Wall clock time and date at job start Tue Mar 31 2020 10:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54790 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55161 * 3 2 1 6 6 H 1.07999 * 119.99715 * 245.60397 * 5 3 2 7 7 C 1.37879 * 120.00117 * 65.60375 * 5 3 2 8 8 N 1.31512 * 119.99978 * 196.28070 * 7 5 3 9 9 Si 1.86805 * 119.99966 * 16.28830 * 7 5 3 10 10 H 1.48497 * 109.46898 * 179.97438 * 9 7 5 11 11 H 1.48506 * 109.46960 * 299.99810 * 9 7 5 12 12 H 1.48499 * 109.47283 * 59.99520 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55383 * 3 2 1 14 14 C 1.34781 * 119.99694 * 275.00048 * 13 3 2 15 15 O 1.21558 * 119.99927 * 359.97438 * 14 13 3 16 16 C 1.47840 * 119.99703 * 180.02562 * 14 13 3 17 17 C 1.39597 * 120.14800 * 359.97438 * 16 14 13 18 18 C 1.37934 * 119.85486 * 179.97438 * 17 16 14 19 19 C 1.38385 * 120.14519 * 359.97438 * 18 17 16 20 20 C 1.50694 * 119.85298 * 180.02562 * 19 18 17 21 21 C 1.38333 * 120.29295 * 0.02562 * 19 18 17 22 22 C 1.50702 * 119.92794 * 180.02562 * 21 19 18 23 23 F 1.39905 * 109.46955 * 180.02562 * 22 21 19 24 24 F 1.39901 * 109.46919 * 299.99729 * 22 21 19 25 25 F 1.39895 * 109.47219 * 59.99918 * 22 21 19 26 26 C 1.37982 * 120.14553 * 359.74430 * 21 19 18 27 27 H 1.08999 * 109.47111 * 300.00221 * 1 2 3 28 28 H 1.09006 * 109.47148 * 60.00076 * 1 2 3 29 29 H 1.08996 * 109.47553 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47111 * 239.99779 * 2 1 3 31 31 H 1.09000 * 109.47249 * 120.00370 * 2 1 3 32 32 H 0.96993 * 120.00160 * 354.84026 * 8 7 5 33 33 H 0.96993 * 120.00114 * 95.00036 * 13 3 2 34 34 H 1.08001 * 120.07026 * 0.02562 * 17 16 14 35 35 H 1.08002 * 119.92805 * 179.97438 * 18 17 16 36 36 H 1.08997 * 109.47881 * 89.99286 * 20 19 18 37 37 H 1.09000 * 109.47018 * 209.99737 * 20 19 18 38 38 H 1.09005 * 109.47432 * 329.99010 * 20 19 18 39 39 H 1.07997 * 120.07715 * 180.25139 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4446 -0.1375 6 1 4.1567 1.8041 0.6736 7 6 4.1273 0.9878 -1.2986 8 7 5.4073 0.6860 -1.3140 9 14 3.1041 0.7977 -2.8498 10 1 3.9637 0.2944 -3.9512 11 1 2.0024 -0.1666 -2.6010 12 1 2.5328 2.1144 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4476 2.6600 1.3854 15 8 -0.3370 2.6312 0.4574 16 6 0.0683 3.3174 2.6541 17 6 0.9672 3.3527 3.7216 18 6 0.6071 3.9681 4.9023 19 6 -0.6418 4.5502 5.0299 20 6 -1.0281 5.2213 6.3227 21 6 -1.5373 4.5188 3.9760 22 6 -2.8950 5.1558 4.1237 23 9 -3.6165 4.9969 2.9356 24 9 -3.5862 4.5423 5.1741 25 9 -2.7431 6.5190 4.3988 26 6 -1.1879 3.9105 2.7878 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.9549 0.8550 -0.5315 33 1 2.2901 2.1167 1.9977 34 1 1.9426 2.8998 3.6228 35 1 1.3015 3.9957 5.7291 36 1 -0.7422 6.2725 6.2861 37 1 -2.1059 5.1426 6.4650 38 1 -0.5156 4.7341 7.1523 39 1 -1.8864 3.8902 1.9643 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529033821.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:53 Heat of formation + Delta-G solvation = -172.648075 kcal Electronic energy + Delta-G solvation = -26500.311442 eV Core-core repulsion = 22185.526784 eV Total energy + Delta-G solvation = -4314.784659 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.40097 -47.88842 -47.82807 -40.27511 -38.64492 -35.38013 -33.53483 -32.49417 -32.06867 -31.30131 -28.16057 -27.22233 -25.83293 -23.04357 -22.46721 -22.28755 -20.76162 -19.69430 -18.77654 -18.69608 -18.60769 -17.48757 -16.51870 -16.06620 -15.46365 -15.20036 -14.99970 -14.83380 -14.61982 -14.30910 -14.27806 -14.03184 -13.98166 -13.92063 -13.72878 -13.39020 -12.87724 -12.67804 -12.65257 -12.52327 -12.40711 -12.12156 -11.87139 -11.72321 -11.37809 -10.95404 -10.74355 -10.48121 -9.93869 -9.67753 -9.52188 -9.39641 -9.10741 -9.03158 -8.39629 -8.19253 -6.63432 -4.28144 0.50939 0.85436 2.43935 2.80278 3.35269 3.42058 3.46682 3.55761 3.68756 3.77142 3.92658 4.21941 4.36786 4.38012 4.46624 4.77784 4.91571 5.04369 5.11591 5.21526 5.22580 5.30273 5.54143 5.69137 5.87837 5.99879 6.02956 6.04867 6.05767 6.23054 6.41889 6.64089 6.75389 6.88187 6.99016 7.27855 7.31831 7.56507 8.16970 8.33638 8.61430 8.83658 9.41146 10.77497 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.024160 B = 0.003351 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.678969 B = 8354.553597 C = 8914.992405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.247 3.753 4 H 0.044 0.956 5 C -0.619 4.619 6 H 0.061 0.939 7 C 0.041 3.959 8 N -0.897 5.897 9 Si 1.039 2.961 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.279 1.279 13 N -0.692 5.692 14 C 0.543 3.457 15 O -0.541 6.541 16 C -0.129 4.129 17 C -0.052 4.052 18 C -0.129 4.129 19 C -0.019 4.019 20 C -0.138 4.138 21 C -0.199 4.199 22 C 0.513 3.487 23 F -0.174 7.174 24 F -0.176 7.176 25 F -0.176 7.176 26 C -0.015 4.015 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.269 0.731 33 H 0.392 0.608 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.801 7.778 15.548 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.143 3.857 4 H 0.062 0.938 5 C -0.656 4.656 6 H 0.080 0.920 7 C -0.166 4.166 8 N -0.530 5.530 9 Si 0.867 3.133 10 H -0.209 1.209 11 H -0.194 1.194 12 H -0.206 1.206 13 N -0.340 5.340 14 C 0.328 3.672 15 O -0.421 6.421 16 C -0.132 4.132 17 C -0.070 4.070 18 C -0.147 4.147 19 C -0.019 4.019 20 C -0.194 4.194 21 C -0.200 4.200 22 C 0.458 3.542 23 F -0.155 7.155 24 F -0.157 7.157 25 F -0.158 7.158 26 C -0.033 4.033 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.226 0.774 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.275 7.224 13.280 20.119 hybrid contribution 0.160 0.662 2.067 2.177 sum -13.116 7.886 15.347 21.674 Atomic orbital electron populations 1.21895 0.97337 0.99016 1.01970 1.22366 0.93843 0.99616 1.01989 1.19121 0.95955 0.88645 0.81931 0.93823 1.22073 0.89548 1.49787 1.04241 0.92040 1.25676 0.97519 0.92265 1.01173 1.70879 1.07057 1.40730 1.34302 0.84128 0.75527 0.77797 0.75879 1.20865 1.19425 1.20553 1.46212 1.14110 1.55360 1.18293 1.18062 0.83085 0.79387 0.86644 1.90756 1.50922 1.60008 1.40396 1.20238 0.94998 1.02262 0.95744 1.21661 0.98976 0.94498 0.91913 1.20982 0.95735 0.99534 0.98460 1.19795 0.93076 0.94518 0.94522 1.21170 1.03362 1.01124 0.93744 1.19745 0.94087 1.08451 0.97739 1.18185 0.85783 0.76436 0.73753 1.93195 1.79979 1.95312 1.47002 1.93166 1.81529 1.82923 1.58124 1.93209 1.95829 1.33131 1.93583 1.21107 0.95819 0.90712 0.95711 0.93352 0.92927 0.94955 0.91127 0.93016 0.92083 0.77394 0.84343 0.84258 0.89743 0.90513 0.90164 0.83100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.53 37.15 0.32 -2.56 16 2 C -0.14 -3.03 5.27 -26.73 -0.14 -3.18 16 3 C 0.25 5.70 1.82 -69.08 -0.13 5.58 16 4 H 0.04 1.11 6.25 -51.93 -0.32 0.78 16 5 C -0.62 -16.21 9.01 -34.44 -0.31 -16.52 16 6 H 0.06 1.67 7.96 -52.49 -0.42 1.25 16 7 C 0.04 1.11 5.32 -17.82 -0.09 1.02 16 8 N -0.90 -26.16 13.70 55.43 0.76 -25.40 16 9 Si 1.04 24.60 26.27 -169.99 -4.47 20.13 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -5.92 5.67 56.52 0.32 -5.60 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.69 -13.39 4.98 -55.88 -0.28 -13.67 16 14 C 0.54 10.09 6.37 -12.33 -0.08 10.01 16 15 O -0.54 -11.63 13.49 5.31 0.07 -11.56 16 16 C -0.13 -1.89 5.87 -104.97 -0.62 -2.51 16 17 C -0.05 -0.60 9.54 -39.19 -0.37 -0.98 16 18 C -0.13 -1.24 9.68 -39.64 -0.38 -1.62 16 19 C -0.02 -0.19 5.85 -104.54 -0.61 -0.80 16 20 C -0.14 -1.03 8.97 36.00 0.32 -0.71 16 21 C -0.20 -2.36 5.37 -104.68 -0.56 -2.93 16 22 C 0.51 5.83 2.81 36.01 0.10 5.94 16 23 F -0.17 -2.15 15.97 2.25 0.04 -2.11 16 24 F -0.18 -1.92 15.32 2.25 0.03 -1.89 16 25 F -0.18 -1.94 16.42 2.25 0.04 -1.91 16 26 C -0.01 -0.20 8.98 -39.18 -0.35 -0.55 16 27 H 0.05 0.95 5.63 -51.93 -0.29 0.66 16 28 H 0.05 1.09 7.88 -51.93 -0.41 0.68 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.61 4.74 -51.93 -0.25 1.36 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.27 7.74 8.73 -40.82 -0.36 7.39 16 33 H 0.39 6.61 6.56 -40.82 -0.27 6.34 16 34 H 0.14 1.41 6.41 -52.49 -0.34 1.07 16 35 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.60 5.49 -51.93 -0.29 0.32 16 38 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 39 H 0.15 2.17 6.74 -52.49 -0.35 1.82 16 LS Contribution 326.34 15.07 4.92 4.92 Total: -1.00 -30.04 326.34 -6.07 -36.11 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -4.28 Total: 5.17 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -2.91 Total: -9.80 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.48 Total: -39.07 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.07 Total: -11.56 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 0.11 Total: -5.90 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -4.47 Total: 20.13 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.04 -6.07 -36.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529033821.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.538 kcal (2) G-P(sol) polarization free energy of solvation -30.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds