Wall clock time and date at job start Tue Mar 31 2020 10:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54790 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55161 * 3 2 1 6 6 H 1.07999 * 119.99715 * 245.60397 * 5 3 2 7 7 C 1.37879 * 120.00117 * 65.60375 * 5 3 2 8 8 N 1.31512 * 119.99978 * 196.28070 * 7 5 3 9 9 Si 1.86805 * 119.99966 * 16.28830 * 7 5 3 10 10 H 1.48497 * 109.46898 * 179.97438 * 9 7 5 11 11 H 1.48506 * 109.46960 * 299.99810 * 9 7 5 12 12 H 1.48499 * 109.47283 * 59.99520 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55383 * 3 2 1 14 14 C 1.34781 * 119.99694 * 275.00048 * 13 3 2 15 15 O 1.21558 * 119.99927 * 359.97438 * 14 13 3 16 16 C 1.47840 * 119.99703 * 180.02562 * 14 13 3 17 17 C 1.39597 * 120.14800 * 359.97438 * 16 14 13 18 18 C 1.37934 * 119.85486 * 179.97438 * 17 16 14 19 19 C 1.38385 * 120.14519 * 359.97438 * 18 17 16 20 20 C 1.50694 * 119.85298 * 180.02562 * 19 18 17 21 21 C 1.38333 * 120.29295 * 0.02562 * 19 18 17 22 22 C 1.50702 * 119.92794 * 180.02562 * 21 19 18 23 23 F 1.39905 * 109.46955 * 180.02562 * 22 21 19 24 24 F 1.39901 * 109.46919 * 299.99729 * 22 21 19 25 25 F 1.39895 * 109.47219 * 59.99918 * 22 21 19 26 26 C 1.37982 * 120.14553 * 359.74430 * 21 19 18 27 27 H 1.08999 * 109.47111 * 300.00221 * 1 2 3 28 28 H 1.09006 * 109.47148 * 60.00076 * 1 2 3 29 29 H 1.08996 * 109.47553 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47111 * 239.99779 * 2 1 3 31 31 H 1.09000 * 109.47249 * 120.00370 * 2 1 3 32 32 H 0.96993 * 120.00160 * 354.84026 * 8 7 5 33 33 H 0.96993 * 120.00114 * 95.00036 * 13 3 2 34 34 H 1.08001 * 120.07026 * 0.02562 * 17 16 14 35 35 H 1.08002 * 119.92805 * 179.97438 * 18 17 16 36 36 H 1.08997 * 109.47881 * 89.99286 * 20 19 18 37 37 H 1.09000 * 109.47018 * 209.99737 * 20 19 18 38 38 H 1.09005 * 109.47432 * 329.99010 * 20 19 18 39 39 H 1.07997 * 120.07715 * 180.25139 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4446 -0.1375 6 1 4.1567 1.8041 0.6736 7 6 4.1273 0.9878 -1.2986 8 7 5.4073 0.6860 -1.3140 9 14 3.1041 0.7977 -2.8498 10 1 3.9637 0.2944 -3.9512 11 1 2.0024 -0.1666 -2.6010 12 1 2.5328 2.1144 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4476 2.6600 1.3854 15 8 -0.3370 2.6312 0.4574 16 6 0.0683 3.3174 2.6541 17 6 0.9672 3.3527 3.7216 18 6 0.6071 3.9681 4.9023 19 6 -0.6418 4.5502 5.0299 20 6 -1.0281 5.2213 6.3227 21 6 -1.5373 4.5188 3.9760 22 6 -2.8950 5.1558 4.1237 23 9 -3.6165 4.9969 2.9356 24 9 -3.5862 4.5423 5.1741 25 9 -2.7431 6.5190 4.3988 26 6 -1.1879 3.9105 2.7878 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.9549 0.8550 -0.5315 33 1 2.2901 2.1167 1.9977 34 1 1.9426 2.8998 3.6228 35 1 1.3015 3.9957 5.7291 36 1 -0.7422 6.2725 6.2861 37 1 -2.1059 5.1426 6.4650 38 1 -0.5156 4.7341 7.1523 39 1 -1.8864 3.8902 1.9643 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529033821.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:52 Heat of formation + Delta-G solvation = -190.486951 kcal Electronic energy + Delta-G solvation = -26501.084994 eV Core-core repulsion = 22185.526784 eV Total energy + Delta-G solvation = -4315.558210 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.30309 -48.81240 -48.71118 -41.46634 -39.90409 -37.11408 -34.74839 -34.24985 -33.13789 -32.73098 -29.45410 -28.58602 -26.84200 -24.48702 -23.81803 -23.38380 -22.12501 -21.28780 -20.26910 -19.59013 -19.53928 -19.12048 -17.68357 -17.47425 -16.68103 -16.40775 -16.15499 -15.80779 -15.70805 -15.53628 -15.21752 -15.17929 -14.94046 -14.88078 -14.80484 -14.68121 -14.51895 -14.37223 -14.11403 -13.76238 -13.58042 -13.16810 -13.01238 -12.80958 -12.69297 -12.49487 -12.30704 -12.21812 -11.79627 -11.42271 -11.13610 -10.90934 -10.48823 -10.42940 -10.04694 -9.79543 -8.79989 -6.45067 -0.44458 -0.08921 1.45256 1.50194 1.53032 1.68494 1.69860 2.29654 2.40919 2.56561 2.61062 2.94218 3.00919 3.32425 3.53136 3.64041 3.80775 3.91963 4.14328 4.29427 4.33965 4.38965 4.51847 4.52964 4.69018 4.72031 4.82402 4.96094 5.06178 5.09083 5.12929 5.18684 5.20360 5.28354 5.52973 5.54238 5.62137 5.66708 6.00629 6.51929 6.75343 7.24817 7.35317 8.60202 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.024160 B = 0.003351 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.678969 B = 8354.553597 C = 8914.992405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.136 4.136 3 C 0.251 3.749 4 H 0.023 0.977 5 C -0.613 4.613 6 H 0.044 0.956 7 C -0.002 4.002 8 N -0.928 5.928 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.243 1.243 12 H -0.276 1.276 13 N -0.693 5.693 14 C 0.544 3.456 15 O -0.576 6.576 16 C -0.153 4.153 17 C -0.048 4.048 18 C -0.117 4.117 19 C -0.008 4.008 20 C -0.139 4.139 21 C -0.207 4.207 22 C 0.516 3.484 23 F -0.183 7.183 24 F -0.172 7.172 25 F -0.173 7.173 26 C -0.024 4.024 27 H 0.046 0.954 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.259 0.741 33 H 0.403 0.597 34 H 0.152 0.848 35 H 0.180 0.820 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.669 8.163 17.918 23.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.175 4.175 3 C 0.146 3.854 4 H 0.041 0.959 5 C -0.650 4.650 6 H 0.062 0.938 7 C -0.203 4.203 8 N -0.563 5.563 9 Si 0.890 3.110 10 H -0.209 1.209 11 H -0.168 1.168 12 H -0.202 1.202 13 N -0.342 5.342 14 C 0.332 3.668 15 O -0.458 6.458 16 C -0.156 4.156 17 C -0.066 4.066 18 C -0.135 4.135 19 C -0.009 4.009 20 C -0.195 4.195 21 C -0.208 4.208 22 C 0.462 3.538 23 F -0.164 7.164 24 F -0.153 7.153 25 F -0.154 7.154 26 C -0.044 4.044 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.240 0.760 34 H 0.169 0.831 35 H 0.197 0.803 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.154 7.617 15.693 22.464 hybrid contribution 0.411 0.646 1.487 1.672 sum -13.743 8.264 17.180 23.501 Atomic orbital electron populations 1.21779 0.95710 1.00417 1.01331 1.22255 0.95201 0.98236 1.01771 1.18815 0.93691 0.89758 0.83127 0.95924 1.22264 0.91262 1.48181 1.03343 0.93808 1.26722 0.97672 0.92110 1.03810 1.70975 1.08015 1.43198 1.34086 0.83767 0.75261 0.78611 0.73340 1.20858 1.16795 1.20156 1.45993 1.15041 1.55723 1.17463 1.18577 0.82060 0.78485 0.87696 1.90726 1.51764 1.61244 1.42098 1.19881 0.96366 1.04428 0.94935 1.21850 0.98824 0.94254 0.91703 1.21395 0.95958 0.97603 0.98497 1.20237 0.92665 0.93089 0.94864 1.21287 1.03483 1.01812 0.92883 1.19815 0.94734 1.08621 0.97663 1.18119 0.85594 0.76554 0.73554 1.93180 1.80198 1.95376 1.47665 1.93175 1.81444 1.82870 1.57820 1.93214 1.95801 1.32867 1.93528 1.20989 0.95468 0.91632 0.96272 0.93496 0.94126 0.92425 0.92119 0.92423 0.93141 0.76035 0.83054 0.80280 0.88466 0.90922 0.87496 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 8.53 71.98 0.61 -4.60 16 2 C -0.14 -5.80 5.27 30.59 0.16 -5.64 16 3 C 0.25 11.61 1.82 44.25 0.08 11.69 16 4 H 0.02 1.16 6.25 -2.39 -0.01 1.15 16 5 C -0.61 -32.44 9.01 25.60 0.23 -32.21 16 6 H 0.04 2.42 7.96 -2.91 -0.02 2.40 16 7 C 0.00 -0.11 5.32 84.66 0.45 0.34 16 8 N -0.93 -55.07 13.70 21.45 0.29 -54.78 16 9 Si 1.07 49.69 26.27 68.60 1.80 51.50 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.24 -10.30 5.67 99.48 0.56 -9.73 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 N -0.69 -26.71 4.98 -448.97 -2.23 -28.94 16 14 C 0.54 20.27 6.37 86.78 0.55 20.82 16 15 O -0.58 -25.24 13.49 -3.90 -0.05 -25.29 16 16 C -0.15 -4.38 5.87 -20.09 -0.12 -4.49 16 17 C -0.05 -0.99 9.54 22.53 0.21 -0.78 16 18 C -0.12 -1.77 9.68 22.23 0.22 -1.55 16 19 C -0.01 -0.13 5.85 -19.81 -0.12 -0.25 16 20 C -0.14 -1.49 8.97 71.23 0.64 -0.85 16 21 C -0.21 -4.58 5.37 -19.90 -0.11 -4.69 16 22 C 0.52 11.06 2.81 71.24 0.20 11.26 16 23 F -0.18 -4.48 15.97 44.97 0.72 -3.76 16 24 F -0.17 -3.44 15.32 44.97 0.69 -2.75 16 25 F -0.17 -3.51 16.42 44.97 0.74 -2.77 16 26 C -0.02 -0.67 8.98 22.53 0.20 -0.47 16 27 H 0.05 1.81 5.63 -2.39 -0.01 1.80 16 28 H 0.04 1.65 7.88 -2.38 -0.02 1.63 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.06 2.70 4.74 -2.39 -0.01 2.68 16 31 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.26 15.34 8.73 -92.71 -0.81 14.53 16 33 H 0.40 13.37 6.56 -92.71 -0.61 12.76 16 34 H 0.15 2.70 6.41 -2.91 -0.02 2.68 16 35 H 0.18 1.33 8.06 -2.91 -0.02 1.30 16 36 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 0.89 5.49 -2.39 -0.01 0.88 16 38 H 0.11 0.64 8.08 -2.38 -0.02 0.62 16 39 H 0.13 4.04 6.74 -2.91 -0.02 4.02 16 Total: -1.00 -66.20 326.34 5.50 -60.70 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.33 Total: 17.54 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 3.22 Total: -11.44 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -1.94 Total: -83.72 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.05 Total: -25.29 kcal Atomic # 9 Polarization: -11.43 SS G_CDS: 2.15 Total: -9.28 kcal Atomic # 14 Polarization: 49.69 SS G_CDS: 1.80 Total: 51.50 kcal Total: -66.20 5.50 -60.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529033821.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.790 kcal (2) G-P(sol) polarization free energy of solvation -66.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds