Wall clock time and date at job start Tue Mar 31 2020 11:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46509 * 109.47038 * 2 1 4 4 C 1.36866 * 119.99841 * 270.59736 * 3 2 1 5 5 H 1.07994 * 119.99702 * 134.37566 * 4 3 2 6 6 C 1.39051 * 119.99984 * 314.37324 * 4 3 2 7 7 N 1.31366 * 119.99797 * 171.87066 * 6 4 3 8 8 Si 1.86800 * 120.00291 * 351.87212 * 6 4 3 9 9 H 1.48499 * 109.47095 * 95.55391 * 8 6 4 10 10 H 1.48495 * 109.47210 * 215.55491 * 8 6 4 11 11 H 1.48501 * 109.46870 * 335.55247 * 8 6 4 12 12 C 1.34772 * 119.99696 * 90.60339 * 3 2 1 13 13 O 1.21595 * 120.00316 * 348.59134 * 12 3 2 14 14 C 1.47730 * 119.99771 * 168.32612 * 12 3 2 15 15 C 1.39646 * 120.14573 * 339.81948 * 14 12 3 16 16 C 1.37941 * 119.84124 * 179.72487 * 15 14 12 17 17 C 1.38378 * 120.15106 * 0.55793 * 16 15 14 18 18 C 1.50704 * 119.84696 * 179.70164 * 17 16 15 19 19 H 1.08998 * 109.47036 * 180.02562 * 18 17 16 20 20 C 1.53002 * 109.46660 * 300.01856 * 18 17 16 21 21 C 1.52998 * 109.47088 * 60.01603 * 18 17 16 22 22 F 1.39890 * 109.47301 * 60.00595 * 21 18 17 23 23 F 1.39909 * 109.46762 * 180.02562 * 21 18 17 24 24 F 1.39901 * 109.47394 * 299.99997 * 21 18 17 25 25 C 1.38375 * 120.30497 * 359.71581 * 17 16 15 26 26 C 1.37932 * 120.15000 * 0.02562 * 25 17 16 27 27 H 1.09003 * 109.46893 * 59.99974 * 1 2 3 28 28 H 1.08993 * 109.46720 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46835 * 300.00143 * 1 2 3 30 30 H 1.08998 * 109.47529 * 239.99778 * 2 1 3 31 31 H 1.09005 * 109.46963 * 119.99489 * 2 1 3 32 32 H 0.96996 * 119.99529 * 180.02562 * 7 6 4 33 33 H 1.07996 * 120.08062 * 359.97438 * 15 14 12 34 34 H 1.07997 * 119.92361 * 180.29581 * 16 15 14 35 35 H 1.08999 * 109.46857 * 180.02562 * 20 18 17 36 36 H 1.08998 * 109.47483 * 299.99652 * 20 18 17 37 37 H 1.09000 * 109.47564 * 60.00205 * 20 18 17 38 38 H 1.08004 * 119.92206 * 179.97438 * 25 17 16 39 39 H 1.08003 * 120.07214 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2348 2.0306 -1.1853 5 1 1.8820 3.0425 -1.3188 6 6 2.9090 1.3874 -2.2173 7 7 2.9780 1.9451 -3.4047 8 14 3.7166 -0.2698 -1.9155 9 1 2.7928 -1.3543 -2.3346 10 1 4.9732 -0.3586 -2.7016 11 1 4.0257 -0.4138 -0.4701 12 6 2.2545 2.0125 1.1671 13 8 1.8719 1.5220 2.2119 14 6 2.9835 3.2974 1.1777 15 6 3.7838 3.6585 0.0918 16 6 4.4572 4.8623 0.1057 17 6 4.3502 5.7060 1.1974 18 6 5.0942 7.0165 1.2083 19 1 4.8912 7.5418 2.1415 20 6 6.5963 6.7511 1.0888 21 6 4.6326 7.8748 0.0289 22 9 3.2593 8.1175 0.1381 23 9 5.3238 9.0912 0.0387 24 9 4.8933 7.2006 -1.1689 25 6 3.5634 5.3516 2.2792 26 6 2.8804 4.1533 2.2761 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.4480 1.4962 -4.1247 33 1 3.8721 2.9988 -0.7587 34 1 5.0727 5.1451 -0.7354 35 1 7.1345 7.6989 1.0972 36 1 6.9252 6.1396 1.9290 37 1 6.7994 6.2257 0.1556 38 1 3.4847 6.0146 3.1282 39 1 2.2664 3.8782 3.1210 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454992171.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:46 Heat of formation + Delta-G solvation = -169.091968 kcal Electronic energy + Delta-G solvation = -27166.304534 eV Core-core repulsion = 22851.674080 eV Total energy + Delta-G solvation = -4314.630454 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.08463 -48.57490 -48.55381 -41.30522 -39.67729 -37.15274 -35.76567 -34.22317 -32.45542 -31.57488 -30.33919 -27.32629 -27.05175 -25.42407 -23.97111 -23.48862 -22.08507 -21.04947 -19.48412 -19.43490 -19.32922 -18.38397 -18.09271 -17.38652 -16.77367 -16.16286 -15.98157 -15.72545 -15.47100 -15.39404 -15.12655 -14.96105 -14.87173 -14.72477 -14.68108 -14.53637 -14.29009 -14.13672 -14.06187 -13.78548 -13.74437 -13.25582 -13.14106 -12.85823 -12.80852 -12.56534 -12.35568 -12.12636 -11.98178 -11.82179 -11.55917 -11.09753 -10.57727 -9.86737 -9.71130 -9.65829 -8.51145 -6.21786 -0.07569 0.56338 1.18852 1.30541 1.39354 1.73848 2.01535 2.14053 2.56441 2.74334 2.87696 2.99030 3.06255 3.19598 3.71063 3.90426 3.95645 4.09083 4.14344 4.17703 4.29297 4.34364 4.44613 4.56778 4.67677 4.77374 4.78806 4.87632 4.95118 5.01325 5.20042 5.23828 5.24495 5.43102 5.47116 5.57843 5.71232 5.99241 6.06958 6.21527 6.88045 7.29109 7.66682 8.59721 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.004558 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.398268 B = 6141.578675 C = 6906.223731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.091 3.909 3 N -0.471 5.471 4 C -0.325 4.325 5 H 0.075 0.925 6 C 0.032 3.968 7 N -0.893 5.893 8 Si 0.930 3.070 9 H -0.256 1.256 10 H -0.283 1.283 11 H -0.267 1.267 12 C 0.514 3.486 13 O -0.612 6.612 14 C -0.130 4.130 15 C -0.083 4.083 16 C -0.131 4.131 17 C -0.082 4.082 18 C -0.081 4.081 19 H 0.154 0.846 20 C -0.149 4.149 21 C 0.451 3.549 22 F -0.192 7.192 23 F -0.181 7.181 24 F -0.190 7.190 25 C -0.108 4.108 26 C -0.082 4.082 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.282 0.718 33 H 0.148 0.852 34 H 0.132 0.868 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.166 0.834 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.676 9.217 7.797 13.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 N -0.191 5.191 4 C -0.453 4.453 5 H 0.093 0.907 6 C -0.173 4.173 7 N -0.529 5.529 8 Si 0.756 3.244 9 H -0.182 1.182 10 H -0.210 1.210 11 H -0.192 1.192 12 C 0.306 3.694 13 O -0.499 6.499 14 C -0.133 4.133 15 C -0.101 4.101 16 C -0.149 4.149 17 C -0.082 4.082 18 C -0.100 4.100 19 H 0.172 0.828 20 C -0.206 4.206 21 C 0.397 3.603 22 F -0.173 7.173 23 F -0.162 7.162 24 F -0.171 7.171 25 C -0.126 4.126 26 C -0.101 4.101 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.165 0.835 34 H 0.150 0.850 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.184 0.816 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.517 8.952 8.023 13.674 hybrid contribution -0.086 -0.753 -0.887 1.167 sum 6.431 8.199 7.136 12.629 Atomic orbital electron populations 1.21924 0.94382 1.02760 1.01521 1.21775 0.96471 0.84310 1.00500 1.43699 1.57632 1.12523 1.05270 1.18703 1.36511 1.00597 0.89475 0.90706 1.25929 0.95706 1.01053 0.94633 1.69710 1.40697 1.40549 1.01916 0.86044 0.78687 0.80810 0.78851 1.18192 1.20985 1.19161 1.18850 0.80864 0.86704 0.83016 1.90580 1.56841 1.69725 1.32778 1.20050 1.00770 0.95492 0.96941 1.22472 0.92816 0.97023 0.97769 1.21335 1.00501 0.94248 0.98842 1.19717 0.98207 0.95228 0.95074 1.21482 0.99082 0.92378 0.97018 0.82842 1.21940 0.89843 1.04346 1.04485 1.20890 0.74860 0.79337 0.85251 1.93177 1.33185 1.94781 1.96172 1.93169 1.79222 1.47046 1.96770 1.93152 1.93726 1.79905 1.50347 1.21153 0.96123 0.96281 0.99046 1.21329 0.98504 0.93558 0.96717 0.92962 0.89503 0.93376 0.92233 0.91234 0.90752 0.83523 0.84990 0.89194 0.88781 0.92092 0.81615 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.57 10.24 71.98 0.74 -4.83 16 2 C 0.09 3.95 4.56 86.38 0.39 4.35 16 3 N -0.47 -22.83 2.11 -638.92 -1.35 -24.18 16 4 C -0.32 -16.71 6.28 84.10 0.53 -16.18 16 5 H 0.08 4.27 7.38 -2.91 -0.02 4.25 16 6 C 0.03 1.62 4.82 84.96 0.41 2.03 16 7 N -0.89 -47.70 13.95 21.68 0.30 -47.40 16 8 Si 0.93 40.51 24.67 68.60 1.69 42.20 16 9 H -0.26 -10.46 6.93 99.48 0.69 -9.77 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.27 -11.82 6.78 99.48 0.67 -11.14 16 12 C 0.51 24.87 7.43 86.75 0.64 25.52 16 13 O -0.61 -31.04 16.25 -4.02 -0.07 -31.11 16 14 C -0.13 -5.56 5.66 -20.09 -0.11 -5.67 16 15 C -0.08 -3.48 8.19 22.54 0.18 -3.29 16 16 C -0.13 -4.51 8.35 22.23 0.19 -4.32 16 17 C -0.08 -2.22 4.53 -19.80 -0.09 -2.31 16 18 C -0.08 -1.56 2.60 -11.54 -0.03 -1.59 16 19 H 0.15 1.92 7.87 -2.39 -0.02 1.90 16 20 C -0.15 -2.37 8.76 71.98 0.63 -1.74 16 21 C 0.45 10.83 2.67 71.98 0.19 11.02 16 22 F -0.19 -5.32 17.02 44.97 0.77 -4.56 16 23 F -0.18 -3.92 16.80 44.97 0.76 -3.16 16 24 F -0.19 -5.48 14.19 44.97 0.64 -4.84 16 25 C -0.11 -2.89 9.65 22.23 0.21 -2.68 16 26 C -0.08 -2.86 9.59 22.54 0.22 -2.65 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 2.54 3.29 -2.39 -0.01 2.53 16 31 H 0.07 2.95 7.59 -2.38 -0.02 2.93 16 32 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 33 H 0.15 7.05 4.60 -2.91 -0.01 7.04 16 34 H 0.13 4.35 5.88 -2.91 -0.02 4.33 16 35 H 0.09 1.09 7.80 -2.39 -0.02 1.08 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.15 7.03 -2.39 -0.02 1.13 16 38 H 0.17 2.93 7.94 -2.91 -0.02 2.91 16 39 H 0.13 4.42 7.79 -2.91 -0.02 4.40 16 Total: -1.00 -62.04 327.17 7.89 -54.15 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 1.04 Total: 21.24 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 4.10 Total: -2.35 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -1.04 Total: -71.58 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.07 Total: -31.11 kcal Atomic # 9 Polarization: -14.72 SS G_CDS: 2.16 Total: -12.56 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 1.69 Total: 42.20 kcal Total: -62.04 7.89 -54.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454992171.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.940 kcal (2) G-P(sol) polarization free energy of solvation -62.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds