Wall clock time and date at job start Tue Mar 31 2020 11:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 110.99741 * 2 1 4 4 C 1.50708 * 109.47200 * 66.04769 * 3 2 1 5 5 H 1.08002 * 119.99527 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99951 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00378 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99519 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47605 * 60.00009 * 8 6 4 10 10 H 1.48510 * 109.47169 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47161 * 299.99633 * 8 6 4 12 12 C 1.46901 * 111.00142 * 236.05256 * 2 1 3 13 13 H 1.09003 * 109.47466 * 63.94771 * 12 2 1 14 14 C 1.50693 * 109.47211 * 183.95475 * 12 2 1 15 15 C 1.38230 * 120.00178 * 39.71798 * 14 12 2 16 16 C 1.38241 * 120.00029 * 179.78686 * 15 14 12 17 17 C 1.38229 * 119.99660 * 0.45080 * 16 15 14 18 18 C 1.38234 * 120.00347 * 359.80630 * 17 16 15 19 19 C 1.38230 * 120.00202 * 359.97438 * 18 17 16 20 20 C 1.50707 * 109.46758 * 303.95368 * 12 2 1 21 21 C 1.38241 * 119.98819 * 140.00304 * 20 12 2 22 22 C 1.38215 * 120.01083 * 179.97438 * 21 20 12 23 23 C 1.38349 * 119.98995 * 0.02562 * 22 21 20 24 24 Cl 1.73599 * 120.01575 * 179.97438 * 23 22 21 25 25 C 1.38354 * 119.96925 * 359.97438 * 23 22 21 26 26 C 1.38207 * 119.99100 * 0.02562 * 25 23 22 27 27 H 1.08995 * 109.47041 * 183.95232 * 1 2 3 28 28 H 1.08997 * 109.47299 * 303.95243 * 1 2 3 29 29 H 1.09005 * 109.47317 * 63.95052 * 1 2 3 30 30 H 1.09000 * 109.47486 * 186.04828 * 3 2 1 31 31 H 1.09002 * 109.47822 * 306.04719 * 3 2 1 32 32 H 0.96993 * 120.00030 * 180.02562 * 7 6 4 33 33 H 1.08001 * 120.00005 * 0.02562 * 15 14 12 34 34 H 1.07999 * 120.00106 * 180.27640 * 16 15 14 35 35 H 1.08004 * 119.99801 * 179.83073 * 17 16 15 36 36 H 1.08010 * 120.00245 * 180.02562 * 18 17 16 37 37 H 1.07997 * 120.00471 * 179.97438 * 19 18 17 38 38 H 1.08004 * 119.98956 * 0.24964 * 21 20 12 39 39 H 1.07996 * 120.00054 * 180.02562 * 22 21 20 40 40 H 1.08008 * 120.00263 * 179.97438 * 25 23 22 41 41 H 1.08003 * 119.99806 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2985 5 1 1.0739 1.5114 2.0485 6 6 2.0276 3.3492 1.5289 7 7 2.7136 4.0013 0.6159 8 14 1.5838 4.1863 3.1388 9 1 2.1755 3.4286 4.2705 10 1 2.1158 5.5729 3.1388 11 1 0.1065 4.2236 3.2865 12 6 1.9955 -0.7658 -1.1377 13 1 1.7044 -0.2798 -2.0689 14 6 3.4988 -0.8254 -1.0506 15 6 4.1137 -0.9999 0.1750 16 6 5.4926 -1.0589 0.2543 17 6 6.2567 -0.9340 -0.8909 18 6 5.6419 -0.7541 -2.1158 19 6 4.2630 -0.6996 -2.1957 20 6 1.4346 -2.1643 -1.1044 21 6 1.0509 -2.7829 -2.2796 22 6 0.5369 -4.0656 -2.2497 23 6 0.4061 -4.7302 -1.0433 24 17 -0.2400 -6.3411 -1.0049 25 6 0.7903 -4.1105 0.1324 26 6 1.3041 -2.8278 0.1013 27 1 -0.3633 -1.0252 0.0708 28 1 -0.3634 0.5739 0.8524 29 1 -0.3634 0.4513 -0.9233 30 1 3.0797 1.3445 -0.1083 31 1 1.5611 1.9275 -0.8309 32 1 2.9887 4.9171 0.7782 33 1 3.5169 -1.0941 1.0701 34 1 5.9730 -1.1998 1.2113 35 1 7.3340 -0.9774 -0.8286 36 1 6.2389 -0.6569 -3.0106 37 1 3.7826 -0.5586 -3.1527 38 1 1.1568 -2.2655 -3.2216 39 1 0.2375 -4.5489 -3.1679 40 1 0.6880 -4.6286 1.0745 41 1 1.6038 -2.3437 1.0191 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580970292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:06 Heat of formation + Delta-G solvation = 49.785492 kcal Electronic energy + Delta-G solvation = -23652.756237 eV Core-core repulsion = 20330.182926 eV Total energy + Delta-G solvation = -3322.573310 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.99720 -38.53261 -36.77794 -36.05711 -32.91722 -31.57488 -30.98635 -30.42820 -30.12546 -27.17828 -26.19001 -24.01013 -22.92849 -21.98851 -21.78277 -21.23707 -19.50612 -17.11373 -16.57389 -16.32750 -15.68611 -15.13963 -15.01697 -14.55922 -14.50585 -13.98270 -13.72053 -13.63443 -13.37436 -13.23492 -12.94232 -12.57841 -12.41423 -12.03673 -11.94160 -11.61323 -11.47514 -11.26074 -11.24737 -10.91623 -10.79862 -10.69014 -10.59957 -10.54860 -10.39756 -9.88291 -9.26048 -8.94430 -8.54458 -8.48548 -8.43949 -8.15119 -7.38325 -6.03453 -4.04947 1.18822 1.38479 1.79167 1.87352 2.12750 3.31825 3.36469 3.38643 3.71021 4.21347 4.38728 4.65616 4.90391 4.95291 5.08377 5.24702 5.31643 5.34455 5.37919 5.46677 5.53236 5.53947 5.75971 5.82400 5.92555 6.01082 6.07421 6.13902 6.26056 6.28857 6.32615 6.38526 6.49539 6.67090 6.74284 6.83770 6.89263 6.95257 7.06625 7.29427 7.31937 7.44046 7.75819 8.04295 8.13427 8.48435 9.01727 9.58870 11.07250 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.012553 B = 0.004259 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.074304 B = 6573.307987 C = 7969.120831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.528 5.528 3 C 0.193 3.807 4 C -0.508 4.508 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.156 3.844 13 H 0.048 0.952 14 C -0.061 4.061 15 C -0.074 4.074 16 C -0.126 4.126 17 C -0.126 4.126 18 C -0.127 4.127 19 C -0.116 4.116 20 C -0.054 4.054 21 C -0.106 4.106 22 C -0.114 4.114 23 C -0.040 4.040 24 Cl -0.085 7.085 25 C -0.116 4.116 26 C -0.075 4.075 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.011 0.989 30 H 0.039 0.961 31 H -0.011 1.011 32 H 0.261 0.739 33 H 0.132 0.868 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.044 -15.700 -5.393 16.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.253 5.253 3 C 0.068 3.932 4 C -0.546 4.546 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.048 3.952 13 H 0.066 0.934 14 C -0.061 4.061 15 C -0.092 4.092 16 C -0.144 4.144 17 C -0.144 4.144 18 C -0.145 4.145 19 C -0.134 4.134 20 C -0.054 4.054 21 C -0.125 4.125 22 C -0.133 4.133 23 C -0.067 4.067 24 Cl -0.056 7.056 25 C -0.134 4.134 26 C -0.093 4.093 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.030 0.970 30 H 0.057 0.943 31 H 0.006 0.994 32 H 0.071 0.929 33 H 0.150 0.850 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.134 -15.870 -4.991 16.637 hybrid contribution -0.505 0.983 0.011 1.105 sum -0.371 -14.887 -4.980 15.702 Atomic orbital electron populations 1.22274 0.88438 0.99942 1.00788 1.62241 1.07043 1.18129 1.37852 1.19780 0.96090 0.80779 0.96542 1.21071 1.34977 0.96937 1.01639 0.91943 1.24955 0.95280 0.97347 0.96814 1.69949 1.38080 1.11477 1.34032 0.86605 0.78667 0.78428 0.83952 1.20181 1.21411 1.20332 1.19437 0.90716 0.90264 0.94822 0.93415 1.19551 0.93825 0.99183 0.93557 1.21065 0.94077 0.96292 0.97810 1.21131 0.94209 1.00985 0.98079 1.21037 0.99285 1.01067 0.92983 1.20941 0.94455 1.01650 0.97500 1.20926 0.93914 1.00871 0.97733 1.19958 0.96604 0.95779 0.93105 1.20985 0.98888 0.94328 0.98254 1.20900 1.00984 0.94960 0.96472 1.20888 1.03378 0.86908 0.95518 1.98347 1.85237 1.23084 1.98931 1.21078 0.99966 0.95512 0.96884 1.21141 0.96549 0.92606 0.99036 0.93243 0.90391 0.97004 0.94267 0.99360 0.92902 0.84996 0.86502 0.86830 0.86722 0.86811 0.85480 0.85396 0.85226 0.83833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 8.95 60.07 0.54 1.17 16 2 N -0.53 -10.46 3.26 -239.13 -0.78 -11.24 16 3 C 0.19 4.79 4.41 -4.97 -0.02 4.76 16 4 C -0.51 -13.68 8.46 -34.44 -0.29 -13.97 16 5 H 0.06 1.65 7.12 -52.49 -0.37 1.28 16 6 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 7 N -0.90 -26.23 13.29 55.43 0.74 -25.50 16 8 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.16 2.66 1.88 -70.02 -0.13 2.53 16 13 H 0.05 0.84 7.87 -51.93 -0.41 0.43 16 14 C -0.06 -1.04 3.62 -104.63 -0.38 -1.42 16 15 C -0.07 -1.29 8.31 -39.58 -0.33 -1.62 16 16 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 17 C -0.13 -1.83 10.05 -39.59 -0.40 -2.23 16 18 C -0.13 -1.86 10.05 -39.59 -0.40 -2.25 16 19 C -0.12 -1.83 9.67 -39.58 -0.38 -2.21 16 20 C -0.05 -0.78 3.76 -104.62 -0.39 -1.18 16 21 C -0.11 -1.35 9.67 -39.59 -0.38 -1.73 16 22 C -0.11 -1.35 9.83 -39.55 -0.39 -1.74 16 23 C -0.04 -0.50 6.32 -39.50 -0.25 -0.75 16 24 Cl -0.08 -0.94 28.96 -51.86 -1.50 -2.44 16 25 C -0.12 -1.45 9.83 -39.55 -0.39 -1.84 16 26 C -0.07 -1.05 7.87 -39.59 -0.31 -1.36 16 27 H 0.05 0.81 6.11 -51.93 -0.32 0.49 16 28 H 0.08 1.55 6.76 -51.93 -0.35 1.20 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.04 1.06 6.27 -51.93 -0.33 0.73 16 31 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.13 2.36 7.28 -52.49 -0.38 1.97 16 34 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.11 1.36 8.06 -52.48 -0.42 0.93 16 36 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 37 H 0.11 1.58 8.04 -52.49 -0.42 1.16 16 38 H 0.13 1.42 8.04 -52.48 -0.42 0.99 16 39 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 41 H 0.14 2.11 7.28 -52.48 -0.38 1.73 16 LS Contribution 354.17 15.07 5.34 5.34 Total: -1.00 -28.94 354.17 -11.11 -40.05 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.48 Total: 2.28 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -4.40 Total: -24.72 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.04 Total: -36.74 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.50 Total: -2.44 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.94 -11.11 -40.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580970292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.831 kcal (2) G-P(sol) polarization free energy of solvation -28.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds