Wall clock time and date at job start Tue Mar 31 2020 10:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47286 * 2 1 4 4 C 1.50696 * 109.46964 * 240.00109 * 2 1 3 5 5 H 1.07996 * 120.00089 * 237.00755 * 4 2 1 6 6 C 1.37875 * 120.00184 * 56.99968 * 4 2 1 7 7 N 1.31513 * 119.99916 * 5.55137 * 6 4 2 8 8 Si 1.86804 * 120.00249 * 185.54972 * 6 4 2 9 9 H 1.48497 * 109.46938 * 85.00362 * 8 6 4 10 10 H 1.48500 * 109.47091 * 205.00494 * 8 6 4 11 11 H 1.48496 * 109.46884 * 325.00418 * 8 6 4 12 12 C 1.53001 * 109.47155 * 120.00284 * 2 1 3 13 13 N 1.46499 * 109.46733 * 299.99699 * 12 2 1 14 14 C 1.34777 * 120.00141 * 179.97438 * 13 12 2 15 15 O 1.21289 * 119.99717 * 359.72964 * 14 13 12 16 16 C 1.50700 * 120.00473 * 179.72458 * 14 13 12 17 17 C 1.50701 * 109.47056 * 180.02562 * 16 14 13 18 18 C 1.38241 * 119.97822 * 264.72499 * 17 16 14 19 19 C 1.38360 * 120.02592 * 179.76881 * 18 17 16 20 20 F 1.35102 * 120.01003 * 180.25304 * 19 18 17 21 21 C 1.38685 * 119.97749 * 0.53318 * 19 18 17 22 22 F 1.35105 * 120.02114 * 179.70432 * 21 19 18 23 23 C 1.38345 * 119.95702 * 359.71959 * 21 19 18 24 24 C 1.38427 * 119.97917 * 85.00094 * 17 16 14 25 25 F 1.35097 * 119.98913 * 359.97421 * 24 17 16 26 26 H 1.09003 * 109.46841 * 293.92716 * 1 2 3 27 27 H 1.09003 * 109.47181 * 53.92890 * 1 2 3 28 28 H 1.08994 * 109.47167 * 173.92970 * 1 2 3 29 29 H 1.08995 * 109.47363 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.47132 * 300.00030 * 3 2 1 31 31 H 1.09004 * 109.47197 * 59.99985 * 3 2 1 32 32 H 0.96999 * 120.00086 * 179.97438 * 7 6 4 33 33 H 1.08995 * 109.47199 * 180.02562 * 12 2 1 34 34 H 1.09003 * 109.47150 * 59.99418 * 12 2 1 35 35 H 0.97000 * 120.00494 * 359.72618 * 13 12 2 36 36 H 1.08990 * 109.46954 * 300.00019 * 16 14 13 37 37 H 1.09002 * 109.46887 * 60.00212 * 16 14 13 38 38 H 1.08007 * 119.98440 * 359.97438 * 18 17 16 39 39 H 1.08000 * 120.01432 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6925 -1.5594 -1.1322 6 6 1.6490 -0.2765 -2.4818 7 7 0.9350 0.8208 -2.6071 8 14 2.1438 -1.2472 -3.9991 9 1 1.1615 -2.3362 -4.2321 10 1 2.1705 -0.3441 -5.1776 11 1 3.4928 -1.8330 -3.7938 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4453 14 6 1.8769 -0.4914 3.6695 15 8 2.5697 -1.4807 3.7808 16 6 1.3798 0.2226 4.9000 17 6 1.8810 -0.4886 6.1304 18 6 1.0827 -1.4251 6.7604 19 6 1.5438 -2.0821 7.8873 20 9 0.7654 -3.0009 8.4997 21 6 2.8030 -1.7930 8.3914 22 9 3.2518 -2.4297 9.4953 23 6 3.5992 -0.8519 7.7634 24 6 3.1383 -0.1997 6.6324 25 9 3.9155 0.7193 6.0189 26 1 -0.3633 0.4168 0.9394 27 1 -0.3634 0.6051 -0.8307 28 1 -0.3633 -1.0218 -0.1087 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 0.6657 1.1263 -3.4874 33 1 3.1300 -0.7209 1.2494 34 1 1.6767 -1.7490 1.2492 35 1 0.9974 0.7603 2.3564 36 1 1.7480 1.2484 4.8984 37 1 0.2897 0.2278 4.9015 38 1 0.1000 -1.6462 6.3707 39 1 4.5801 -0.6263 8.1549 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457998744.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:28 Heat of formation + Delta-G solvation = -171.862253 kcal Electronic energy + Delta-G solvation = -25815.532695 eV Core-core repulsion = 21500.782112 eV Total energy + Delta-G solvation = -4314.750583 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.62922 -50.13036 -49.70293 -41.00018 -39.65972 -38.05512 -34.96950 -33.91161 -32.66185 -31.51112 -28.97925 -27.53226 -27.36792 -26.37157 -24.57107 -23.40021 -21.48647 -20.58084 -19.43965 -19.03951 -18.57014 -18.32573 -17.69963 -17.45546 -17.02875 -16.62788 -16.54312 -16.40274 -16.24067 -16.09758 -15.71681 -15.42845 -15.09185 -14.90415 -14.69837 -14.59012 -14.07809 -13.94494 -13.42907 -13.23600 -13.06308 -12.86160 -12.76207 -12.63575 -12.60497 -12.48373 -12.20913 -12.13716 -11.45443 -11.26031 -10.92665 -10.68285 -10.38078 -10.21964 -9.90699 -9.67912 -8.02592 -6.16717 -0.41784 -0.26783 1.42614 1.45690 1.52708 1.71334 1.91322 2.40749 2.51959 2.56404 2.86980 3.21572 3.24662 3.26491 3.40706 3.83502 3.97946 4.27781 4.38419 4.43177 4.49007 4.54578 4.61517 4.67922 4.75470 4.81197 4.94732 5.03766 5.09029 5.13482 5.22482 5.39511 5.53072 5.62722 5.69079 5.70813 6.17798 6.24136 6.44831 6.70044 6.87796 7.35561 7.50775 8.96600 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.027462 B = 0.002632 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.353903 B =10634.767886 C =10827.571127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.532 4.532 5 H 0.042 0.958 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.941 3.059 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.149 3.851 13 N -0.709 5.709 14 C 0.505 3.495 15 O -0.589 6.589 16 C -0.098 4.098 17 C -0.081 4.081 18 C -0.079 4.079 19 C 0.051 3.949 20 F -0.131 7.131 21 C 0.088 3.912 22 F -0.127 7.127 23 C -0.158 4.158 24 C 0.125 3.875 25 F -0.129 7.129 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.017 0.983 29 H 0.015 0.985 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.260 0.740 33 H 0.034 0.966 34 H 0.039 0.961 35 H 0.412 0.588 36 H 0.133 0.867 37 H 0.153 0.847 38 H 0.181 0.819 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.767 2.111 20.956 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.571 4.571 5 H 0.060 0.940 6 C -0.169 4.169 7 N -0.536 5.536 8 Si 0.768 3.232 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.203 1.203 12 C 0.025 3.975 13 N -0.360 5.360 14 C 0.292 3.708 15 O -0.470 6.470 16 C -0.137 4.137 17 C -0.083 4.083 18 C -0.097 4.097 19 C 0.030 3.970 20 F -0.109 7.109 21 C 0.067 3.933 22 F -0.106 7.106 23 C -0.177 4.177 24 C 0.105 3.895 25 F -0.107 7.107 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.250 0.750 36 H 0.151 0.849 37 H 0.171 0.829 38 H 0.198 0.802 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -1.347 1.513 20.908 21.006 hybrid contribution 0.430 -0.549 -1.020 1.236 sum -0.918 0.964 19.887 19.932 Atomic orbital electron populations 1.21650 0.96835 0.99195 0.99985 1.18349 0.93390 0.92965 0.90224 1.21696 0.97816 0.97862 1.00535 1.21290 1.29517 1.14429 0.91833 0.93954 1.25411 0.95209 0.95532 1.00790 1.69917 1.38161 1.21879 1.23629 0.85840 0.78504 0.78902 0.79955 1.20419 1.20905 1.20254 1.21216 0.96790 0.95141 0.84381 1.46097 1.52959 1.31851 1.05130 1.21074 0.79874 0.84427 0.85401 1.90699 1.40269 1.28506 1.87476 1.20734 1.05872 1.00607 0.86444 1.19407 0.92914 0.98629 0.97328 1.21030 1.02432 0.93746 0.92496 1.17708 0.89335 0.93825 0.96086 1.91534 1.73578 1.63704 1.82093 1.17329 0.92657 0.96380 0.86916 1.91543 1.89077 1.80153 1.49778 1.21033 1.02868 0.97482 0.96350 1.17275 0.89268 0.90424 0.92553 1.91540 1.73977 1.63257 1.81920 0.93709 0.92305 0.96387 0.96578 0.92013 0.94001 0.93050 0.94772 0.94307 0.75030 0.84865 0.82907 0.80185 0.80486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 8.03 71.98 0.58 -4.39 16 2 C 0.05 2.27 0.50 -52.93 -0.03 2.25 16 3 C -0.12 -5.15 8.11 71.98 0.58 -4.57 16 4 C -0.53 -27.69 8.01 25.60 0.20 -27.48 16 5 H 0.04 2.27 7.75 -2.91 -0.02 2.24 16 6 C 0.03 1.59 5.13 84.65 0.43 2.03 16 7 N -0.90 -46.99 9.45 21.45 0.20 -46.79 16 8 Si 0.94 42.15 29.54 68.60 2.03 44.17 16 9 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 C 0.15 6.00 4.50 86.38 0.39 6.39 16 13 N -0.71 -21.45 4.90 -463.05 -2.27 -23.72 16 14 C 0.50 14.50 7.82 87.66 0.69 15.18 16 15 O -0.59 -22.43 16.03 -3.06 -0.05 -22.48 16 16 C -0.10 -1.65 5.60 29.10 0.16 -1.49 16 17 C -0.08 -1.56 4.38 -19.82 -0.09 -1.64 16 18 C -0.08 -1.36 9.65 22.30 0.22 -1.15 16 19 C 0.05 1.02 7.31 22.41 0.16 1.18 16 20 F -0.13 -2.82 17.18 44.97 0.77 -2.05 16 21 C 0.09 1.76 7.31 22.40 0.16 1.93 16 22 F -0.13 -2.71 17.18 44.97 0.77 -1.94 16 23 C -0.16 -2.91 10.00 22.35 0.22 -2.69 16 24 C 0.12 2.59 7.24 22.37 0.16 2.75 16 25 F -0.13 -2.94 16.56 44.97 0.74 -2.20 16 26 H 0.04 1.49 6.72 -2.39 -0.02 1.47 16 27 H 0.06 2.75 6.25 -2.39 -0.01 2.74 16 28 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 2.95 6.10 -2.38 -0.01 2.94 16 31 H 0.04 1.43 6.86 -2.38 -0.02 1.42 16 32 H 0.26 13.15 8.31 -92.71 -0.77 12.38 16 33 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.41 10.22 6.16 -92.71 -0.57 9.65 16 36 H 0.13 1.74 7.79 -2.39 -0.02 1.72 16 37 H 0.15 1.40 8.05 -2.39 -0.02 1.38 16 38 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -63.33 338.43 6.59 -56.74 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.53 Total: 9.96 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: 3.85 Total: -11.71 kcal Atomic # 7 Polarization: -68.44 SS G_CDS: -2.07 Total: -70.51 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.05 Total: -22.48 kcal Atomic # 9 Polarization: -8.48 SS G_CDS: 2.29 Total: -6.19 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -63.33 6.59 -56.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457998744.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.119 kcal (2) G-P(sol) polarization free energy of solvation -63.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds