Wall clock time and date at job start Tue Mar 31 2020 11:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46677 * 2 1 4 4 C 1.50703 * 109.47047 * 240.00344 * 2 1 3 5 5 C 1.38361 * 119.85291 * 120.00317 * 4 2 1 6 6 C 1.37950 * 120.14138 * 180.02562 * 5 4 2 7 7 C 1.39578 * 119.85642 * 359.96824 * 6 5 4 8 8 C 1.47850 * 120.14408 * 179.97438 * 7 6 5 9 9 O 1.21553 * 120.00185 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99831 * 179.72562 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27510 * 10 8 7 12 12 C 1.52997 * 109.47551 * 180.02562 * 11 10 8 13 13 C 1.50694 * 109.47456 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99649 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99902 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00351 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99771 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47118 * 60.00127 * 17 15 13 19 19 H 1.48498 * 109.47326 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47374 * 300.00233 * 17 15 13 21 21 C 1.39575 * 119.71081 * 0.26275 * 7 6 5 22 22 C 1.37959 * 119.85210 * 359.50582 * 21 7 6 23 23 C 1.52996 * 109.47235 * 119.99974 * 2 1 3 24 24 F 1.39897 * 109.47296 * 180.02562 * 23 2 1 25 25 F 1.39900 * 109.47358 * 300.00399 * 23 2 1 26 26 F 1.39901 * 109.47141 * 60.00127 * 23 2 1 27 27 H 1.08995 * 109.47256 * 299.99697 * 1 2 3 28 28 H 1.09001 * 109.47387 * 60.00189 * 1 2 3 29 29 H 1.09001 * 109.47135 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.92818 * 0.02562 * 5 4 2 31 31 H 1.08007 * 120.07425 * 179.97438 * 6 5 4 32 32 H 0.97001 * 119.99727 * 0.28406 * 10 8 7 33 33 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 34 34 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 35 35 H 1.09007 * 109.46479 * 300.00271 * 12 11 10 36 36 H 1.09003 * 109.47114 * 59.99483 * 12 11 10 37 37 H 0.96991 * 119.99882 * 180.02562 * 16 15 13 38 38 H 1.07998 * 120.07249 * 179.72483 * 21 7 6 39 39 H 1.07998 * 119.93004 * 180.23392 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.8277 -0.0350 -2.1392 6 6 3.2903 -0.6793 -3.2679 7 6 2.9550 -2.0155 -3.4918 8 6 3.4469 -2.7121 -4.6996 9 8 4.1453 -2.1212 -5.5000 10 7 3.1259 -4.0040 -4.9101 11 6 3.6183 -4.6960 -6.1039 12 6 3.1126 -6.1400 -6.1014 13 6 3.6195 -6.8520 -7.3289 14 1 4.2400 -6.3269 -8.0400 15 6 3.2912 -8.1737 -7.5442 16 7 2.5361 -8.8132 -6.6780 17 14 3.9191 -9.0560 -9.0663 18 1 5.4041 -9.0510 -9.0641 19 1 3.4294 -10.4579 -9.0632 20 1 3.4236 -8.3608 -10.2813 21 6 2.1484 -2.6896 -2.5736 22 6 1.6962 -2.0350 -1.4465 23 6 2.0400 -0.7212 1.2492 24 9 3.4390 -0.7207 1.2495 25 9 1.5737 -0.0618 2.3915 26 9 1.5737 -2.0402 1.2492 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.0868 0.9988 -1.9645 31 1 3.9107 -0.1509 -3.9767 32 1 2.5688 -4.4756 -4.2713 33 1 3.2546 -4.1856 -6.9956 34 1 4.7083 -4.6924 -6.1023 35 1 3.4760 -6.6506 -5.2095 36 1 2.0225 -6.1433 -6.1031 37 1 2.3055 -9.7431 -6.8293 38 1 1.8817 -3.7223 -2.7433 39 1 1.0751 -2.5565 -0.7333 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455998394.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:16 Heat of formation + Delta-G solvation = -184.244703 kcal Electronic energy + Delta-G solvation = -25383.387461 eV Core-core repulsion = 21068.099934 eV Total energy + Delta-G solvation = -4315.287526 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.45230 -47.94968 -47.89024 -40.23509 -38.64457 -35.19821 -34.95810 -32.93210 -31.32827 -30.50944 -29.23202 -26.81473 -25.24108 -23.85196 -22.99760 -21.71950 -21.01305 -20.19789 -18.84246 -18.75034 -17.96649 -17.62135 -16.56917 -16.06234 -15.39557 -15.08549 -14.99074 -14.84714 -14.68870 -14.53195 -14.40191 -14.32366 -14.11389 -14.06967 -13.77312 -13.56077 -13.41876 -13.26714 -13.07395 -12.67205 -12.32629 -12.27349 -11.86431 -11.62798 -11.26028 -11.15950 -11.04007 -10.67969 -10.36479 -9.91764 -9.53509 -9.27108 -9.23084 -9.11341 -8.57676 -8.38445 -6.11206 -4.14306 0.57522 1.13985 2.36758 2.90685 3.30221 3.34095 3.36594 3.42139 3.51050 3.58529 3.64689 3.84517 4.24812 4.38704 4.40207 4.51504 4.69835 4.74901 4.93105 5.09813 5.11652 5.16637 5.25850 5.32823 5.51841 5.57312 5.75295 6.03471 6.11680 6.16034 6.30456 6.33543 6.59645 6.69077 6.83076 7.47933 7.57963 7.86281 7.92119 8.24588 8.53673 8.91253 9.50643 11.00390 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.024906 B = 0.002353 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.966352 B =11898.153924 C =12520.066745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 H 0.123 0.877 4 C -0.085 4.085 5 C -0.108 4.108 6 C -0.062 4.062 7 C -0.115 4.115 8 C 0.545 3.455 9 O -0.545 6.545 10 N -0.714 5.714 11 C 0.121 3.879 12 C 0.012 3.988 13 C -0.523 4.523 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.084 4.084 22 C -0.114 4.114 23 C 0.455 3.545 24 F -0.179 7.179 25 F -0.184 7.184 26 F -0.178 7.178 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.131 0.869 31 H 0.140 0.860 32 H 0.397 0.603 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.263 0.737 38 H 0.134 0.866 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.345 19.497 17.917 27.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 H 0.141 0.859 4 C -0.086 4.086 5 C -0.126 4.126 6 C -0.081 4.081 7 C -0.118 4.118 8 C 0.332 3.668 9 O -0.425 6.425 10 N -0.364 5.364 11 C -0.001 4.001 12 C -0.025 4.025 13 C -0.562 4.562 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.103 4.103 22 C -0.132 4.132 23 C 0.401 3.599 24 F -0.160 7.160 25 F -0.165 7.165 26 F -0.160 7.160 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.149 0.851 31 H 0.158 0.842 32 H 0.232 0.768 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.152 0.848 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.910 19.677 17.377 26.707 hybrid contribution 0.134 -0.993 -0.225 1.027 sum -4.776 18.684 17.152 25.809 Atomic orbital electron populations 1.21918 0.90419 1.04335 1.04168 1.21405 0.99779 1.00919 0.89000 0.85940 1.19482 0.99120 0.94606 0.95362 1.20955 0.97383 1.00146 0.94071 1.21275 0.97160 0.93175 0.96524 1.20267 1.00156 0.95322 0.96063 1.18273 0.80826 0.82326 0.85422 1.90747 1.38446 1.66443 1.46818 1.46296 1.52355 1.11063 1.26686 1.21787 0.98656 0.94950 0.84738 1.19328 0.96989 0.87997 0.98189 1.21001 1.32104 0.96178 1.06873 0.92258 1.24994 0.94977 0.97482 0.96797 1.69939 1.36655 1.10983 1.35712 0.86561 0.79300 0.78502 0.83109 1.20094 1.21229 1.20093 1.21406 0.95564 1.00109 0.93177 1.21168 1.00304 0.93878 0.97819 1.20526 0.75796 0.77883 0.85654 1.93213 1.29685 1.96373 1.96764 1.93180 1.88506 1.80752 1.54057 1.93153 1.88399 1.37826 1.96575 0.90812 0.89860 0.90791 0.85117 0.84217 0.76794 0.92304 0.92296 0.95887 0.95896 0.92752 0.84836 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 8.76 37.16 0.33 -0.44 16 2 C -0.09 -0.59 2.60 -91.77 -0.24 -0.83 16 3 H 0.12 0.54 7.87 -51.93 -0.41 0.14 16 4 C -0.09 -0.74 4.53 -104.53 -0.47 -1.21 16 5 C -0.11 -0.97 9.65 -39.64 -0.38 -1.36 16 6 C -0.06 -0.74 9.60 -39.19 -0.38 -1.11 16 7 C -0.11 -1.56 5.87 -104.97 -0.62 -2.17 16 8 C 0.55 9.47 7.77 -12.33 -0.10 9.37 16 9 O -0.55 -11.28 16.35 5.32 0.09 -11.19 16 10 N -0.71 -12.53 5.51 -61.25 -0.34 -12.87 16 11 C 0.12 2.55 5.61 -4.04 -0.02 2.53 16 12 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 13 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 17 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.08 -0.95 9.54 -39.19 -0.37 -1.32 16 22 C -0.11 -1.10 8.35 -39.64 -0.33 -1.43 16 23 C 0.46 3.79 2.67 37.16 0.10 3.89 16 24 F -0.18 -1.79 17.03 2.25 0.04 -1.76 16 25 F -0.18 -1.52 16.80 2.25 0.04 -1.48 16 26 F -0.18 -1.64 14.19 2.25 0.03 -1.61 16 27 H 0.07 0.31 7.80 -51.93 -0.41 -0.10 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.40 7.04 -51.93 -0.37 0.04 16 30 H 0.13 0.82 7.94 -52.49 -0.42 0.40 16 31 H 0.14 1.66 7.65 -52.48 -0.40 1.25 16 32 H 0.40 5.99 6.51 -40.82 -0.27 5.73 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.13 1.35 6.41 -52.49 -0.34 1.01 16 39 H 0.14 1.13 5.88 -52.49 -0.31 0.83 16 LS Contribution 342.47 15.07 5.16 5.16 Total: -1.00 -31.95 342.47 -6.87 -38.82 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -4.56 Total: 0.99 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -3.04 Total: -7.10 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.40 Total: -38.10 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.11 Total: -4.85 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.95 -6.87 -38.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455998394.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.427 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds