Wall clock time and date at job start Tue Mar 31 2020 11:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47341 * 2 1 4 4 C 1.53005 * 109.46977 * 239.99623 * 2 1 3 5 5 C 1.52997 * 109.46786 * 65.00595 * 4 2 1 6 6 F 1.39902 * 109.46876 * 174.99734 * 5 4 2 7 7 F 1.39899 * 109.47056 * 294.99454 * 5 4 2 8 8 C 1.50708 * 109.47254 * 120.00222 * 2 1 3 9 9 O 1.21289 * 120.00049 * 82.32332 * 8 2 1 10 10 N 1.34775 * 119.99319 * 262.32955 * 8 2 1 11 11 C 1.46497 * 120.00606 * 7.40446 * 10 8 2 12 12 C 1.50699 * 109.47272 * 82.67244 * 11 10 8 13 13 H 1.08000 * 119.99836 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00448 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99367 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00539 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46908 * 89.99865 * 16 14 12 18 18 H 1.48496 * 109.47728 * 210.00065 * 16 14 12 19 19 H 1.48502 * 109.46841 * 330.00327 * 16 14 12 20 20 C 1.40030 * 119.99578 * 187.40251 * 10 8 2 21 21 C 1.38855 * 120.04245 * 7.50541 * 20 10 8 22 22 C 1.38124 * 119.94930 * 179.76512 * 21 20 10 23 23 C 1.38467 * 120.04482 * 0.51027 * 22 21 20 24 24 F 1.35106 * 119.95416 * 179.72389 * 23 22 21 25 25 C 1.38468 * 120.09343 * 359.74302 * 23 22 21 26 26 C 1.38113 * 120.04658 * 359.97438 * 25 23 22 27 27 H 1.09003 * 109.47145 * 50.05034 * 1 2 3 28 28 H 1.08996 * 109.46837 * 290.04688 * 1 2 3 29 29 H 1.09003 * 109.47179 * 170.05067 * 1 2 3 30 30 H 1.09003 * 109.46767 * 185.00047 * 4 2 1 31 31 H 1.08995 * 109.47212 * 305.00046 * 4 2 1 32 32 H 1.08995 * 109.47726 * 54.99756 * 5 4 2 33 33 H 1.08999 * 109.47187 * 202.67573 * 11 10 8 34 34 H 1.08999 * 109.46949 * 322.67414 * 11 10 8 35 35 H 0.97001 * 119.99705 * 180.02562 * 15 14 12 36 36 H 1.07994 * 120.02791 * 0.02562 * 21 20 10 37 37 H 1.08003 * 119.97430 * 180.23249 * 22 21 20 38 38 H 1.08004 * 119.97908 * 179.97438 * 25 23 22 39 39 H 1.07995 * 120.02699 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6353 0.0689 -2.4953 6 9 2.1976 -0.5278 -3.6288 7 9 0.2413 0.0721 -2.6130 8 6 2.0324 -0.7105 1.2305 9 8 2.1023 -1.9213 1.2456 10 7 2.4039 -0.0003 2.3140 11 6 2.1690 1.4450 2.3586 12 6 0.7493 1.7102 2.7888 13 1 0.0879 0.8847 3.0068 14 6 0.2942 3.0067 2.9030 15 7 1.0991 4.0119 2.6361 16 14 -1.4658 3.3354 3.4356 17 1 -1.5222 3.4484 4.9153 18 1 -1.9396 4.6029 2.8240 19 1 -2.3346 2.2162 2.9911 20 6 3.0144 -0.6441 3.3974 21 6 3.3790 -1.9801 3.2966 22 6 3.9855 -2.6119 4.3647 23 6 4.2203 -1.9168 5.5390 24 9 4.8086 -2.5381 6.5846 25 6 3.8527 -0.5859 5.6434 26 6 3.2513 0.0512 4.5757 27 1 -0.3633 0.6599 -0.7878 28 1 -0.3633 0.3523 0.9654 29 1 -0.3634 -1.0122 -0.1776 30 1 3.1263 -0.7996 -1.2055 31 1 1.6054 -1.7199 -1.2951 32 1 1.9950 1.0941 -2.4081 33 1 2.8559 1.9030 3.0702 34 1 2.3342 1.8706 1.3688 35 1 0.7792 4.9241 2.7168 36 1 3.1924 -2.5237 2.3822 37 1 4.2727 -3.6500 4.2853 38 1 4.0363 -0.0456 6.5604 39 1 2.9643 1.0891 4.6577 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579085934.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:45 Heat of formation + Delta-G solvation = -154.399853 kcal Electronic energy + Delta-G solvation = -26753.865562 eV Core-core repulsion = 22439.872205 eV Total energy + Delta-G solvation = -4313.993356 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.89301 -48.50341 -46.89939 -40.50045 -38.05246 -35.38922 -34.74346 -32.80790 -30.73776 -29.61549 -28.49410 -27.40369 -24.59785 -23.74041 -22.91216 -22.20618 -21.11668 -18.93958 -17.68377 -17.34204 -17.24301 -17.09222 -16.78530 -16.29359 -15.91014 -15.23824 -15.10119 -14.79590 -14.50025 -14.30775 -13.96663 -13.72165 -13.48324 -13.31871 -13.18436 -12.79059 -12.72280 -12.71113 -12.41341 -12.24595 -11.99731 -11.65531 -11.37538 -11.18977 -11.04516 -11.04227 -10.78403 -10.67473 -10.55567 -10.35252 -10.12737 -9.25950 -8.95982 -8.71418 -8.70742 -7.30935 -6.38245 -4.46744 1.48535 1.64682 2.96768 3.12809 3.21208 3.23358 3.34498 3.94533 4.11706 4.19587 4.33286 4.58256 4.63770 4.69818 4.94376 4.96840 5.16674 5.20806 5.27373 5.38699 5.57050 5.70218 5.74593 5.86358 5.90941 5.97995 6.24772 6.28643 6.32469 6.50142 6.60736 6.66105 6.69004 6.77668 6.91788 7.06842 7.49828 7.58071 7.76658 7.88688 8.49316 8.62871 9.21574 10.68084 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.009129 B = 0.005578 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.463306 B = 5018.606853 C = 7523.526776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.102 4.102 3 H 0.109 0.891 4 C -0.156 4.156 5 C 0.264 3.736 6 F -0.211 7.211 7 F -0.200 7.200 8 C 0.530 3.470 9 O -0.542 6.542 10 N -0.534 5.534 11 C 0.226 3.774 12 C -0.541 4.541 13 H 0.065 0.935 14 C 0.071 3.929 15 N -0.887 5.887 16 Si 0.896 3.104 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.271 1.271 20 C 0.162 3.838 21 C -0.147 4.147 22 C -0.136 4.136 23 C 0.051 3.949 24 F -0.152 7.152 25 C -0.132 4.132 26 C -0.120 4.120 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.268 0.732 36 H 0.180 0.820 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.770 -5.179 -4.084 7.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.123 4.123 3 H 0.127 0.873 4 C -0.194 4.194 5 C 0.210 3.790 6 F -0.192 7.192 7 F -0.182 7.182 8 C 0.321 3.679 9 O -0.422 6.422 10 N -0.253 5.253 11 C 0.107 3.893 12 C -0.579 4.579 13 H 0.083 0.917 14 C -0.133 4.133 15 N -0.524 5.524 16 Si 0.723 3.277 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.195 1.195 20 C 0.066 3.934 21 C -0.166 4.166 22 C -0.155 4.155 23 C 0.031 3.969 24 F -0.131 7.131 25 C -0.152 4.152 26 C -0.140 4.140 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.130 0.870 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.196 0.804 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.770 -5.552 -4.162 7.897 hybrid contribution -0.911 0.364 0.633 1.167 sum 2.859 -5.188 -3.529 6.895 Atomic orbital electron populations 1.22001 0.91324 1.02255 1.05121 1.21164 0.99416 1.01037 0.90651 0.87312 1.22561 1.03571 1.01279 0.92025 1.21921 0.74945 0.98846 0.83263 1.92966 1.84954 1.86561 1.54720 1.92958 1.31261 1.97700 1.96252 1.20511 0.76102 0.86833 0.84477 1.90339 1.54375 1.14422 1.83089 1.46091 1.53555 1.11964 1.13645 1.19803 0.98151 0.71881 0.99448 1.21327 0.96166 0.92573 1.47849 0.91708 1.24882 0.98085 0.95755 0.94583 1.69901 1.35809 0.99296 1.47414 0.86507 0.84087 0.78039 0.79061 1.20368 1.20896 1.19534 1.18112 0.94754 0.92236 0.88290 1.22325 0.98857 0.94103 1.01358 1.21031 1.01725 1.00400 0.92388 1.17700 1.01848 0.91915 0.85420 1.91430 1.82234 1.82894 1.56528 1.20869 1.01352 0.93021 0.99940 1.20994 1.00428 1.01722 0.90900 0.90657 0.89733 0.92797 0.88849 0.88472 0.87011 0.93255 0.93455 0.92208 0.80410 0.85341 0.85052 0.83394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.27 37.16 0.31 -2.10 16 2 C -0.10 -1.58 2.22 -91.77 -0.20 -1.78 16 3 H 0.11 1.68 5.78 -51.93 -0.30 1.38 16 4 C -0.16 -2.02 4.62 -26.73 -0.12 -2.14 16 5 C 0.26 3.13 5.25 37.16 0.20 3.33 16 6 F -0.21 -2.70 17.34 2.25 0.04 -2.66 16 7 F -0.20 -2.73 14.35 2.25 0.03 -2.70 16 8 C 0.53 9.69 6.43 -10.98 -0.07 9.62 16 9 O -0.54 -10.48 12.97 5.55 0.07 -10.41 16 10 N -0.53 -10.31 2.71 -114.72 -0.31 -10.62 16 11 C 0.23 4.71 4.46 -5.20 -0.02 4.68 16 12 C -0.54 -12.52 7.96 -34.44 -0.27 -12.80 16 13 H 0.06 1.57 7.34 -52.49 -0.39 1.18 16 14 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -22.13 13.29 55.43 0.74 -21.39 16 16 Si 0.90 19.19 29.54 -169.99 -5.02 14.17 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 20 C 0.16 3.06 6.49 -83.66 -0.54 2.52 16 21 C -0.15 -2.59 8.96 -39.39 -0.35 -2.95 16 22 C -0.14 -2.17 10.02 -39.54 -0.40 -2.56 16 23 C 0.05 0.83 7.30 -39.41 -0.29 0.54 16 24 F -0.15 -2.41 17.27 2.25 0.04 -2.37 16 25 C -0.13 -2.12 10.02 -39.54 -0.40 -2.52 16 26 C -0.12 -2.14 9.16 -39.40 -0.36 -2.50 16 27 H 0.07 1.12 6.14 -51.93 -0.32 0.80 16 28 H 0.08 1.57 6.14 -51.93 -0.32 1.25 16 29 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.10 1.33 7.99 -51.93 -0.42 0.91 16 32 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 1.08 6.15 -51.93 -0.32 0.76 16 34 H 0.05 0.99 5.91 -51.93 -0.31 0.68 16 35 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 36 H 0.18 3.25 4.75 -54.95 -0.26 2.99 16 37 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16 38 H 0.13 1.80 8.06 -52.48 -0.42 1.38 16 39 H 0.15 2.73 6.22 -52.49 -0.33 2.41 16 LS Contribution 330.62 15.07 4.98 4.98 Total: -1.00 -25.54 330.62 -6.26 -31.80 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -4.20 Total: 6.24 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -2.63 Total: -7.05 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: 0.43 Total: -32.01 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.41 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 0.11 Total: -7.72 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -25.54 -6.26 -31.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579085934.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.603 kcal (2) G-P(sol) polarization free energy of solvation -25.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds