Wall clock time and date at job start Tue Mar 31 2020 11:20:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46509 * 109.47038 * 2 1
4 4 C 1.36866 * 119.99841 * 270.59736 * 3 2 1
5 5 H 1.07994 * 119.99702 * 134.37566 * 4 3 2
6 6 C 1.39051 * 119.99984 * 314.37324 * 4 3 2
7 7 N 1.31366 * 119.99797 * 171.87066 * 6 4 3
8 8 Si 1.86800 * 120.00291 * 351.87212 * 6 4 3
9 9 H 1.48499 * 109.47095 * 95.55391 * 8 6 4
10 10 H 1.48495 * 109.47210 * 215.55491 * 8 6 4
11 11 H 1.48501 * 109.46870 * 335.55247 * 8 6 4
12 12 C 1.34772 * 119.99696 * 90.60339 * 3 2 1
13 13 O 1.21595 * 120.00316 * 348.59134 * 12 3 2
14 14 C 1.47730 * 119.99771 * 168.32612 * 12 3 2
15 15 C 1.39646 * 120.14573 * 339.81948 * 14 12 3
16 16 C 1.37941 * 119.84124 * 179.72487 * 15 14 12
17 17 C 1.38378 * 120.15106 * 0.55793 * 16 15 14
18 18 C 1.50704 * 119.84696 * 179.70164 * 17 16 15
19 19 H 1.08998 * 109.47036 * 180.02562 * 18 17 16
20 20 C 1.53002 * 109.46660 * 300.01856 * 18 17 16
21 21 C 1.52998 * 109.47088 * 60.01603 * 18 17 16
22 22 F 1.39890 * 109.47301 * 60.00595 * 21 18 17
23 23 F 1.39909 * 109.46762 * 180.02562 * 21 18 17
24 24 F 1.39901 * 109.47394 * 299.99997 * 21 18 17
25 25 C 1.38375 * 120.30497 * 359.71581 * 17 16 15
26 26 C 1.37932 * 120.15000 * 0.02562 * 25 17 16
27 27 H 1.09003 * 109.46893 * 59.99974 * 1 2 3
28 28 H 1.08993 * 109.46720 * 179.97438 * 1 2 3
29 29 H 1.09003 * 109.46835 * 300.00143 * 1 2 3
30 30 H 1.08998 * 109.47529 * 239.99778 * 2 1 3
31 31 H 1.09005 * 109.46963 * 119.99489 * 2 1 3
32 32 H 0.96996 * 119.99529 * 180.02562 * 7 6 4
33 33 H 1.07996 * 120.08062 * 359.97438 * 15 14 12
34 34 H 1.07997 * 119.92361 * 180.29581 * 16 15 14
35 35 H 1.08999 * 109.46857 * 180.02562 * 20 18 17
36 36 H 1.08998 * 109.47483 * 299.99652 * 20 18 17
37 37 H 1.09000 * 109.47564 * 60.00205 * 20 18 17
38 38 H 1.08004 * 119.92206 * 179.97438 * 25 17 16
39 39 H 1.08003 * 120.07214 * 180.02562 * 26 25 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3813 0.0000
4 6 2.2348 2.0306 -1.1853
5 1 1.8820 3.0425 -1.3188
6 6 2.9090 1.3874 -2.2173
7 7 2.9780 1.9451 -3.4047
8 14 3.7166 -0.2698 -1.9155
9 1 2.7928 -1.3543 -2.3346
10 1 4.9732 -0.3586 -2.7016
11 1 4.0257 -0.4138 -0.4701
12 6 2.2545 2.0125 1.1671
13 8 1.8719 1.5220 2.2119
14 6 2.9835 3.2974 1.1777
15 6 3.7838 3.6585 0.0918
16 6 4.4572 4.8623 0.1057
17 6 4.3502 5.7060 1.1974
18 6 5.0942 7.0165 1.2083
19 1 4.8912 7.5418 2.1415
20 6 6.5963 6.7511 1.0888
21 6 4.6326 7.8748 0.0289
22 9 3.2593 8.1175 0.1381
23 9 5.3238 9.0912 0.0387
24 9 4.8933 7.2006 -1.1689
25 6 3.5634 5.3516 2.2792
26 6 2.8804 4.1533 2.2761
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3632 -1.0276 -0.0005
29 1 -0.3633 0.5139 0.8900
30 1 1.8934 -0.5138 -0.8899
31 1 1.8933 -0.5138 0.8901
32 1 3.4480 1.4962 -4.1247
33 1 3.8721 2.9988 -0.7587
34 1 5.0727 5.1451 -0.7354
35 1 7.1345 7.6989 1.0972
36 1 6.9252 6.1396 1.9290
37 1 6.7994 6.2257 0.1556
38 1 3.4847 6.0146 3.1282
39 1 2.2664 3.8782 3.1210
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000454992171.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:20:46
Heat of formation + Delta-G solvation = -169.091968 kcal
Electronic energy + Delta-G solvation = -27166.304534 eV
Core-core repulsion = 22851.674080 eV
Total energy + Delta-G solvation = -4314.630454 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.119 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-51.08463 -48.57490 -48.55381 -41.30522 -39.67729 -37.15274 -35.76567 -34.22317
-32.45542 -31.57488 -30.33919 -27.32629 -27.05175 -25.42407 -23.97111 -23.48862
-22.08507 -21.04947 -19.48412 -19.43490 -19.32922 -18.38397 -18.09271 -17.38652
-16.77367 -16.16286 -15.98157 -15.72545 -15.47100 -15.39404 -15.12655 -14.96105
-14.87173 -14.72477 -14.68108 -14.53637 -14.29009 -14.13672 -14.06187 -13.78548
-13.74437 -13.25582 -13.14106 -12.85823 -12.80852 -12.56534 -12.35568 -12.12636
-11.98178 -11.82179 -11.55917 -11.09753 -10.57727 -9.86737 -9.71130 -9.65829
-8.51145 -6.21786 -0.07569 0.56338 1.18852 1.30541 1.39354 1.73848
2.01535 2.14053 2.56441 2.74334 2.87696 2.99030 3.06255 3.19598
3.71063 3.90426 3.95645 4.09083 4.14344 4.17703 4.29297 4.34364
4.44613 4.56778 4.67677 4.77374 4.78806 4.87632 4.95118 5.01325
5.20042 5.23828 5.24495 5.43102 5.47116 5.57843 5.71232 5.99241
6.06958 6.21527 6.88045 7.29109 7.66682 8.59721
Molecular weight = 315.12amu
Principal moments of inertia in cm(-1)
A = 0.017524 B = 0.004558 C = 0.004053
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1597.398268 B = 6141.578675 C = 6906.223731
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.091 3.909
3 N -0.471 5.471
4 C -0.325 4.325
5 H 0.075 0.925
6 C 0.032 3.968
7 N -0.893 5.893
8 Si 0.930 3.070
9 H -0.256 1.256
10 H -0.283 1.283
11 H -0.267 1.267
12 C 0.514 3.486
13 O -0.612 6.612
14 C -0.130 4.130
15 C -0.083 4.083
16 C -0.131 4.131
17 C -0.082 4.082
18 C -0.081 4.081
19 H 0.154 0.846
20 C -0.149 4.149
21 C 0.451 3.549
22 F -0.192 7.192
23 F -0.181 7.181
24 F -0.190 7.190
25 C -0.108 4.108
26 C -0.082 4.082
27 H 0.051 0.949
28 H 0.086 0.914
29 H 0.047 0.953
30 H 0.060 0.940
31 H 0.069 0.931
32 H 0.282 0.718
33 H 0.148 0.852
34 H 0.132 0.868
35 H 0.089 0.911
36 H 0.093 0.907
37 H 0.060 0.940
38 H 0.166 0.834
39 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.676 9.217 7.797 13.795
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.031 4.031
3 N -0.191 5.191
4 C -0.453 4.453
5 H 0.093 0.907
6 C -0.173 4.173
7 N -0.529 5.529
8 Si 0.756 3.244
9 H -0.182 1.182
10 H -0.210 1.210
11 H -0.192 1.192
12 C 0.306 3.694
13 O -0.499 6.499
14 C -0.133 4.133
15 C -0.101 4.101
16 C -0.149 4.149
17 C -0.082 4.082
18 C -0.100 4.100
19 H 0.172 0.828
20 C -0.206 4.206
21 C 0.397 3.603
22 F -0.173 7.173
23 F -0.162 7.162
24 F -0.171 7.171
25 C -0.126 4.126
26 C -0.101 4.101
27 H 0.070 0.930
28 H 0.105 0.895
29 H 0.066 0.934
30 H 0.078 0.922
31 H 0.088 0.912
32 H 0.092 0.908
33 H 0.165 0.835
34 H 0.150 0.850
35 H 0.108 0.892
36 H 0.112 0.888
37 H 0.079 0.921
38 H 0.184 0.816
39 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 6.517 8.952 8.023 13.674
hybrid contribution -0.086 -0.753 -0.887 1.167
sum 6.431 8.199 7.136 12.629
Atomic orbital electron populations
1.21924 0.94382 1.02760 1.01521 1.21775 0.96471 0.84310 1.00500
1.43699 1.57632 1.12523 1.05270 1.18703 1.36511 1.00597 0.89475
0.90706 1.25929 0.95706 1.01053 0.94633 1.69710 1.40697 1.40549
1.01916 0.86044 0.78687 0.80810 0.78851 1.18192 1.20985 1.19161
1.18850 0.80864 0.86704 0.83016 1.90580 1.56841 1.69725 1.32778
1.20050 1.00770 0.95492 0.96941 1.22472 0.92816 0.97023 0.97769
1.21335 1.00501 0.94248 0.98842 1.19717 0.98207 0.95228 0.95074
1.21482 0.99082 0.92378 0.97018 0.82842 1.21940 0.89843 1.04346
1.04485 1.20890 0.74860 0.79337 0.85251 1.93177 1.33185 1.94781
1.96172 1.93169 1.79222 1.47046 1.96770 1.93152 1.93726 1.79905
1.50347 1.21153 0.96123 0.96281 0.99046 1.21329 0.98504 0.93558
0.96717 0.92962 0.89503 0.93376 0.92233 0.91234 0.90752 0.83523
0.84990 0.89194 0.88781 0.92092 0.81615 0.85101
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.57 10.24 71.98 0.74 -4.83 16
2 C 0.09 3.95 4.56 86.38 0.39 4.35 16
3 N -0.47 -22.83 2.11 -638.92 -1.35 -24.18 16
4 C -0.32 -16.71 6.28 84.10 0.53 -16.18 16
5 H 0.08 4.27 7.38 -2.91 -0.02 4.25 16
6 C 0.03 1.62 4.82 84.96 0.41 2.03 16
7 N -0.89 -47.70 13.95 21.68 0.30 -47.40 16
8 Si 0.93 40.51 24.67 68.60 1.69 42.20 16
9 H -0.26 -10.46 6.93 99.48 0.69 -9.77 16
10 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16
11 H -0.27 -11.82 6.78 99.48 0.67 -11.14 16
12 C 0.51 24.87 7.43 86.75 0.64 25.52 16
13 O -0.61 -31.04 16.25 -4.02 -0.07 -31.11 16
14 C -0.13 -5.56 5.66 -20.09 -0.11 -5.67 16
15 C -0.08 -3.48 8.19 22.54 0.18 -3.29 16
16 C -0.13 -4.51 8.35 22.23 0.19 -4.32 16
17 C -0.08 -2.22 4.53 -19.80 -0.09 -2.31 16
18 C -0.08 -1.56 2.60 -11.54 -0.03 -1.59 16
19 H 0.15 1.92 7.87 -2.39 -0.02 1.90 16
20 C -0.15 -2.37 8.76 71.98 0.63 -1.74 16
21 C 0.45 10.83 2.67 71.98 0.19 11.02 16
22 F -0.19 -5.32 17.02 44.97 0.77 -4.56 16
23 F -0.18 -3.92 16.80 44.97 0.76 -3.16 16
24 F -0.19 -5.48 14.19 44.97 0.64 -4.84 16
25 C -0.11 -2.89 9.65 22.23 0.21 -2.68 16
26 C -0.08 -2.86 9.59 22.54 0.22 -2.65 16
27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16
28 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16
29 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16
30 H 0.06 2.54 3.29 -2.39 -0.01 2.53 16
31 H 0.07 2.95 7.59 -2.38 -0.02 2.93 16
32 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16
33 H 0.15 7.05 4.60 -2.91 -0.01 7.04 16
34 H 0.13 4.35 5.88 -2.91 -0.02 4.33 16
35 H 0.09 1.09 7.80 -2.39 -0.02 1.08 16
36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16
37 H 0.06 1.15 7.03 -2.39 -0.02 1.13 16
38 H 0.17 2.93 7.94 -2.91 -0.02 2.91 16
39 H 0.13 4.42 7.79 -2.91 -0.02 4.40 16
Total: -1.00 -62.04 327.17 7.89 -54.15
By element:
Atomic # 1 Polarization: 20.19 SS G_CDS: 1.04 Total: 21.24 kcal
Atomic # 6 Polarization: -6.45 SS G_CDS: 4.10 Total: -2.35 kcal
Atomic # 7 Polarization: -70.53 SS G_CDS: -1.04 Total: -71.58 kcal
Atomic # 8 Polarization: -31.04 SS G_CDS: -0.07 Total: -31.11 kcal
Atomic # 9 Polarization: -14.72 SS G_CDS: 2.16 Total: -12.56 kcal
Atomic # 14 Polarization: 40.51 SS G_CDS: 1.69 Total: 42.20 kcal
Total: -62.04 7.89 -54.15 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000454992171.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -114.940 kcal
(2) G-P(sol) polarization free energy of solvation -62.041 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.982 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.890 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.152 kcal
(6) G-S(sol) free energy of system = (1) + (5) -169.092 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds