Wall clock time and date at job start Tue Mar 31 2020 11:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 C 1.50705 * 109.47260 * 239.99668 * 2 1 3 5 5 H 1.07991 * 119.99976 * 240.00314 * 4 2 1 6 6 C 1.37885 * 119.99592 * 60.00206 * 4 2 1 7 7 N 1.31512 * 119.99797 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99577 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47084 * 90.00586 * 8 6 4 10 10 H 1.48501 * 109.46906 * 209.99925 * 8 6 4 11 11 H 1.48496 * 109.47712 * 330.00110 * 8 6 4 12 12 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 13 13 C 1.34784 * 119.99893 * 274.99901 * 12 2 1 14 14 O 1.21283 * 119.99649 * 0.02562 * 13 12 2 15 15 C 1.50697 * 119.99774 * 179.72962 * 13 12 2 16 16 C 1.53003 * 109.46624 * 180.02562 * 15 13 12 17 17 C 1.50702 * 109.46956 * 179.97438 * 16 15 13 18 18 C 1.38255 * 119.99706 * 264.99769 * 17 16 15 19 19 C 1.38216 * 119.99922 * 180.02562 * 18 17 16 20 20 C 1.38252 * 120.00076 * 359.97312 * 19 18 17 21 21 C 1.38219 * 119.99985 * 359.97438 * 20 19 18 22 22 C 1.38216 * 120.00388 * 84.72295 * 17 16 15 23 23 C 1.50701 * 119.99615 * 359.97438 * 22 17 16 24 24 F 1.39905 * 109.46893 * 179.97438 * 23 22 17 25 25 F 1.39900 * 109.47587 * 299.99946 * 23 22 17 26 26 F 1.39904 * 109.47121 * 60.00316 * 23 22 17 27 27 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 29 29 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 30 30 H 0.97008 * 119.99478 * 179.97438 * 7 6 4 31 31 H 0.97005 * 120.00261 * 95.00113 * 12 2 1 32 32 H 1.09001 * 109.46809 * 299.99238 * 15 13 12 33 33 H 1.08993 * 109.47525 * 59.99679 * 15 13 12 34 34 H 1.09001 * 109.46782 * 299.99104 * 16 15 13 35 35 H 1.08993 * 109.47555 * 59.99547 * 16 15 13 36 36 H 1.08002 * 120.00228 * 359.97438 * 18 17 16 37 37 H 1.08001 * 120.00113 * 179.97438 * 19 18 17 38 38 H 1.08003 * 120.00034 * 179.97438 * 20 19 18 39 39 H 1.08005 * 119.99618 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3448 -2.1616 -4.4124 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7119 12 7 2.0182 -0.6907 1.1962 13 6 2.1469 -0.0183 2.3572 14 8 1.8581 1.1584 2.4117 15 6 2.6434 -0.7302 3.5891 16 6 2.6955 0.2531 4.7602 17 6 3.1914 -0.4589 5.9923 18 6 2.2881 -0.9803 6.8999 19 6 2.7429 -1.6329 8.0303 20 6 4.1009 -1.7648 8.2530 21 6 5.0039 -1.2445 7.3451 22 6 4.5490 -0.5957 6.2122 23 6 5.5335 -0.0333 5.2194 24 9 6.8368 -0.2937 5.6565 25 9 5.3312 -0.6323 3.9715 26 9 5.3466 1.3488 5.1091 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 0.7088 1.1612 -3.4845 31 1 2.2490 -1.6319 1.1526 32 1 1.9668 -1.5493 3.8328 33 1 3.6414 -1.1266 3.4024 34 1 3.3719 1.0725 4.5167 35 1 1.6973 0.6491 4.9468 36 1 1.2272 -0.8770 6.7261 37 1 2.0373 -2.0399 8.7395 38 1 4.4563 -2.2744 9.1365 39 1 6.0649 -1.3472 7.5194 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601022006.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:22 Heat of formation + Delta-G solvation = -173.952645 kcal Electronic energy + Delta-G solvation = -26427.670509 eV Core-core repulsion = 22112.829280 eV Total energy + Delta-G solvation = -4314.841229 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.29381 -47.81856 -47.69982 -39.91839 -38.74923 -34.94146 -34.00357 -32.33978 -32.15791 -30.27841 -28.61861 -26.20852 -25.24555 -24.63928 -22.56374 -21.63142 -20.62082 -19.32586 -18.60239 -18.53762 -18.43339 -17.13700 -16.23909 -15.81901 -15.54138 -15.21472 -15.02873 -14.87183 -14.61342 -14.36053 -14.23331 -14.05862 -13.84410 -13.84260 -13.47239 -13.31515 -12.90631 -12.73894 -12.54662 -12.35569 -11.86666 -11.69404 -11.48723 -11.29711 -11.05584 -10.93143 -10.79722 -10.63397 -10.29792 -10.21123 -9.52577 -9.23508 -9.01618 -8.87169 -8.52445 -7.85781 -6.09786 -4.18823 0.64152 0.94182 2.55028 3.18075 3.25949 3.32769 3.35370 3.45927 3.60828 3.90769 4.09239 4.31582 4.37111 4.50397 4.59228 4.65902 4.93997 5.06332 5.14713 5.22254 5.26047 5.32681 5.52720 5.67618 5.80215 5.89233 5.91340 6.04352 6.21739 6.24654 6.47243 6.85214 6.99063 7.18322 7.50880 7.59976 7.72746 7.95113 8.18143 8.71854 8.81551 9.18553 9.48891 10.96224 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.020650 B = 0.003191 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.593571 B = 8772.721612 C = 9381.751799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.710 5.710 13 C 0.502 3.498 14 O -0.557 6.557 15 C -0.153 4.153 16 C -0.087 4.087 17 C -0.022 4.022 18 C -0.119 4.119 19 C -0.085 4.085 20 C -0.131 4.131 21 C -0.071 4.071 22 C -0.183 4.183 23 C 0.507 3.493 24 F -0.180 7.180 25 F -0.167 7.167 26 F -0.171 7.171 27 H 0.025 0.975 28 H 0.014 0.986 29 H 0.090 0.910 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.321 -6.728 22.301 24.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.357 5.357 13 C 0.287 3.713 14 O -0.437 6.437 15 C -0.193 4.193 16 C -0.125 4.125 17 C -0.022 4.022 18 C -0.137 4.137 19 C -0.103 4.103 20 C -0.149 4.149 21 C -0.089 4.089 22 C -0.185 4.185 23 C 0.453 3.547 24 F -0.162 7.162 25 F -0.148 7.148 26 F -0.153 7.153 27 H 0.045 0.955 28 H 0.033 0.967 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.221 0.779 32 H 0.106 0.894 33 H 0.123 0.877 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.050 -5.732 22.117 23.635 hybrid contribution 0.566 -0.884 -1.056 1.489 sum 6.616 -6.616 21.061 23.046 Atomic orbital electron populations 1.22072 0.98533 0.99027 1.00855 1.18731 0.90975 0.94023 0.80122 0.93400 1.21239 1.32354 1.13181 0.90379 0.92082 1.24895 0.94852 0.94957 0.99062 1.69909 1.35963 1.22457 1.23823 0.86448 0.79182 0.79261 0.82213 1.20566 1.21075 1.19837 1.46520 1.65074 1.13528 1.10617 1.20349 0.78558 0.87536 0.84834 1.90650 1.51504 1.16188 1.85358 1.22001 1.04632 0.99217 0.93436 1.20666 1.04199 0.97715 0.89886 1.19839 0.91294 0.94823 0.96282 1.21153 1.00042 0.98458 0.94027 1.21403 0.95885 0.96310 0.96745 1.21128 0.93100 1.00936 0.99720 1.21005 1.00910 0.94881 0.92143 1.19895 0.93474 1.07349 0.97758 1.18331 0.79649 0.76206 0.80530 1.93150 1.39781 1.93837 1.89401 1.93132 1.94149 1.83385 1.44151 1.93208 1.94792 1.31033 1.96228 0.95538 0.96694 0.89186 0.92611 0.77949 0.89370 0.87702 0.89110 0.89082 0.84622 0.85105 0.85008 0.84557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 2 C 0.26 6.85 2.56 -69.08 -0.18 6.67 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 4 C -0.53 -14.40 8.73 -34.44 -0.30 -14.70 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.27 11.32 55.43 0.63 -24.64 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.89 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.71 -15.13 5.07 -54.93 -0.28 -15.41 16 13 C 0.50 10.15 7.79 -10.98 -0.09 10.06 16 14 O -0.56 -13.45 15.65 5.56 0.09 -13.36 16 15 C -0.15 -2.24 5.46 -27.88 -0.15 -2.39 16 16 C -0.09 -1.19 3.98 -27.88 -0.11 -1.30 16 17 C -0.02 -0.25 5.10 -104.62 -0.53 -0.78 16 18 C -0.12 -1.07 9.68 -39.58 -0.38 -1.45 16 19 C -0.09 -0.62 10.05 -39.58 -0.40 -1.01 16 20 C -0.13 -0.93 10.05 -39.58 -0.40 -1.33 16 21 C -0.07 -0.62 9.43 -39.58 -0.37 -1.00 16 22 C -0.18 -2.03 5.37 -104.62 -0.56 -2.59 16 23 C 0.51 6.35 2.83 36.01 0.10 6.45 16 24 F -0.18 -2.09 15.97 2.25 0.04 -2.06 16 25 F -0.17 -2.32 13.57 2.25 0.03 -2.29 16 26 F -0.17 -2.39 15.33 2.25 0.03 -2.36 16 27 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.39 7.16 8.54 -40.82 -0.35 6.82 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.11 1.48 4.97 -51.93 -0.26 1.22 16 34 H 0.09 1.41 5.72 -51.93 -0.30 1.11 16 35 H 0.09 1.24 8.00 -51.93 -0.42 0.82 16 36 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 38 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 39 H 0.14 0.98 7.16 -52.48 -0.38 0.61 16 LS Contribution 336.05 15.07 5.06 5.06 Total: -1.00 -31.71 336.05 -7.02 -38.73 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.48 Total: 5.44 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -3.12 Total: -5.02 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.35 Total: -40.05 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 9 Polarization: -6.80 SS G_CDS: 0.10 Total: -6.70 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.71 -7.02 -38.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601022006.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.221 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds