Wall clock time and date at job start Tue Mar 31 2020 11:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47087 * 2 1 4 4 C 1.50695 * 109.47664 * 239.99680 * 2 1 3 5 5 O 1.21292 * 120.00337 * 255.87767 * 4 2 1 6 6 N 1.34776 * 119.99952 * 75.86944 * 4 2 1 7 7 C 1.46499 * 120.00017 * 2.91576 * 6 4 2 8 8 C 1.50704 * 109.47013 * 93.54747 * 7 6 4 9 9 H 1.07993 * 120.00010 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99657 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99644 * 180.02562 * 10 8 7 12 12 Si 1.86794 * 120.00272 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47430 * 89.99908 * 12 10 8 14 14 H 1.48502 * 109.47254 * 210.00392 * 12 10 8 15 15 H 1.48503 * 109.47291 * 329.99843 * 12 10 8 16 16 C 1.40032 * 119.99979 * 182.91009 * 6 4 2 17 17 C 1.38851 * 120.04367 * 352.75997 * 16 6 4 18 18 C 1.38119 * 119.95043 * 179.76958 * 17 16 6 19 19 C 1.38470 * 120.04640 * 0.49851 * 18 17 16 20 20 F 1.35100 * 119.95433 * 179.72305 * 19 18 17 21 21 C 1.38468 * 120.09055 * 359.75216 * 19 18 17 22 22 C 1.38117 * 120.04846 * 359.97438 * 21 19 18 23 23 C 1.53003 * 109.47093 * 119.99105 * 2 1 3 24 24 C 1.52998 * 109.47395 * 295.00532 * 23 2 1 25 25 F 1.39903 * 109.46916 * 55.00829 * 23 2 1 26 26 F 1.39904 * 109.47194 * 175.00074 * 23 2 1 27 27 H 1.09004 * 109.46761 * 175.81617 * 1 2 3 28 28 H 1.08997 * 109.47143 * 55.82207 * 1 2 3 29 29 H 1.08998 * 109.47451 * 295.81441 * 1 2 3 30 30 H 1.09005 * 109.47074 * 213.54818 * 7 6 4 31 31 H 1.08998 * 109.47287 * 333.54537 * 7 6 4 32 32 H 0.97001 * 119.99999 * 180.02562 * 11 10 8 33 33 H 1.07999 * 120.02395 * 0.02562 * 17 16 6 34 34 H 1.08005 * 119.97256 * 180.22689 * 18 17 16 35 35 H 1.08007 * 119.98134 * 179.97438 * 21 19 18 36 36 H 1.07994 * 120.02577 * 179.97438 * 22 21 19 37 37 H 1.08995 * 109.47240 * 59.99878 * 24 23 2 38 38 H 1.09003 * 109.47136 * 179.97438 * 24 23 2 39 39 H 1.09000 * 109.47163 * 299.99970 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.4763 -1.8358 -1.1422 6 7 1.9884 -0.0954 -2.4288 7 6 1.5119 1.2865 -2.5259 8 6 2.6856 2.2289 -2.4534 9 1 3.6865 1.8376 -2.3462 10 6 2.4818 3.5907 -2.5251 11 7 3.5061 4.4131 -2.4623 12 14 0.7507 4.2674 -2.7113 13 1 0.1632 4.5008 -1.3675 14 1 0.7981 5.5489 -3.4602 15 1 -0.0855 3.2906 -3.4542 16 6 2.3984 -0.7773 -3.5811 17 6 2.9898 -2.0290 -3.4748 18 6 3.3891 -2.7019 -4.6130 19 6 3.2095 -2.1246 -5.8587 20 9 3.6058 -2.7821 -6.9704 21 6 2.6246 -0.8742 -5.9665 22 6 2.2187 -0.2003 -4.8313 23 6 2.0400 -0.7211 1.2494 24 6 1.6351 0.0692 2.4954 25 9 1.4822 -2.0028 1.3084 26 9 3.4343 -0.8215 1.1934 27 1 -0.3633 -1.0250 -0.0750 28 1 -0.3633 0.5773 -0.8502 29 1 -0.3634 0.4475 0.9251 30 1 0.9920 1.4258 -3.4738 31 1 0.8281 1.4937 -1.7028 32 1 3.3627 5.3711 -2.5123 33 1 3.1337 -2.4779 -2.5031 34 1 3.8459 -3.6772 -4.5309 35 1 2.4857 -0.4253 -6.9390 36 1 1.7630 0.7751 -4.9157 37 1 0.5489 0.1473 2.5390 38 1 1.9981 -0.4448 3.3854 39 1 2.0697 1.0678 2.4494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573508597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:27 Heat of formation + Delta-G solvation = -138.188572 kcal Electronic energy + Delta-G solvation = -27427.240310 eV Core-core repulsion = 23113.949927 eV Total energy + Delta-G solvation = -4313.290383 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.64928 -48.48412 -46.61664 -40.52328 -37.96228 -35.57617 -34.53174 -32.75424 -30.74846 -30.19087 -29.00078 -27.88899 -25.42183 -23.48994 -22.85855 -22.05582 -20.91312 -19.28768 -17.59176 -17.37089 -17.23803 -17.06395 -16.75444 -16.00556 -15.83991 -15.25762 -15.12807 -14.87214 -14.48975 -14.17385 -13.83776 -13.56389 -13.21661 -13.17551 -12.90207 -12.85745 -12.79581 -12.65945 -12.64979 -12.33775 -12.18904 -12.05144 -11.79057 -11.72448 -11.50373 -11.31412 -10.85068 -10.77061 -10.62177 -10.56971 -9.89844 -9.31141 -8.96306 -8.88005 -8.69145 -7.32293 -6.38722 -4.43792 1.49231 1.67078 2.87882 3.00971 3.08411 3.10859 3.23200 3.90117 4.08087 4.10586 4.16153 4.44738 4.55655 4.70964 4.87121 4.92602 5.09165 5.19430 5.22202 5.30176 5.46684 5.59047 5.66659 5.69124 5.72673 5.77232 5.85910 5.91796 6.06693 6.20466 6.32224 6.38203 6.58955 6.64105 6.71534 6.97176 7.16415 7.50936 7.70842 8.15485 8.42229 8.68433 9.16476 10.73337 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.009181 B = 0.006821 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.070411 B = 4103.812272 C = 6411.982949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.157 4.157 3 H 0.142 0.858 4 C 0.528 3.472 5 O -0.521 6.521 6 N -0.525 5.525 7 C 0.192 3.808 8 C -0.550 4.550 9 H 0.082 0.918 10 C 0.082 3.918 11 N -0.880 5.880 12 Si 0.866 3.134 13 H -0.270 1.270 14 H -0.280 1.280 15 H -0.263 1.263 16 C 0.164 3.836 17 C -0.149 4.149 18 C -0.135 4.135 19 C 0.054 3.946 20 F -0.151 7.151 21 C -0.133 4.133 22 C -0.118 4.118 23 C 0.309 3.691 24 C -0.196 4.196 25 F -0.193 7.193 26 F -0.193 7.193 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.269 0.731 33 H 0.188 0.812 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.142 0.858 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.381 -6.827 3.908 10.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 H 0.159 0.841 4 C 0.318 3.682 5 O -0.400 6.400 6 N -0.243 5.243 7 C 0.072 3.928 8 C -0.588 4.588 9 H 0.100 0.900 10 C -0.123 4.123 11 N -0.517 5.517 12 Si 0.691 3.309 13 H -0.195 1.195 14 H -0.205 1.205 15 H -0.187 1.187 16 C 0.069 3.931 17 C -0.168 4.168 18 C -0.155 4.155 19 C 0.034 3.966 20 F -0.130 7.130 21 C -0.152 4.152 22 C -0.138 4.138 23 C 0.273 3.727 24 C -0.253 4.253 25 F -0.174 7.174 26 F -0.174 7.174 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.204 0.796 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.160 0.840 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.091 -7.193 3.988 10.859 hybrid contribution -0.520 0.629 -0.537 0.978 sum -7.611 -6.563 3.450 10.626 Atomic orbital electron populations 1.21898 0.90767 1.03784 1.04141 1.22478 0.99871 1.03831 0.91657 0.84075 1.20196 0.78127 0.85618 0.84286 1.90329 1.45746 1.19131 1.84793 1.45574 1.59149 1.15049 1.04522 1.20270 0.96959 0.76712 0.98831 1.21238 0.93949 0.90305 1.53263 0.90004 1.24842 0.96861 0.96603 0.94027 1.69874 1.30257 1.03542 1.47986 0.87015 0.84934 0.79669 0.79249 1.19512 1.20492 1.18729 1.18016 0.96528 0.92212 0.86389 1.22648 0.98009 0.94291 1.01870 1.21071 1.02583 1.01029 0.90770 1.17708 1.03570 0.92783 0.82529 1.91430 1.89251 1.80829 1.51506 1.20829 1.01129 0.93774 0.99473 1.20850 1.02126 1.00888 0.89941 1.20648 0.75259 0.80445 0.96382 1.22831 1.04480 1.02040 0.95962 1.93004 1.84908 1.42162 1.97375 1.93042 1.30466 1.96429 1.97444 0.91177 0.90192 0.90454 0.93768 0.93709 0.92032 0.79574 0.85219 0.84997 0.83999 0.89082 0.89945 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.52 37.16 0.32 -1.52 16 2 C -0.16 -2.47 1.56 -91.77 -0.14 -2.61 16 3 H 0.14 2.31 7.15 -51.92 -0.37 1.94 16 4 C 0.53 10.13 6.54 -10.99 -0.07 10.06 16 5 O -0.52 -10.79 11.44 5.55 0.06 -10.73 16 6 N -0.52 -10.38 2.69 -114.72 -0.31 -10.69 16 7 C 0.19 3.87 3.33 -5.19 -0.02 3.85 16 8 C -0.55 -13.52 9.80 -34.44 -0.34 -13.85 16 9 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 10 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 11 N -0.88 -24.21 13.96 55.43 0.77 -23.44 16 12 Si 0.87 17.96 27.47 -169.99 -4.67 13.29 16 13 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 14 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 15 H -0.26 -5.07 6.54 56.52 0.37 -4.70 16 16 C 0.16 3.22 6.48 -83.66 -0.54 2.68 16 17 C -0.15 -2.80 9.04 -39.40 -0.36 -3.15 16 18 C -0.14 -2.27 10.02 -39.54 -0.40 -2.67 16 19 C 0.05 0.91 7.30 -39.41 -0.29 0.62 16 20 F -0.15 -2.47 17.26 2.25 0.04 -2.43 16 21 C -0.13 -2.18 10.02 -39.54 -0.40 -2.58 16 22 C -0.12 -2.14 9.26 -39.40 -0.36 -2.50 16 23 C 0.31 4.69 1.51 -26.73 -0.04 4.65 16 24 C -0.20 -2.07 9.14 37.16 0.34 -1.73 16 25 F -0.19 -3.16 15.51 2.25 0.03 -3.12 16 26 F -0.19 -3.52 16.23 2.25 0.04 -3.48 16 27 H 0.07 0.87 7.82 -51.93 -0.41 0.46 16 28 H 0.08 0.99 6.16 -51.93 -0.32 0.67 16 29 H 0.08 0.73 6.38 -51.93 -0.33 0.40 16 30 H 0.04 0.87 5.20 -51.93 -0.27 0.60 16 31 H 0.05 0.82 3.88 -51.93 -0.20 0.61 16 32 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 33 H 0.19 3.70 4.55 -56.12 -0.26 3.45 16 34 H 0.13 1.87 8.06 -52.48 -0.42 1.45 16 35 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 36 H 0.14 2.54 6.09 -52.49 -0.32 2.22 16 37 H 0.09 0.76 6.48 -51.93 -0.34 0.43 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 325.76 15.07 4.91 4.91 Total: -1.00 -29.12 325.76 -5.61 -34.73 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -4.09 Total: 7.78 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -2.39 Total: -6.81 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.47 Total: -34.13 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.06 Total: -10.73 kcal Atomic # 9 Polarization: -9.15 SS G_CDS: 0.11 Total: -9.04 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -4.67 Total: 13.29 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.12 -5.61 -34.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573508597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.462 kcal (2) G-P(sol) polarization free energy of solvation -29.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds