Wall clock time and date at job start Tue Mar 31 2020 10:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47286 * 2 1 4 4 C 1.50696 * 109.46964 * 240.00109 * 2 1 3 5 5 H 1.07996 * 120.00089 * 237.00755 * 4 2 1 6 6 C 1.37875 * 120.00184 * 56.99968 * 4 2 1 7 7 N 1.31513 * 119.99916 * 5.55137 * 6 4 2 8 8 Si 1.86804 * 120.00249 * 185.54972 * 6 4 2 9 9 H 1.48497 * 109.46938 * 85.00362 * 8 6 4 10 10 H 1.48500 * 109.47091 * 205.00494 * 8 6 4 11 11 H 1.48496 * 109.46884 * 325.00418 * 8 6 4 12 12 C 1.53001 * 109.47155 * 120.00284 * 2 1 3 13 13 N 1.46499 * 109.46733 * 299.99699 * 12 2 1 14 14 C 1.34777 * 120.00141 * 179.97438 * 13 12 2 15 15 O 1.21289 * 119.99717 * 359.72964 * 14 13 12 16 16 C 1.50700 * 120.00473 * 179.72458 * 14 13 12 17 17 C 1.50701 * 109.47056 * 180.02562 * 16 14 13 18 18 C 1.38241 * 119.97822 * 264.72499 * 17 16 14 19 19 C 1.38360 * 120.02592 * 179.76881 * 18 17 16 20 20 F 1.35102 * 120.01003 * 180.25304 * 19 18 17 21 21 C 1.38685 * 119.97749 * 0.53318 * 19 18 17 22 22 F 1.35105 * 120.02114 * 179.70432 * 21 19 18 23 23 C 1.38345 * 119.95702 * 359.71959 * 21 19 18 24 24 C 1.38427 * 119.97917 * 85.00094 * 17 16 14 25 25 F 1.35097 * 119.98913 * 359.97421 * 24 17 16 26 26 H 1.09003 * 109.46841 * 293.92716 * 1 2 3 27 27 H 1.09003 * 109.47181 * 53.92890 * 1 2 3 28 28 H 1.08994 * 109.47167 * 173.92970 * 1 2 3 29 29 H 1.08995 * 109.47363 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.47132 * 300.00030 * 3 2 1 31 31 H 1.09004 * 109.47197 * 59.99985 * 3 2 1 32 32 H 0.96999 * 120.00086 * 179.97438 * 7 6 4 33 33 H 1.08995 * 109.47199 * 180.02562 * 12 2 1 34 34 H 1.09003 * 109.47150 * 59.99418 * 12 2 1 35 35 H 0.97000 * 120.00494 * 359.72618 * 13 12 2 36 36 H 1.08990 * 109.46954 * 300.00019 * 16 14 13 37 37 H 1.09002 * 109.46887 * 60.00212 * 16 14 13 38 38 H 1.08007 * 119.98440 * 359.97438 * 18 17 16 39 39 H 1.08000 * 120.01432 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6925 -1.5594 -1.1322 6 6 1.6490 -0.2765 -2.4818 7 7 0.9350 0.8208 -2.6071 8 14 2.1438 -1.2472 -3.9991 9 1 1.1615 -2.3362 -4.2321 10 1 2.1705 -0.3441 -5.1776 11 1 3.4928 -1.8330 -3.7938 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4453 14 6 1.8769 -0.4914 3.6695 15 8 2.5697 -1.4807 3.7808 16 6 1.3798 0.2226 4.9000 17 6 1.8810 -0.4886 6.1304 18 6 1.0827 -1.4251 6.7604 19 6 1.5438 -2.0821 7.8873 20 9 0.7654 -3.0009 8.4997 21 6 2.8030 -1.7930 8.3914 22 9 3.2518 -2.4297 9.4953 23 6 3.5992 -0.8519 7.7634 24 6 3.1383 -0.1997 6.6324 25 9 3.9155 0.7193 6.0189 26 1 -0.3633 0.4168 0.9394 27 1 -0.3634 0.6051 -0.8307 28 1 -0.3633 -1.0218 -0.1087 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 0.6657 1.1263 -3.4874 33 1 3.1300 -0.7209 1.2494 34 1 1.6767 -1.7490 1.2492 35 1 0.9974 0.7603 2.3564 36 1 1.7480 1.2484 4.8984 37 1 0.2897 0.2278 4.9015 38 1 0.1000 -1.6462 6.3707 39 1 4.5801 -0.6263 8.1549 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457998744.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:29 Heat of formation + Delta-G solvation = -156.426401 kcal Electronic energy + Delta-G solvation = -25814.863346 eV Core-core repulsion = 21500.782112 eV Total energy + Delta-G solvation = -4314.081234 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.78558 -49.25147 -48.85426 -39.86782 -38.63992 -36.41291 -33.36818 -32.97400 -30.98027 -30.65596 -27.96839 -25.77938 -25.57477 -24.78032 -23.76022 -22.45486 -20.23105 -18.86833 -18.58878 -18.20944 -17.58159 -17.18798 -16.61913 -16.08043 -15.83348 -15.60776 -15.28846 -15.24585 -15.14996 -14.77273 -14.65016 -14.59506 -14.16939 -13.46505 -13.38657 -12.99580 -12.88147 -12.54153 -12.24235 -11.98989 -11.90613 -11.71132 -11.43509 -11.22742 -10.89250 -10.72732 -10.42872 -10.25183 -9.76319 -9.67675 -9.48106 -9.29132 -8.85880 -8.80000 -8.51858 -8.36408 -6.06278 -4.15204 0.41723 0.50735 2.76274 2.90690 3.26795 3.31652 3.33435 3.36774 3.62968 3.71825 4.04340 4.07802 4.19278 4.37896 4.59703 4.99925 5.05510 5.17494 5.20546 5.21125 5.36700 5.41279 5.62044 5.72061 6.16659 6.27440 6.32966 6.45812 6.72077 6.76169 6.86986 6.94948 6.96790 7.30258 7.51132 7.66306 7.94511 7.95388 8.09450 8.33794 8.58110 8.85157 9.50578 10.95775 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.027462 B = 0.002632 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.353903 B =10634.767886 C =10827.571127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.509 4.509 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.132 3.868 13 N -0.714 5.714 14 C 0.506 3.494 15 O -0.545 6.545 16 C -0.108 4.108 17 C -0.072 4.072 18 C -0.085 4.085 19 C 0.060 3.940 20 F -0.125 7.125 21 C 0.095 3.905 22 F -0.122 7.122 23 C -0.163 4.163 24 C 0.139 3.861 25 F -0.120 7.120 26 H 0.007 0.993 27 H 0.081 0.919 28 H 0.029 0.971 29 H 0.027 0.973 30 H 0.086 0.914 31 H 0.006 0.994 32 H 0.260 0.740 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.399 0.601 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.157 0.843 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.867 1.347 19.842 19.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.548 4.548 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.010 3.990 13 N -0.364 5.364 14 C 0.291 3.709 15 O -0.423 6.423 16 C -0.148 4.148 17 C -0.074 4.074 18 C -0.104 4.104 19 C 0.040 3.960 20 F -0.103 7.103 21 C 0.074 3.926 22 F -0.101 7.101 23 C -0.182 4.182 24 C 0.119 3.881 25 F -0.099 7.099 26 H 0.026 0.974 27 H 0.100 0.900 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.025 0.975 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.234 0.766 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.175 0.825 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.430 0.724 19.780 19.798 hybrid contribution 0.118 -0.287 -0.720 0.784 sum -0.312 0.437 19.060 19.068 Atomic orbital electron populations 1.21812 0.97708 1.00180 0.98983 1.18356 0.92775 0.92762 0.90566 1.21856 0.98649 0.98302 1.00049 1.20967 1.29436 1.14399 0.89950 0.92436 1.24870 0.94942 0.94756 0.98812 1.69818 1.37818 1.21375 1.23342 0.86597 0.79072 0.79926 0.82351 1.20604 1.21312 1.19949 1.21736 0.98196 0.95832 0.83281 1.46295 1.52665 1.31611 1.05876 1.20206 0.81129 0.85037 0.84567 1.90711 1.38415 1.26353 1.86850 1.20688 1.03526 1.00611 0.89957 1.19260 0.92906 0.98228 0.96986 1.20793 1.01602 0.94733 0.93225 1.17522 0.89248 0.93627 0.95613 1.91549 1.73436 1.63425 1.81915 1.17197 0.92404 0.96096 0.86869 1.91556 1.88997 1.80009 1.49508 1.20882 1.02222 0.98240 0.96879 1.17047 0.88917 0.90123 0.92031 1.91562 1.73683 1.62917 1.81707 0.97447 0.89984 0.95172 0.95426 0.89552 0.97549 0.92974 0.92669 0.92597 0.76568 0.87105 0.86921 0.82521 0.82327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 8.03 37.16 0.30 -2.48 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.84 8.11 37.15 0.30 -2.54 16 4 C -0.51 -13.09 8.01 -34.44 -0.28 -13.36 16 5 H 0.06 1.50 7.75 -52.49 -0.41 1.09 16 6 C 0.07 1.75 5.13 -17.82 -0.09 1.66 16 7 N -0.89 -23.17 9.45 55.43 0.52 -22.64 16 8 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 C 0.13 2.68 4.50 -4.04 -0.02 2.66 16 13 N -0.71 -11.61 4.90 -60.29 -0.30 -11.91 16 14 C 0.51 7.84 7.82 -10.98 -0.09 7.76 16 15 O -0.55 -10.64 16.03 5.55 0.09 -10.55 16 16 C -0.11 -1.11 5.60 -29.03 -0.16 -1.28 16 17 C -0.07 -0.79 4.38 -104.55 -0.46 -1.25 16 18 C -0.08 -0.84 9.65 -39.54 -0.38 -1.23 16 19 C 0.06 0.65 7.31 -39.37 -0.29 0.36 16 20 F -0.12 -1.43 17.18 2.25 0.04 -1.39 16 21 C 0.09 1.01 7.31 -39.38 -0.29 0.73 16 22 F -0.12 -1.36 17.18 2.25 0.04 -1.32 16 23 C -0.16 -1.62 10.00 -39.46 -0.39 -2.01 16 24 C 0.14 1.57 7.24 -39.43 -0.29 1.28 16 25 F -0.12 -1.48 16.56 2.25 0.04 -1.44 16 26 H 0.01 0.12 6.72 -51.93 -0.35 -0.23 16 27 H 0.08 1.96 6.25 -51.93 -0.32 1.63 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.09 2.09 6.10 -51.93 -0.32 1.78 16 31 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 32 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 33 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.40 5.68 6.16 -40.82 -0.25 5.42 16 36 H 0.11 0.96 7.79 -51.93 -0.40 0.56 16 37 H 0.11 0.82 8.05 -51.93 -0.42 0.40 16 38 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 39 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 338.43 15.07 5.10 5.10 Total: -1.00 -28.90 338.43 -6.20 -35.09 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.50 Total: 2.13 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -2.21 Total: -8.52 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.23 Total: -34.55 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.11 Total: -4.15 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.90 -6.20 -35.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457998744.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.335 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds