Wall clock time and date at job start Tue Mar 31 2020 11:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46677 * 2 1 4 4 C 1.50703 * 109.47047 * 240.00344 * 2 1 3 5 5 C 1.38361 * 119.85291 * 120.00317 * 4 2 1 6 6 C 1.37950 * 120.14138 * 180.02562 * 5 4 2 7 7 C 1.39578 * 119.85642 * 359.96824 * 6 5 4 8 8 C 1.47850 * 120.14408 * 179.97438 * 7 6 5 9 9 O 1.21553 * 120.00185 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99831 * 179.72562 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27510 * 10 8 7 12 12 C 1.52997 * 109.47551 * 180.02562 * 11 10 8 13 13 C 1.50694 * 109.47456 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99649 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99902 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00351 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99771 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47118 * 60.00127 * 17 15 13 19 19 H 1.48498 * 109.47326 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47374 * 300.00233 * 17 15 13 21 21 C 1.39575 * 119.71081 * 0.26275 * 7 6 5 22 22 C 1.37959 * 119.85210 * 359.50582 * 21 7 6 23 23 C 1.52996 * 109.47235 * 119.99974 * 2 1 3 24 24 F 1.39897 * 109.47296 * 180.02562 * 23 2 1 25 25 F 1.39900 * 109.47358 * 300.00399 * 23 2 1 26 26 F 1.39901 * 109.47141 * 60.00127 * 23 2 1 27 27 H 1.08995 * 109.47256 * 299.99697 * 1 2 3 28 28 H 1.09001 * 109.47387 * 60.00189 * 1 2 3 29 29 H 1.09001 * 109.47135 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.92818 * 0.02562 * 5 4 2 31 31 H 1.08007 * 120.07425 * 179.97438 * 6 5 4 32 32 H 0.97001 * 119.99727 * 0.28406 * 10 8 7 33 33 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 34 34 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 35 35 H 1.09007 * 109.46479 * 300.00271 * 12 11 10 36 36 H 1.09003 * 109.47114 * 59.99483 * 12 11 10 37 37 H 0.96991 * 119.99882 * 180.02562 * 16 15 13 38 38 H 1.07998 * 120.07249 * 179.72483 * 21 7 6 39 39 H 1.07998 * 119.93004 * 180.23392 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.8277 -0.0350 -2.1392 6 6 3.2903 -0.6793 -3.2679 7 6 2.9550 -2.0155 -3.4918 8 6 3.4469 -2.7121 -4.6996 9 8 4.1453 -2.1212 -5.5000 10 7 3.1259 -4.0040 -4.9101 11 6 3.6183 -4.6960 -6.1039 12 6 3.1126 -6.1400 -6.1014 13 6 3.6195 -6.8520 -7.3289 14 1 4.2400 -6.3269 -8.0400 15 6 3.2912 -8.1737 -7.5442 16 7 2.5361 -8.8132 -6.6780 17 14 3.9191 -9.0560 -9.0663 18 1 5.4041 -9.0510 -9.0641 19 1 3.4294 -10.4579 -9.0632 20 1 3.4236 -8.3608 -10.2813 21 6 2.1484 -2.6896 -2.5736 22 6 1.6962 -2.0350 -1.4465 23 6 2.0400 -0.7212 1.2492 24 9 3.4390 -0.7207 1.2495 25 9 1.5737 -0.0618 2.3915 26 9 1.5737 -2.0402 1.2492 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.0868 0.9988 -1.9645 31 1 3.9107 -0.1509 -3.9767 32 1 2.5688 -4.4756 -4.2713 33 1 3.2546 -4.1856 -6.9956 34 1 4.7083 -4.6924 -6.1023 35 1 3.4760 -6.6506 -5.2095 36 1 2.0225 -6.1433 -6.1031 37 1 2.3055 -9.7431 -6.8293 38 1 1.8817 -3.7223 -2.7433 39 1 1.0751 -2.5565 -0.7333 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455998394.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:15 Heat of formation + Delta-G solvation = -202.738277 kcal Electronic energy + Delta-G solvation = -25384.189402 eV Core-core repulsion = 21068.099934 eV Total energy + Delta-G solvation = -4316.089468 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.11262 -48.60459 -48.57937 -41.32458 -39.77403 -36.68974 -35.88288 -34.87034 -32.37087 -31.68168 -30.58977 -27.38873 -26.92063 -25.01337 -23.84146 -23.00008 -22.36655 -21.35638 -19.50374 -19.42520 -19.06036 -18.51829 -18.39097 -17.22848 -16.54207 -16.53108 -16.33109 -15.96425 -15.73448 -15.39396 -15.37637 -15.02105 -14.97819 -14.89028 -14.74217 -14.54305 -14.32467 -14.21950 -14.05800 -14.03426 -13.44714 -13.24371 -13.00444 -12.90060 -12.56542 -12.44480 -12.25918 -12.25468 -11.91533 -11.70312 -11.49960 -11.00220 -10.61428 -10.21038 -10.03491 -9.85657 -8.25043 -6.35741 -0.34079 0.32968 1.41542 1.43801 1.51785 1.61726 1.91241 2.16213 2.43272 2.69930 2.87323 2.92276 3.09731 3.11056 3.56338 3.71529 3.76632 3.91933 4.04670 4.17180 4.33113 4.42442 4.45631 4.47099 4.67842 4.78784 4.81658 4.84396 4.98132 5.17194 5.21857 5.24401 5.31059 5.36883 5.45705 5.55217 5.76091 5.79494 6.14073 6.52403 6.76952 7.14249 7.33591 8.86677 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.024906 B = 0.002353 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.966352 B =11898.153924 C =12520.066745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 H 0.151 0.849 4 C -0.074 4.074 5 C -0.099 4.099 6 C -0.071 4.071 7 C -0.140 4.140 8 C 0.546 3.454 9 O -0.585 6.585 10 N -0.711 5.711 11 C 0.140 3.860 12 C 0.023 3.977 13 C -0.549 4.549 14 H 0.059 0.941 15 C 0.008 3.992 16 N -0.926 5.926 17 Si 0.965 3.035 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.268 1.268 21 C -0.086 4.086 22 C -0.116 4.116 23 C 0.452 3.548 24 F -0.191 7.191 25 F -0.183 7.183 26 F -0.186 7.186 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.166 0.834 31 H 0.133 0.867 32 H 0.409 0.591 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.009 0.991 36 H 0.010 0.990 37 H 0.266 0.734 38 H 0.139 0.861 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.931 20.843 18.918 28.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.104 4.104 3 H 0.169 0.831 4 C -0.075 4.075 5 C -0.116 4.116 6 C -0.090 4.090 7 C -0.143 4.143 8 C 0.335 3.665 9 O -0.467 6.467 10 N -0.362 5.362 11 C 0.016 3.984 12 C -0.015 4.015 13 C -0.587 4.587 14 H 0.078 0.922 15 C -0.191 4.191 16 N -0.566 5.566 17 Si 0.790 3.210 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.193 1.193 21 C -0.105 4.105 22 C -0.134 4.134 23 C 0.398 3.602 24 F -0.172 7.172 25 F -0.164 7.164 26 F -0.167 7.167 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.183 0.817 31 H 0.151 0.849 32 H 0.246 0.754 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.075 0.925 38 H 0.157 0.843 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.513 21.029 18.406 28.485 hybrid contribution 0.276 -1.349 -0.408 1.436 sum -5.236 19.680 17.998 27.178 Atomic orbital electron populations 1.21963 0.89147 1.04435 1.05311 1.21514 1.00689 1.01656 0.86563 0.83125 1.19783 0.97639 0.94221 0.95817 1.21267 0.96207 1.01558 0.92606 1.21365 0.97467 0.92568 0.97597 1.19998 1.02698 0.96208 0.95380 1.18864 0.79778 0.81744 0.86146 1.90712 1.40300 1.67157 1.48540 1.46099 1.52693 1.11486 1.25926 1.21291 0.97818 0.93253 0.86029 1.19134 0.95947 0.89660 0.96711 1.21430 1.32395 0.96969 1.07905 0.92240 1.25871 0.95052 0.98273 0.99929 1.70045 1.37614 1.11410 1.37482 0.85496 0.78917 0.77342 0.79292 1.19377 1.20555 1.19285 1.21489 0.95208 1.00489 0.93323 1.21383 1.00165 0.94535 0.97284 1.20834 0.75247 0.77735 0.86414 1.93193 1.30783 1.96411 1.96855 1.93182 1.88408 1.80644 1.54175 1.93138 1.88406 1.38566 1.96638 0.89588 0.88835 0.91288 0.81673 0.84868 0.75387 0.93194 0.93324 0.97298 0.97169 0.92489 0.84294 0.83134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.76 71.98 0.63 -0.40 16 2 C -0.09 -0.80 2.60 -11.54 -0.03 -0.83 16 3 H 0.15 0.63 7.87 -2.39 -0.02 0.61 16 4 C -0.07 -1.08 4.53 -19.80 -0.09 -1.17 16 5 C -0.10 -1.51 9.65 22.23 0.21 -1.30 16 6 C -0.07 -1.61 9.60 22.53 0.22 -1.39 16 7 C -0.14 -3.77 5.87 -20.09 -0.12 -3.89 16 8 C 0.55 19.46 7.77 86.79 0.67 20.14 16 9 O -0.59 -25.02 16.35 -3.88 -0.06 -25.09 16 10 N -0.71 -25.69 5.51 -465.97 -2.57 -28.25 16 11 C 0.14 6.10 5.61 86.38 0.48 6.59 16 12 C 0.02 1.16 5.09 29.85 0.15 1.31 16 13 C -0.55 -30.75 9.11 25.60 0.23 -30.51 16 14 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 15 C 0.01 0.43 5.46 84.65 0.46 0.89 16 16 N -0.93 -54.29 13.29 21.45 0.28 -54.01 16 17 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 21 C -0.09 -1.89 9.54 22.53 0.21 -1.67 16 22 C -0.12 -2.02 8.35 22.23 0.19 -1.83 16 23 C 0.45 6.37 2.67 71.98 0.19 6.57 16 24 F -0.19 -3.43 17.03 44.97 0.77 -2.66 16 25 F -0.18 -2.57 16.80 44.97 0.76 -1.82 16 26 F -0.19 -3.07 14.19 44.97 0.64 -2.43 16 27 H 0.09 0.42 7.80 -2.39 -0.02 0.40 16 28 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.07 0.56 7.04 -2.39 -0.02 0.54 16 30 H 0.17 1.37 7.94 -2.91 -0.02 1.35 16 31 H 0.13 3.15 7.65 -2.91 -0.02 3.13 16 32 H 0.41 12.65 6.51 -92.71 -0.60 12.05 16 33 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 36 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.14 2.76 6.41 -2.91 -0.02 2.74 16 39 H 0.15 2.19 5.88 -2.91 -0.02 2.17 16 Total: -1.00 -69.56 342.47 5.76 -63.81 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.49 Total: 12.30 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 3.42 Total: -7.50 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -2.28 Total: -82.26 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.06 Total: -25.09 kcal Atomic # 9 Polarization: -9.07 SS G_CDS: 2.16 Total: -6.91 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -69.56 5.76 -63.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455998394.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.932 kcal (2) G-P(sol) polarization free energy of solvation -69.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds