Wall clock time and date at job start Tue Mar 31 2020 11:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 110.99741 * 2 1 4 4 C 1.50708 * 109.47200 * 66.04769 * 3 2 1 5 5 H 1.08002 * 119.99527 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99951 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00378 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99519 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47605 * 60.00009 * 8 6 4 10 10 H 1.48510 * 109.47169 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47161 * 299.99633 * 8 6 4 12 12 C 1.46901 * 111.00142 * 236.05256 * 2 1 3 13 13 H 1.09003 * 109.47466 * 63.94771 * 12 2 1 14 14 C 1.50693 * 109.47211 * 183.95475 * 12 2 1 15 15 C 1.38230 * 120.00178 * 39.71798 * 14 12 2 16 16 C 1.38241 * 120.00029 * 179.78686 * 15 14 12 17 17 C 1.38229 * 119.99660 * 0.45080 * 16 15 14 18 18 C 1.38234 * 120.00347 * 359.80630 * 17 16 15 19 19 C 1.38230 * 120.00202 * 359.97438 * 18 17 16 20 20 C 1.50707 * 109.46758 * 303.95368 * 12 2 1 21 21 C 1.38241 * 119.98819 * 140.00304 * 20 12 2 22 22 C 1.38215 * 120.01083 * 179.97438 * 21 20 12 23 23 C 1.38349 * 119.98995 * 0.02562 * 22 21 20 24 24 Cl 1.73599 * 120.01575 * 179.97438 * 23 22 21 25 25 C 1.38354 * 119.96925 * 359.97438 * 23 22 21 26 26 C 1.38207 * 119.99100 * 0.02562 * 25 23 22 27 27 H 1.08995 * 109.47041 * 183.95232 * 1 2 3 28 28 H 1.08997 * 109.47299 * 303.95243 * 1 2 3 29 29 H 1.09005 * 109.47317 * 63.95052 * 1 2 3 30 30 H 1.09000 * 109.47486 * 186.04828 * 3 2 1 31 31 H 1.09002 * 109.47822 * 306.04719 * 3 2 1 32 32 H 0.96993 * 120.00030 * 180.02562 * 7 6 4 33 33 H 1.08001 * 120.00005 * 0.02562 * 15 14 12 34 34 H 1.07999 * 120.00106 * 180.27640 * 16 15 14 35 35 H 1.08004 * 119.99801 * 179.83073 * 17 16 15 36 36 H 1.08010 * 120.00245 * 180.02562 * 18 17 16 37 37 H 1.07997 * 120.00471 * 179.97438 * 19 18 17 38 38 H 1.08004 * 119.98956 * 0.24964 * 21 20 12 39 39 H 1.07996 * 120.00054 * 180.02562 * 22 21 20 40 40 H 1.08008 * 120.00263 * 179.97438 * 25 23 22 41 41 H 1.08003 * 119.99806 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2985 5 1 1.0739 1.5114 2.0485 6 6 2.0276 3.3492 1.5289 7 7 2.7136 4.0013 0.6159 8 14 1.5838 4.1863 3.1388 9 1 2.1755 3.4286 4.2705 10 1 2.1158 5.5729 3.1388 11 1 0.1065 4.2236 3.2865 12 6 1.9955 -0.7658 -1.1377 13 1 1.7044 -0.2798 -2.0689 14 6 3.4988 -0.8254 -1.0506 15 6 4.1137 -0.9999 0.1750 16 6 5.4926 -1.0589 0.2543 17 6 6.2567 -0.9340 -0.8909 18 6 5.6419 -0.7541 -2.1158 19 6 4.2630 -0.6996 -2.1957 20 6 1.4346 -2.1643 -1.1044 21 6 1.0509 -2.7829 -2.2796 22 6 0.5369 -4.0656 -2.2497 23 6 0.4061 -4.7302 -1.0433 24 17 -0.2400 -6.3411 -1.0049 25 6 0.7903 -4.1105 0.1324 26 6 1.3041 -2.8278 0.1013 27 1 -0.3633 -1.0252 0.0708 28 1 -0.3634 0.5739 0.8524 29 1 -0.3634 0.4513 -0.9233 30 1 3.0797 1.3445 -0.1083 31 1 1.5611 1.9275 -0.8309 32 1 2.9887 4.9171 0.7782 33 1 3.5169 -1.0941 1.0701 34 1 5.9730 -1.1998 1.2113 35 1 7.3340 -0.9774 -0.8286 36 1 6.2389 -0.6569 -3.0106 37 1 3.7826 -0.5586 -3.1527 38 1 1.1568 -2.2655 -3.2216 39 1 0.2375 -4.5489 -3.1679 40 1 0.6880 -4.6286 1.0745 41 1 1.6038 -2.3437 1.0191 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580970292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:06 Heat of formation + Delta-G solvation = 37.145042 kcal Electronic energy + Delta-G solvation = -23653.304368 eV Core-core repulsion = 20330.182926 eV Total energy + Delta-G solvation = -3323.121442 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.19942 -39.64722 -38.04231 -37.22310 -34.83763 -33.05162 -32.02921 -31.61835 -31.28603 -29.07829 -27.57487 -25.70408 -24.04921 -23.14834 -22.94203 -22.82351 -20.86786 -18.60145 -18.01218 -17.69084 -17.00127 -16.56037 -16.34316 -16.12975 -15.73647 -15.18161 -15.12610 -15.09933 -14.43572 -14.33397 -14.21951 -14.07280 -13.71983 -13.67974 -13.31124 -13.10962 -12.82664 -12.76293 -12.56327 -12.37127 -12.29530 -12.21053 -11.97738 -11.79616 -11.72167 -11.55273 -11.27390 -10.58103 -9.94455 -9.69164 -9.64059 -9.34979 -9.06724 -8.16843 -6.25774 0.13845 0.38443 0.58260 0.64792 1.17465 1.41861 1.44134 1.51704 2.41207 2.67051 2.98623 3.15615 3.21965 3.84392 3.90724 3.98597 4.01726 4.13607 4.26400 4.36626 4.38162 4.45591 4.52948 4.61080 4.70484 4.75018 4.78126 4.85409 5.06354 5.09575 5.15755 5.19785 5.26318 5.28449 5.31124 5.38262 5.61187 5.64572 5.68745 5.72367 5.83996 5.86156 6.09909 6.23188 6.32950 6.62167 6.89977 7.43171 8.93941 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.012553 B = 0.004259 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.074304 B = 6573.307987 C = 7969.120831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.526 5.526 3 C 0.215 3.785 4 C -0.519 4.519 5 H 0.064 0.936 6 C 0.005 3.995 7 N -0.933 5.933 8 Si 0.963 3.037 9 H -0.268 1.268 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.161 3.839 13 H 0.040 0.960 14 C -0.079 4.079 15 C -0.097 4.097 16 C -0.137 4.137 17 C -0.128 4.128 18 C -0.128 4.128 19 C -0.130 4.130 20 C -0.066 4.066 21 C -0.106 4.106 22 C -0.109 4.109 23 C -0.043 4.043 24 Cl -0.071 7.071 25 C -0.115 4.115 26 C -0.084 4.084 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.008 0.992 30 H 0.015 0.985 31 H -0.047 1.047 32 H 0.262 0.738 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.128 0.872 38 H 0.142 0.858 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.047 -17.217 -5.592 18.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.250 5.250 3 C 0.089 3.911 4 C -0.557 4.557 5 H 0.082 0.918 6 C -0.193 4.193 7 N -0.574 5.574 8 Si 0.788 3.212 9 H -0.193 1.193 10 H -0.212 1.212 11 H -0.194 1.194 12 C 0.052 3.948 13 H 0.058 0.942 14 C -0.079 4.079 15 C -0.115 4.115 16 C -0.155 4.155 17 C -0.146 4.146 18 C -0.146 4.146 19 C -0.149 4.149 20 C -0.067 4.067 21 C -0.125 4.125 22 C -0.127 4.127 23 C -0.070 4.070 24 Cl -0.042 7.042 25 C -0.133 4.133 26 C -0.103 4.103 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.026 0.974 30 H 0.033 0.967 31 H -0.030 1.030 32 H 0.071 0.929 33 H 0.134 0.866 34 H 0.151 0.849 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.146 0.854 38 H 0.160 0.840 39 H 0.170 0.830 40 H 0.163 0.837 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.118 -17.417 -5.187 18.173 hybrid contribution -0.491 1.345 0.015 1.432 sum -0.374 -16.071 -5.173 16.887 Atomic orbital electron populations 1.22224 0.87611 1.01169 0.99792 1.62102 1.07709 1.15283 1.39865 1.19327 0.94391 0.82975 0.94441 1.21413 1.34591 0.97364 1.02336 0.91792 1.25819 0.95121 0.98106 1.00257 1.70085 1.39361 1.11791 1.36120 0.85540 0.78760 0.77211 0.79729 1.19347 1.21177 1.19360 1.19406 0.91116 0.91274 0.92969 0.94242 1.19685 0.93977 1.00093 0.94183 1.21062 0.95005 0.98006 0.97434 1.21411 0.93725 1.00802 0.99558 1.21424 1.00826 0.99880 0.92449 1.21346 0.94201 1.00266 0.98785 1.21210 0.94801 1.00966 0.97909 1.19770 0.98074 0.94589 0.94248 1.21140 0.98390 0.94808 0.98120 1.21150 0.99864 0.94382 0.97323 1.21022 1.02881 0.87514 0.95545 1.98356 1.84965 1.22017 1.98913 1.21194 0.99365 0.94867 0.97897 1.21035 0.97483 0.93414 0.98362 0.90686 0.92024 0.97391 0.96691 1.02966 0.92906 0.86604 0.84941 0.83826 0.83740 0.85413 0.84001 0.82987 0.83746 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.52 8.95 127.69 1.14 2.67 16 2 N -0.53 -21.65 3.26 -910.47 -2.97 -24.62 16 3 C 0.21 11.18 4.41 85.56 0.38 11.55 16 4 C -0.52 -28.76 8.46 25.60 0.22 -28.54 16 5 H 0.06 3.45 7.12 -2.91 -0.02 3.43 16 6 C 0.01 0.28 5.46 84.65 0.46 0.75 16 7 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 8 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 10 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 12 C 0.16 5.64 1.88 43.42 0.08 5.72 16 13 H 0.04 1.43 7.87 -2.39 -0.02 1.41 16 14 C -0.08 -2.79 3.62 -19.87 -0.07 -2.86 16 15 C -0.10 -3.48 8.31 22.27 0.18 -3.29 16 16 C -0.14 -4.30 10.05 22.27 0.22 -4.07 16 17 C -0.13 -3.54 10.05 22.27 0.22 -3.32 16 18 C -0.13 -3.55 10.05 22.27 0.22 -3.33 16 19 C -0.13 -4.09 9.67 22.27 0.22 -3.88 16 20 C -0.07 -1.92 3.76 -19.86 -0.07 -1.99 16 21 C -0.11 -2.55 9.67 22.26 0.22 -2.33 16 22 C -0.11 -2.31 9.83 22.29 0.22 -2.09 16 23 C -0.04 -0.96 6.32 22.32 0.14 -0.82 16 24 Cl -0.07 -1.42 28.96 -2.72 -0.08 -1.50 16 25 C -0.11 -2.73 9.83 22.29 0.22 -2.51 16 26 C -0.08 -2.36 7.87 22.26 0.18 -2.18 16 27 H 0.07 2.44 6.11 -2.39 -0.01 2.43 16 28 H 0.06 2.51 6.76 -2.39 -0.02 2.49 16 29 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 30 H 0.02 0.85 6.27 -2.39 -0.01 0.84 16 31 H -0.05 -2.75 8.12 -2.39 -0.02 -2.77 16 32 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 33 H 0.12 4.40 7.28 -2.91 -0.02 4.38 16 34 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 35 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 36 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 37 H 0.13 3.50 8.04 -2.91 -0.02 3.48 16 38 H 0.14 2.93 8.04 -2.91 -0.02 2.90 16 39 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 41 H 0.13 3.94 7.28 -2.91 -0.02 3.92 16 Total: -1.00 -63.36 354.17 4.46 -58.90 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 1.02 Total: 17.45 kcal Atomic # 6 Polarization: -44.70 SS G_CDS: 4.17 Total: -40.53 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -2.68 Total: -80.36 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.50 kcal Total: -63.36 4.46 -58.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580970292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.042 kcal (2) G-P(sol) polarization free energy of solvation -63.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds