 H 1.48499 * 109.47095 * 95.55391 * 8 6 4 10 10 H 1.48495 * 109.47210 * 215.55491 * 8 6 4 11 11 H 1.48501 * 109.46870 * 335.55247 * 8 6 4 12 12 C 1.34772 * 119.99696 * 90.60339 * 3 2 1 13 13 O 1.21595 * 120.00316 * 348.59134 * 12 3 2 14 14 C 1.47730 * 119.99771 * 168.32612 * 12 3 2 15 15 C 1.39646 * 120.14573 * 339.81948 * 14 12 3 16 16 C 1.37941 * 119.84124 * 179.72487 * 15 14 12 17 17 C 1.38378 * 120.15106 * 0.55793 * 16 15 14 18 18 C 1.50704 * 119.84696 * 179.70164 * 17 16 15 19 19 H 1.08998 * 109.47036 * 180.02562 * 18 17 16 20 20 C 1.53002 * 109.46660 * 300.01856 * 18 17 16 21 21 C 1.52998 * 109.47088 * 60.01603 * 18 17 16 22 22 F 1.39890 * 109.47301 * 60.00595 * 21 18 17 23 23 F 1.39909 * 109.46762 * 180.02562 * 21 18 17 24 24 F 1.39901 * 109.47394 * 299.99997 * 21 18 17 25 25 C 1.38375 * 120.30497 * 359.71581 * 17 16 15 26 26 C 1.37932 * 120.15000 * 0.02562 * 25 17 16 27 27 H 1.09003 * 109.46893 * 59.99974 * 1 2 3 28 28 H 1.08993 * 109.46720 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46835 * 300.00143 * 1 2 3 30 30 H 1.08998 * 109.47529 * 239.99778 * 2 1 3 31 31 H 1.09005 * 109.46963 * 119.99489 * 2 1 3 32 32 H 0.96996 * 119.99529 * 180.02562 * 7 6 4 33 33 H 1.07996 * 120.08062 * 359.97438 * 15 14 12 34 34 H 1.07997 * 119.92361 * 180.29581 * 16 15 14 35 35 H 1.08999 * 109.46857 * 180.02562 * 20 18 17 36 36 H 1.08998 * 109.47483 * 299.99652 * 20 18 17 37 37 H 1.09000 * 109.47564 * 60.00205 * 20 18 17 38 38 H 1.08004 * 119.92206 * 179.97438 * 25 17 16 39 39 H 1.08003 * 120.07214 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2348 2.0306 -1.1853 5 1 1.8820 3.0425 -1.3188 6 6 2.9090 1.3874 -2.2173 7 7 2.9780 1.9451 -3.4047 8 14 3.7166 -0.2698 -1.9155 9 1 2.7928 -1.3543 -2.3346 10 1 4.9732 -0.3586 -2.7016 11 1 4.0257 -0.4138 -0.4701 12 6 2.2545 2.0125 1.1671 13 8 1.8719 1.5220 2.2119 14 6 2.9835 3.2974 1.1777 15 6 3.7838 3.6585 0.0918 16 6 4.4572 4.8623 0.1057 17 6 4.3502 5.7060 1.1974 18 6 5.0942 7.0165 1.2083 19 1 4.8912 7.5418 2.1415 20 6 6.5963 6.7511 1.0888 21 6 4.6326 7.8748 0.0289 22 9 3.2593 8.1175 0.1381 23 9 5.3238 9.0912 0.0387 24 9 4.8933 7.2006 -1.1689 25 6 3.5634 5.3516 2.2792 26 6 2.8804 4.1533 2.2761 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.4480 1.4962 -4.1247 33 1 3.8721 2.9988 -0.7587 34 1 5.0727 5.1451 -0.7354 35 1 7.1345 7.6989 1.0972 36 1 6.9252 6.1396 1.9290 37 1 6.7994 6.2257 0.1556 38 1 3.4847 6.0146 3.1282 39 1 2.2664 3.8782 3.1210 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454992171.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:47 Heat of formation + Delta-G solvation = -154.886137 kcal Electronic energy + Delta-G solvation = -27165.688523 eV Core-core repulsion = 22851.674080 eV Total energy + Delta-G solvation = -4314.014443 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.01674 -47.52587 -47.44260 -39.67577 -38.18351 -35.31045 -34.59491 -32.34859 -30.91912 -30.11679 -28.94404 -26.37070 -25.18773 -23.94302 -22.52895 -22.07697 -20.84661 -19.33030 -18.38491 -18.30782 -17.66822 -17.29564 -16.29650 -15.74135 -15.35157 -14.64451 -14.47270 -14.34308 -14.21004 -14.04184 -13.91080 -13.73537 -13.63717 -13.41449 -13.29874 -13.12442 -12.96918 -12.87413 -12.66283 -12.30189 -12.18848 -12.01272 -11.68007 -11.45790 -11.31505 -11.14365 -10.94558 -10.75917 -10.45427 -10.17066 -9.83913 -9.26839 -8.75393 -8.41719 -8.27425 -7.83925 -6.58608 -4.27099 1.35950 1.95800 2.84573 2.97052 3.12647 3.17122 3.57376 3.88448 3.98072 4.03759 4.11955 4.28450 4.48900 4.75359 4.86393 4.93507 5.00003 5.38472 5.48776 5.50696 5.60267 5.66234 5.80185 5.91927 5.99635 6.01948 6.08232 6.14468 6.33228 6.39772 6.55437 6.60805 6.81066 6.85203 7.02220 7.18115 7.27658 7.51643 7.94568 8.14509 8.79027 9.17198 9.53034 10.48534 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.004558 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.398268 B = 6141.578675 C = 6906.223731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.101 3.899 3 N -0.461 5.461 4 C -0.337 4.337 5 H 0.107 0.893 6 C 0.062 3.938 7 N -0.857 5.857 8 Si 0.884 3.116 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.260 1.260 12 C 0.521 3.479 13 O -0.592 6.592 14 C -0.096 4.096 15 C -0.065 4.065 16 C -0.128 4.128 17 C -0.098 4.098 18 C -0.087 4.087 19 H 0.116 0.884 20 C -0.149 4.149 21 C 0.454 3.546 22 F -0.180 7.180 23 F -0.189 7.189 24 F -0.175 7.175 25 C -0.124 4.124 26 C -0.079 4.079 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.278 0.722 33 H 0.178 0.822 34 H 0.128 0.872 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.119 0.881 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.709 8.186 6.105 11.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.022 4.022 3 N -0.181 5.181 4 C -0.464 4.464 5 H 0.125 0.875 6 C -0.146 4.146 7 N -0.491 5.491 8 Si 0.712 3.288 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.185 1.185 12 C 0.312 3.688 13 O -0.477 6.477 14 C -0.098 4.098 15 C -0.082 4.082 16 C -0.145 4.145 17 C -0.098 4.098 18 C -0.107 4.107 19 H 0.134 0.866 20 C -0.206 4.206 21 C 0.400 3.600 22 F -0.161 7.161 23 F -0.170 7.170 24 F -0.156 7.156 25 C -0.142 4.142 26 C -0.098 4.098 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.195 0.805 34 H 0.146 0.854 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.556 7.923 6.341 11.570 hybrid contribution 0.190 -0.584 -0.422 0.745 sum 5.747 7.339 5.919 11.042 Atomic orbital electron populations 1.21999 0.96275 1.00705 1.02529 1.21608 0.94763 0.85340 1.00455 1.43586 1.57152 1.11770 1.05624 1.19098 1.36679 1.01657 0.88995 0.87533 1.25509 0.95574 0.98481 0.95060 1.69645 1.39327 1.39026 1.01101 0.86777 0.79064 0.83525 0.79484 1.19870 1.21371 1.18469 1.18340 0.81288 0.85826 0.83378 1.90623 1.55859 1.68893 1.32347 1.20076 0.99279 0.95373 0.95118 1.22818 0.91054 0.95840 0.98525 1.21266 1.00731 0.94986 0.97566 1.19395 0.99432 0.94516 0.96473 1.21336 0.98532 0.94545 0.96250 0.86573 1.21892 0.91196 1.03030 1.04524 1.20597 0.75308 0.78854 0.85214 1.93195 1.32114 1.94663 1.96155 1.93153 1.79532 1.47530 1.96824 1.93174 1.93692 1.79555 1.49223 1.20703 0.98300 0.97250 0.97921 1.21162 0.98071 0.92835 0.97740 0.91990 0.93079 0.92458 0.92323 0.91399 0.91111 0.80511 0.85421 0.91318 0.90135 0.90811 0.86262 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 10.24 37.16 0.38 -2.61 16 2 C 0.10 2.18 4.56 -4.04 -0.02 2.16 16 3 N -0.46 -10.87 2.11 -115.92 -0.24 -11.11 16 4 C -0.34 -8.30 6.28 -15.00 -0.09 -8.40 16 5 H 0.11 2.85 7.38 -52.49 -0.39 2.46 16 6 C 0.06 1.53 4.82 -17.45 -0.08 1.45 16 7 N -0.86 -22.19 13.95 55.50 0.77 -21.42 16 8 Si 0.88 19.51 24.67 -169.99 -4.19 15.31 16 9 H -0.27 -5.84 6.93 56.52 0.39 -5.45 16 10 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.26 -5.81 6.78 56.52 0.38 -5.43 16 12 C 0.52 12.27 7.43 -12.38 -0.09 12.18 16 13 O -0.59 -14.77 16.25 5.28 0.09 -14.69 16 14 C -0.10 -2.01 5.66 -104.97 -0.59 -2.60 16 15 C -0.06 -1.31 8.19 -39.17 -0.32 -1.64 16 16 C -0.13 -2.20 8.35 -39.64 -0.33 -2.53 16 17 C -0.10 -1.45 4.53 -104.52 -0.47 -1.92 16 18 C -0.09 -1.01 2.60 -91.77 -0.24 -1.25 16 19 H 0.12 1.07 7.87 -51.93 -0.41 0.66 16 20 C -0.15 -1.46 8.76 37.16 0.33 -1.13 16 21 C 0.45 6.02 2.67 37.16 0.10 6.12 16 22 F -0.18 -2.68 17.02 2.25 0.04 -2.65 16 23 F -0.19 -2.32 16.80 2.25 0.04 -2.29 16 24 F -0.18 -2.61 14.19 2.25 0.03 -2.58 16 25 C -0.12 -1.85 9.65 -39.64 -0.38 -2.24 16 26 C -0.08 -1.42 9.59 -39.17 -0.38 -1.80 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 1.27 3.29 -51.93 -0.17 1.10 16 31 H 0.07 1.44 7.59 -51.93 -0.39 1.05 16 32 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.18 4.00 4.60 -52.49 -0.24 3.76 16 34 H 0.13 2.08 5.88 -52.49 -0.31 1.78 16 35 H 0.07 0.56 7.80 -51.93 -0.41 0.16 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.78 7.03 -51.93 -0.37 0.41 16 38 H 0.12 1.40 7.94 -52.48 -0.42 0.98 16 39 H 0.13 2.22 7.79 -52.48 -0.41 1.81 16 LS Contribution 327.17 15.07 4.93 4.93 Total: -1.00 -27.59 327.17 -5.10 -32.69 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -4.36 Total: 6.00 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -2.20 Total: -4.20 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.53 Total: -32.53 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.09 Total: -14.69 kcal Atomic # 9 Polarization: -7.62 SS G_CDS: 0.11 Total: -7.51 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.19 Total: 15.31 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.59 -5.10 -32.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454992171.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.195 kcal (2) G-P(sol) polarization free energy of solvation -27.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds