Wall clock time and date at job start Tue Mar 31 2020 11:13:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08990 * 109.47173 * 2 1
4 4 C 1.50705 * 109.47260 * 239.99668 * 2 1 3
5 5 H 1.07991 * 119.99976 * 240.00314 * 4 2 1
6 6 C 1.37885 * 119.99592 * 60.00206 * 4 2 1
7 7 N 1.31512 * 119.99797 * 359.97438 * 6 4 2
8 8 Si 1.86793 * 119.99577 * 179.97438 * 6 4 2
9 9 H 1.48508 * 109.47084 * 90.00586 * 8 6 4
10 10 H 1.48501 * 109.46906 * 209.99925 * 8 6 4
11 11 H 1.48496 * 109.47712 * 330.00110 * 8 6 4
12 12 N 1.46499 * 109.46843 * 120.00201 * 2 1 3
13 13 C 1.34784 * 119.99893 * 274.99901 * 12 2 1
14 14 O 1.21283 * 119.99649 * 0.02562 * 13 12 2
15 15 C 1.50697 * 119.99774 * 179.72962 * 13 12 2
16 16 C 1.53003 * 109.46624 * 180.02562 * 15 13 12
17 17 C 1.50702 * 109.46956 * 179.97438 * 16 15 13
18 18 C 1.38255 * 119.99706 * 264.99769 * 17 16 15
19 19 C 1.38216 * 119.99922 * 180.02562 * 18 17 16
20 20 C 1.38252 * 120.00076 * 359.97312 * 19 18 17
21 21 C 1.38219 * 119.99985 * 359.97438 * 20 19 18
22 22 C 1.38216 * 120.00388 * 84.72295 * 17 16 15
23 23 C 1.50701 * 119.99615 * 359.97438 * 22 17 16
24 24 F 1.39905 * 109.46893 * 179.97438 * 23 22 17
25 25 F 1.39900 * 109.47587 * 299.99946 * 23 22 17
26 26 F 1.39904 * 109.47121 * 60.00316 * 23 22 17
27 27 H 1.09007 * 109.47248 * 179.97438 * 1 2 3
28 28 H 1.08997 * 109.47450 * 300.00199 * 1 2 3
29 29 H 1.08998 * 109.47317 * 60.00174 * 1 2 3
30 30 H 0.97008 * 119.99478 * 179.97438 * 7 6 4
31 31 H 0.97005 * 120.00261 * 95.00113 * 12 2 1
32 32 H 1.09001 * 109.46809 * 299.99238 * 15 13 12
33 33 H 1.08993 * 109.47525 * 59.99679 * 15 13 12
34 34 H 1.09001 * 109.46782 * 299.99104 * 16 15 13
35 35 H 1.08993 * 109.47555 * 59.99547 * 16 15 13
36 36 H 1.08002 * 120.00228 * 359.97438 * 18 17 16
37 37 H 1.08001 * 120.00113 * 179.97438 * 19 18 17
38 38 H 1.08003 * 120.00034 * 179.97438 * 20 19 18
39 39 H 1.08005 * 119.99618 * 179.97438 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0324 -0.7105 -1.2304
5 1 2.6532 -1.5885 -1.1313
6 6 1.6993 -0.2394 -2.4828
7 7 0.9428 0.8296 -2.6034
8 14 2.3225 -1.1196 -4.0079
9 1 1.3448 -2.1616 -4.4124
10 1 2.4873 -0.1403 -5.1120
11 1 3.6308 -1.7567 -3.7119
12 7 2.0182 -0.6907 1.1962
13 6 2.1469 -0.0183 2.3572
14 8 1.8581 1.1584 2.4117
15 6 2.6434 -0.7302 3.5891
16 6 2.6955 0.2531 4.7602
17 6 3.1914 -0.4589 5.9923
18 6 2.2881 -0.9803 6.8999
19 6 2.7429 -1.6329 8.0303
20 6 4.1009 -1.7648 8.2530
21 6 5.0039 -1.2445 7.3451
22 6 4.5490 -0.5957 6.2122
23 6 5.5335 -0.0333 5.2194
24 9 6.8368 -0.2937 5.6565
25 9 5.3312 -0.6323 3.9715
26 9 5.3466 1.3488 5.1091
27 1 -0.3634 -1.0277 -0.0005
28 1 -0.3634 0.5138 0.8899
29 1 -0.3634 0.5138 -0.8900
30 1 0.7088 1.1612 -3.4845
31 1 2.2490 -1.6319 1.1526
32 1 1.9668 -1.5493 3.8328
33 1 3.6414 -1.1266 3.4024
34 1 3.3719 1.0725 4.5167
35 1 1.6973 0.6491 4.9468
36 1 1.2272 -0.8770 6.7261
37 1 2.0373 -2.0399 8.7395
38 1 4.4563 -2.2744 9.1365
39 1 6.0649 -1.3472 7.5194
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601022006.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:13:22
Heat of formation + Delta-G solvation = -173.952645 kcal
Electronic energy + Delta-G solvation = -26427.670509 eV
Core-core repulsion = 22112.829280 eV
Total energy + Delta-G solvation = -4314.841229 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.119 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-50.29381 -47.81856 -47.69982 -39.91839 -38.74923 -34.94146 -34.00357 -32.33978
-32.15791 -30.27841 -28.61861 -26.20852 -25.24555 -24.63928 -22.56374 -21.63142
-20.62082 -19.32586 -18.60239 -18.53762 -18.43339 -17.13700 -16.23909 -15.81901
-15.54138 -15.21472 -15.02873 -14.87183 -14.61342 -14.36053 -14.23331 -14.05862
-13.84410 -13.84260 -13.47239 -13.31515 -12.90631 -12.73894 -12.54662 -12.35569
-11.86666 -11.69404 -11.48723 -11.29711 -11.05584 -10.93143 -10.79722 -10.63397
-10.29792 -10.21123 -9.52577 -9.23508 -9.01618 -8.87169 -8.52445 -7.85781
-6.09786 -4.18823 0.64152 0.94182 2.55028 3.18075 3.25949 3.32769
3.35370 3.45927 3.60828 3.90769 4.09239 4.31582 4.37111 4.50397
4.59228 4.65902 4.93997 5.06332 5.14713 5.22254 5.26047 5.32681
5.52720 5.67618 5.80215 5.89233 5.91340 6.04352 6.21739 6.24654
6.47243 6.85214 6.99063 7.18322 7.50880 7.59976 7.72746 7.95113
8.18143 8.71854 8.81551 9.18553 9.48891 10.96224
Molecular weight = 315.12amu
Principal moments of inertia in cm(-1)
A = 0.020650 B = 0.003191 C = 0.002984
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1355.593571 B = 8772.721612 C = 9381.751799
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.263 3.737
3 H 0.048 0.952
4 C -0.533 4.533
5 H 0.061 0.939
6 C 0.065 3.935
7 N -0.884 5.884
8 Si 0.901 3.099
9 H -0.280 1.280
10 H -0.285 1.285
11 H -0.274 1.274
12 N -0.710 5.710
13 C 0.502 3.498
14 O -0.557 6.557
15 C -0.153 4.153
16 C -0.087 4.087
17 C -0.022 4.022
18 C -0.119 4.119
19 C -0.085 4.085
20 C -0.131 4.131
21 C -0.071 4.071
22 C -0.183 4.183
23 C 0.507 3.493
24 F -0.180 7.180
25 F -0.167 7.167
26 F -0.171 7.171
27 H 0.025 0.975
28 H 0.014 0.986
29 H 0.090 0.910
30 H 0.264 0.736
31 H 0.388 0.612
32 H 0.088 0.912
33 H 0.105 0.895
34 H 0.091 0.909
35 H 0.091 0.909
36 H 0.136 0.864
37 H 0.131 0.869
38 H 0.132 0.868
39 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.321 -6.728 22.301 24.136
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.161 3.839
3 H 0.066 0.934
4 C -0.572 4.572
5 H 0.079 0.921
6 C -0.138 4.138
7 N -0.522 5.522
8 Si 0.729 3.271
9 H -0.206 1.206
10 H -0.211 1.211
11 H -0.198 1.198
12 N -0.357 5.357
13 C 0.287 3.713
14 O -0.437 6.437
15 C -0.193 4.193
16 C -0.125 4.125
17 C -0.022 4.022
18 C -0.137 4.137
19 C -0.103 4.103
20 C -0.149 4.149
21 C -0.089 4.089
22 C -0.185 4.185
23 C 0.453 3.547
24 F -0.162 7.162
25 F -0.148 7.148
26 F -0.153 7.153
27 H 0.045 0.955
28 H 0.033 0.967
29 H 0.108 0.892
30 H 0.074 0.926
31 H 0.221 0.779
32 H 0.106 0.894
33 H 0.123 0.877
34 H 0.109 0.891
35 H 0.109 0.891
36 H 0.154 0.846
37 H 0.149 0.851
38 H 0.150 0.850
39 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges 6.050 -5.732 22.117 23.635
hybrid contribution 0.566 -0.884 -1.056 1.489
sum 6.616 -6.616 21.061 23.046
Atomic orbital electron populations
1.22072 0.98533 0.99027 1.00855 1.18731 0.90975 0.94023 0.80122
0.93400 1.21239 1.32354 1.13181 0.90379 0.92082 1.24895 0.94852
0.94957 0.99062 1.69909 1.35963 1.22457 1.23823 0.86448 0.79182
0.79261 0.82213 1.20566 1.21075 1.19837 1.46520 1.65074 1.13528
1.10617 1.20349 0.78558 0.87536 0.84834 1.90650 1.51504 1.16188
1.85358 1.22001 1.04632 0.99217 0.93436 1.20666 1.04199 0.97715
0.89886 1.19839 0.91294 0.94823 0.96282 1.21153 1.00042 0.98458
0.94027 1.21403 0.95885 0.96310 0.96745 1.21128 0.93100 1.00936
0.99720 1.21005 1.00910 0.94881 0.92143 1.19895 0.93474 1.07349
0.97758 1.18331 0.79649 0.76206 0.80530 1.93150 1.39781 1.93837
1.89401 1.93132 1.94149 1.83385 1.44151 1.93208 1.94792 1.31033
1.96228 0.95538 0.96694 0.89186 0.92611 0.77949 0.89370 0.87702
0.89110 0.89082 0.84622 0.85105 0.85008 0.84557
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16
2 C 0.26 6.85 2.56 -69.08 -0.18 6.67 16
3 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16
4 C -0.53 -14.40 8.73 -34.44 -0.30 -14.70 16
5 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16
6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16
7 N -0.88 -25.27 11.32 55.43 0.63 -24.64 16
8 Si 0.90 20.92 29.54 -169.99 -5.02 15.89 16
9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16
11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16
12 N -0.71 -15.13 5.07 -54.93 -0.28 -15.41 16
13 C 0.50 10.15 7.79 -10.98 -0.09 10.06 16
14 O -0.56 -13.45 15.65 5.56 0.09 -13.36 16
15 C -0.15 -2.24 5.46 -27.88 -0.15 -2.39 16
16 C -0.09 -1.19 3.98 -27.88 -0.11 -1.30 16
17 C -0.02 -0.25 5.10 -104.62 -0.53 -0.78 16
18 C -0.12 -1.07 9.68 -39.58 -0.38 -1.45 16
19 C -0.09 -0.62 10.05 -39.58 -0.40 -1.01 16
20 C -0.13 -0.93 10.05 -39.58 -0.40 -1.33 16
21 C -0.07 -0.62 9.43 -39.58 -0.37 -1.00 16
22 C -0.18 -2.03 5.37 -104.62 -0.56 -2.59 16
23 C 0.51 6.35 2.83 36.01 0.10 6.45 16
24 F -0.18 -2.09 15.97 2.25 0.04 -2.06 16
25 F -0.17 -2.32 13.57 2.25 0.03 -2.29 16
26 F -0.17 -2.39 15.33 2.25 0.03 -2.36 16
27 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16
28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16
29 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16
30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16
31 H 0.39 7.16 8.54 -40.82 -0.35 6.82 16
32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16
33 H 0.11 1.48 4.97 -51.93 -0.26 1.22 16
34 H 0.09 1.41 5.72 -51.93 -0.30 1.11 16
35 H 0.09 1.24 8.00 -51.93 -0.42 0.82 16
36 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16
37 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16
38 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16
39 H 0.14 0.98 7.16 -52.48 -0.38 0.61 16
LS Contribution 336.05 15.07 5.06 5.06
Total: -1.00 -31.71 336.05 -7.02 -38.73
By element:
Atomic # 1 Polarization: 9.92 SS G_CDS: -4.48 Total: 5.44 kcal
Atomic # 6 Polarization: -1.90 SS G_CDS: -3.12 Total: -5.02 kcal
Atomic # 7 Polarization: -40.40 SS G_CDS: 0.35 Total: -40.05 kcal
Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.36 kcal
Atomic # 9 Polarization: -6.80 SS G_CDS: 0.10 Total: -6.70 kcal
Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal
Total LS contribution 5.06 Total: 5.06 kcal
Total: -31.71 -7.02 -38.73 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601022006.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -135.221 kcal
(2) G-P(sol) polarization free energy of solvation -31.708 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.929 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal
(6) G-S(sol) free energy of system = (1) + (5) -173.953 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds