Wall clock time and date at job start Tue Mar 31 2020 11:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47087 * 2 1 4 4 C 1.50695 * 109.47664 * 239.99680 * 2 1 3 5 5 O 1.21292 * 120.00337 * 255.87767 * 4 2 1 6 6 N 1.34776 * 119.99952 * 75.86944 * 4 2 1 7 7 C 1.46499 * 120.00017 * 2.91576 * 6 4 2 8 8 C 1.50704 * 109.47013 * 93.54747 * 7 6 4 9 9 H 1.07993 * 120.00010 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99657 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99644 * 180.02562 * 10 8 7 12 12 Si 1.86794 * 120.00272 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47430 * 89.99908 * 12 10 8 14 14 H 1.48502 * 109.47254 * 210.00392 * 12 10 8 15 15 H 1.48503 * 109.47291 * 329.99843 * 12 10 8 16 16 C 1.40032 * 119.99979 * 182.91009 * 6 4 2 17 17 C 1.38851 * 120.04367 * 352.75997 * 16 6 4 18 18 C 1.38119 * 119.95043 * 179.76958 * 17 16 6 19 19 C 1.38470 * 120.04640 * 0.49851 * 18 17 16 20 20 F 1.35100 * 119.95433 * 179.72305 * 19 18 17 21 21 C 1.38468 * 120.09055 * 359.75216 * 19 18 17 22 22 C 1.38117 * 120.04846 * 359.97438 * 21 19 18 23 23 C 1.53003 * 109.47093 * 119.99105 * 2 1 3 24 24 C 1.52998 * 109.47395 * 295.00532 * 23 2 1 25 25 F 1.39903 * 109.46916 * 55.00829 * 23 2 1 26 26 F 1.39904 * 109.47194 * 175.00074 * 23 2 1 27 27 H 1.09004 * 109.46761 * 175.81617 * 1 2 3 28 28 H 1.08997 * 109.47143 * 55.82207 * 1 2 3 29 29 H 1.08998 * 109.47451 * 295.81441 * 1 2 3 30 30 H 1.09005 * 109.47074 * 213.54818 * 7 6 4 31 31 H 1.08998 * 109.47287 * 333.54537 * 7 6 4 32 32 H 0.97001 * 119.99999 * 180.02562 * 11 10 8 33 33 H 1.07999 * 120.02395 * 0.02562 * 17 16 6 34 34 H 1.08005 * 119.97256 * 180.22689 * 18 17 16 35 35 H 1.08007 * 119.98134 * 179.97438 * 21 19 18 36 36 H 1.07994 * 120.02577 * 179.97438 * 22 21 19 37 37 H 1.08995 * 109.47240 * 59.99878 * 24 23 2 38 38 H 1.09003 * 109.47136 * 179.97438 * 24 23 2 39 39 H 1.09000 * 109.47163 * 299.99970 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.4763 -1.8358 -1.1422 6 7 1.9884 -0.0954 -2.4288 7 6 1.5119 1.2865 -2.5259 8 6 2.6856 2.2289 -2.4534 9 1 3.6865 1.8376 -2.3462 10 6 2.4818 3.5907 -2.5251 11 7 3.5061 4.4131 -2.4623 12 14 0.7507 4.2674 -2.7113 13 1 0.1632 4.5008 -1.3675 14 1 0.7981 5.5489 -3.4602 15 1 -0.0855 3.2906 -3.4542 16 6 2.3984 -0.7773 -3.5811 17 6 2.9898 -2.0290 -3.4748 18 6 3.3891 -2.7019 -4.6130 19 6 3.2095 -2.1246 -5.8587 20 9 3.6058 -2.7821 -6.9704 21 6 2.6246 -0.8742 -5.9665 22 6 2.2187 -0.2003 -4.8313 23 6 2.0400 -0.7211 1.2494 24 6 1.6351 0.0692 2.4954 25 9 1.4822 -2.0028 1.3084 26 9 3.4343 -0.8215 1.1934 27 1 -0.3633 -1.0250 -0.0750 28 1 -0.3633 0.5773 -0.8502 29 1 -0.3634 0.4475 0.9251 30 1 0.9920 1.4258 -3.4738 31 1 0.8281 1.4937 -1.7028 32 1 3.3627 5.3711 -2.5123 33 1 3.1337 -2.4779 -2.5031 34 1 3.8459 -3.6772 -4.5309 35 1 2.4857 -0.4253 -6.9390 36 1 1.7630 0.7751 -4.9157 37 1 0.5489 0.1473 2.5390 38 1 1.9981 -0.4448 3.3854 39 1 2.0697 1.0678 2.4494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573508597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:27 Heat of formation + Delta-G solvation = -154.017763 kcal Electronic energy + Delta-G solvation = -27427.926715 eV Core-core repulsion = 23113.949927 eV Total energy + Delta-G solvation = -4313.976788 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.90862 -49.82279 -47.90288 -41.98738 -39.36905 -37.12656 -35.71436 -34.62822 -32.15034 -31.37939 -30.39912 -29.42830 -26.54066 -25.10686 -24.26038 -23.50366 -22.21072 -20.66805 -19.17449 -18.94053 -18.72476 -18.36368 -18.16265 -17.28537 -17.11466 -16.66815 -16.50789 -16.30457 -16.11051 -15.56606 -15.18708 -14.85732 -14.68310 -14.56091 -14.37357 -14.17327 -14.14241 -13.92494 -13.68534 -13.58409 -13.52808 -13.34182 -13.05018 -12.96481 -12.86399 -12.60598 -12.37030 -12.18519 -12.09634 -11.76934 -11.72500 -10.90602 -10.80803 -10.37708 -10.08422 -8.80592 -8.31379 -6.42867 0.07234 0.27437 1.41506 1.42513 1.44481 1.53170 1.81175 2.33732 2.69091 2.72997 3.00702 3.04753 3.20313 3.33579 3.44130 3.71901 3.88260 3.95091 4.06518 4.21519 4.24411 4.30825 4.41294 4.56405 4.60809 4.69424 4.71793 4.78289 4.81611 4.99853 5.04143 5.17434 5.18184 5.19971 5.28998 5.34672 5.56376 6.03078 6.07961 6.37188 6.63353 6.93701 7.22603 8.84783 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.009181 B = 0.006821 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.070411 B = 4103.812272 C = 6411.982949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.156 4.156 3 H 0.134 0.866 4 C 0.515 3.485 5 O -0.544 6.544 6 N -0.531 5.531 7 C 0.199 3.801 8 C -0.547 4.547 9 H 0.023 0.977 10 C 0.025 3.975 11 N -0.938 5.938 12 Si 0.936 3.064 13 H -0.248 1.248 14 H -0.289 1.289 15 H -0.233 1.233 16 C 0.139 3.861 17 C -0.164 4.164 18 C -0.131 4.131 19 C 0.053 3.947 20 F -0.146 7.146 21 C -0.125 4.125 22 C -0.128 4.128 23 C 0.296 3.704 24 C -0.187 4.187 25 F -0.202 7.202 26 F -0.219 7.219 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.115 0.885 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.270 0.730 33 H 0.175 0.825 34 H 0.152 0.848 35 H 0.161 0.839 36 H 0.144 0.856 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.280 -6.613 3.960 12.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 H 0.151 0.849 4 C 0.306 3.694 5 O -0.425 6.425 6 N -0.250 5.250 7 C 0.079 3.921 8 C -0.585 4.585 9 H 0.041 0.959 10 C -0.175 4.175 11 N -0.576 5.576 12 Si 0.757 3.243 13 H -0.172 1.172 14 H -0.215 1.215 15 H -0.156 1.156 16 C 0.043 3.957 17 C -0.184 4.184 18 C -0.150 4.150 19 C 0.033 3.967 20 F -0.124 7.124 21 C -0.144 4.144 22 C -0.148 4.148 23 C 0.260 3.740 24 C -0.245 4.245 25 F -0.183 7.183 26 F -0.200 7.200 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.133 0.867 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.191 0.809 34 H 0.170 0.830 35 H 0.178 0.822 36 H 0.162 0.838 37 H 0.139 0.861 38 H 0.112 0.888 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.998 -7.014 4.043 12.865 hybrid contribution 0.539 0.460 -0.614 0.938 sum -9.459 -6.554 3.429 12.008 Atomic orbital electron populations 1.21987 0.87699 1.04285 1.06293 1.22598 1.02364 1.02690 0.90160 0.84860 1.20947 0.77654 0.85688 0.85079 1.90320 1.46651 1.20263 1.85220 1.45643 1.59443 1.14866 1.05025 1.20180 0.95441 0.75967 1.00486 1.21276 0.92989 0.91430 1.52828 0.95893 1.25791 1.01801 0.96629 0.93257 1.70056 1.33470 1.03954 1.50134 0.85896 0.79131 0.78778 0.80511 1.17169 1.21490 1.15566 1.18361 0.97451 0.92826 0.87057 1.22567 0.99116 0.94617 1.02079 1.21271 1.01718 1.01723 0.90280 1.17761 1.03391 0.92955 0.82594 1.91447 1.89157 1.80722 1.51118 1.21111 0.99647 0.93402 1.00201 1.20950 1.02758 1.01135 0.89959 1.21246 0.73928 0.80539 0.98302 1.22872 1.06469 1.01449 0.93661 1.92980 1.84846 1.43009 1.97492 1.92989 1.32804 1.96563 1.97662 0.91253 0.89874 0.86677 0.92418 0.90752 0.92047 0.80900 0.83029 0.82169 0.83805 0.86080 0.88795 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.52 71.98 0.61 -2.56 16 2 C -0.16 -4.79 1.56 -11.54 -0.02 -4.81 16 3 H 0.13 4.28 7.15 -2.38 -0.02 4.27 16 4 C 0.52 20.05 6.54 87.66 0.57 20.62 16 5 O -0.54 -23.30 11.44 -3.07 -0.04 -23.34 16 6 N -0.53 -21.21 2.69 -635.23 -1.71 -22.91 16 7 C 0.20 7.83 3.33 85.63 0.28 8.11 16 8 C -0.55 -27.49 9.80 25.60 0.25 -27.24 16 9 H 0.02 1.39 8.06 -2.91 -0.02 1.36 16 10 C 0.03 1.27 5.47 84.66 0.46 1.73 16 11 N -0.94 -53.11 13.96 21.45 0.30 -52.81 16 12 Si 0.94 35.46 27.47 68.60 1.88 37.34 16 13 H -0.25 -8.53 7.11 99.48 0.71 -7.83 16 14 H -0.29 -11.39 7.11 99.48 0.71 -10.69 16 15 H -0.23 -7.66 6.54 99.48 0.65 -7.01 16 16 C 0.14 5.49 6.48 38.12 0.25 5.74 16 17 C -0.16 -6.30 9.04 22.39 0.20 -6.10 16 18 C -0.13 -4.33 10.02 22.30 0.22 -4.10 16 19 C 0.05 1.71 7.30 22.38 0.16 1.87 16 20 F -0.15 -4.47 17.26 44.97 0.78 -3.69 16 21 C -0.12 -3.91 10.02 22.30 0.22 -3.69 16 22 C -0.13 -4.56 9.26 22.39 0.21 -4.36 16 23 C 0.30 8.78 1.51 30.59 0.05 8.83 16 24 C -0.19 -3.50 9.14 71.98 0.66 -2.84 16 25 F -0.20 -6.47 15.51 44.97 0.70 -5.77 16 26 F -0.22 -8.22 16.23 44.97 0.73 -7.49 16 27 H 0.07 1.54 7.82 -2.38 -0.02 1.53 16 28 H 0.08 1.76 6.16 -2.39 -0.01 1.75 16 29 H 0.11 1.62 6.38 -2.39 -0.02 1.61 16 30 H 0.06 2.14 5.20 -2.38 -0.01 2.12 16 31 H 0.07 2.50 3.88 -2.39 -0.01 2.50 16 32 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 33 H 0.17 7.18 4.55 -60.45 -0.28 6.90 16 34 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 35 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 36 H 0.14 5.01 6.09 -2.91 -0.02 4.99 16 37 H 0.12 1.51 6.48 -2.39 -0.02 1.49 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -67.07 325.76 7.57 -59.49 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.79 Total: 27.98 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 4.14 Total: -8.81 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -1.41 Total: -75.72 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.04 Total: -23.34 kcal Atomic # 9 Polarization: -19.16 SS G_CDS: 2.20 Total: -16.95 kcal Atomic # 14 Polarization: 35.46 SS G_CDS: 1.88 Total: 37.34 kcal Total: -67.07 7.57 -59.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573508597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.523 kcal (2) G-P(sol) polarization free energy of solvation -67.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds