Wall clock time and date at job start Tue Mar 31 2020 11:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 C 1.50705 * 109.47260 * 239.99668 * 2 1 3 5 5 H 1.07991 * 119.99976 * 240.00314 * 4 2 1 6 6 C 1.37885 * 119.99592 * 60.00206 * 4 2 1 7 7 N 1.31512 * 119.99797 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99577 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47084 * 90.00586 * 8 6 4 10 10 H 1.48501 * 109.46906 * 209.99925 * 8 6 4 11 11 H 1.48496 * 109.47712 * 330.00110 * 8 6 4 12 12 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 13 13 C 1.34784 * 119.99893 * 274.99901 * 12 2 1 14 14 O 1.21283 * 119.99649 * 0.02562 * 13 12 2 15 15 C 1.50697 * 119.99774 * 179.72962 * 13 12 2 16 16 C 1.53003 * 109.46624 * 180.02562 * 15 13 12 17 17 C 1.50702 * 109.46956 * 179.97438 * 16 15 13 18 18 C 1.38255 * 119.99706 * 264.99769 * 17 16 15 19 19 C 1.38216 * 119.99922 * 180.02562 * 18 17 16 20 20 C 1.38252 * 120.00076 * 359.97312 * 19 18 17 21 21 C 1.38219 * 119.99985 * 359.97438 * 20 19 18 22 22 C 1.38216 * 120.00388 * 84.72295 * 17 16 15 23 23 C 1.50701 * 119.99615 * 359.97438 * 22 17 16 24 24 F 1.39905 * 109.46893 * 179.97438 * 23 22 17 25 25 F 1.39900 * 109.47587 * 299.99946 * 23 22 17 26 26 F 1.39904 * 109.47121 * 60.00316 * 23 22 17 27 27 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 29 29 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 30 30 H 0.97008 * 119.99478 * 179.97438 * 7 6 4 31 31 H 0.97005 * 120.00261 * 95.00113 * 12 2 1 32 32 H 1.09001 * 109.46809 * 299.99238 * 15 13 12 33 33 H 1.08993 * 109.47525 * 59.99679 * 15 13 12 34 34 H 1.09001 * 109.46782 * 299.99104 * 16 15 13 35 35 H 1.08993 * 109.47555 * 59.99547 * 16 15 13 36 36 H 1.08002 * 120.00228 * 359.97438 * 18 17 16 37 37 H 1.08001 * 120.00113 * 179.97438 * 19 18 17 38 38 H 1.08003 * 120.00034 * 179.97438 * 20 19 18 39 39 H 1.08005 * 119.99618 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3448 -2.1616 -4.4124 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7119 12 7 2.0182 -0.6907 1.1962 13 6 2.1469 -0.0183 2.3572 14 8 1.8581 1.1584 2.4117 15 6 2.6434 -0.7302 3.5891 16 6 2.6955 0.2531 4.7602 17 6 3.1914 -0.4589 5.9923 18 6 2.2881 -0.9803 6.8999 19 6 2.7429 -1.6329 8.0303 20 6 4.1009 -1.7648 8.2530 21 6 5.0039 -1.2445 7.3451 22 6 4.5490 -0.5957 6.2122 23 6 5.5335 -0.0333 5.2194 24 9 6.8368 -0.2937 5.6565 25 9 5.3312 -0.6323 3.9715 26 9 5.3466 1.3488 5.1091 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 0.7088 1.1612 -3.4845 31 1 2.2490 -1.6319 1.1526 32 1 1.9668 -1.5493 3.8328 33 1 3.6414 -1.1266 3.4024 34 1 3.3719 1.0725 4.5167 35 1 1.6973 0.6491 4.9468 36 1 1.2272 -0.8770 6.7261 37 1 2.0373 -2.0399 8.7395 38 1 4.4563 -2.2744 9.1365 39 1 6.0649 -1.3472 7.5194 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601022006.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:21 Heat of formation + Delta-G solvation = -192.760170 kcal Electronic energy + Delta-G solvation = -26428.486064 eV Core-core repulsion = 22112.829280 eV Total energy + Delta-G solvation = -4315.656785 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.29035 -48.79671 -48.73985 -40.86632 -40.20779 -36.80515 -35.08885 -34.31136 -32.87598 -31.57780 -30.21220 -27.36549 -27.09652 -25.74568 -23.33679 -23.02194 -21.93801 -21.08376 -19.60645 -19.50266 -19.31077 -18.87523 -17.58448 -17.16342 -16.87987 -16.60082 -16.09434 -16.04393 -15.67016 -15.54047 -15.38635 -15.13788 -15.06147 -14.87288 -14.84813 -14.43364 -14.13633 -13.99317 -13.81895 -13.59363 -13.50355 -13.05496 -12.87955 -12.84665 -12.68977 -12.30577 -12.25478 -12.15391 -12.07678 -11.84166 -11.11234 -10.75549 -10.58450 -10.17230 -9.81183 -9.74280 -8.18579 -6.36321 -0.04291 0.29137 1.43611 1.44882 1.55512 1.63067 1.83972 2.34608 2.50345 2.66841 2.72498 3.00209 3.11556 3.34847 3.62584 3.77812 3.93816 4.06535 4.20164 4.28511 4.42124 4.44864 4.62201 4.71915 4.76206 4.82562 4.91789 4.98434 5.09047 5.11481 5.27670 5.42767 5.43415 5.46181 5.61023 5.68866 5.86660 5.90707 6.09624 6.71810 6.96811 7.31480 7.56672 8.87803 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.020650 B = 0.003191 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.593571 B = 8772.721612 C = 9381.751799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.268 3.732 3 H -0.005 1.005 4 C -0.548 4.548 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.269 1.269 10 H -0.286 1.286 11 H -0.265 1.265 12 N -0.707 5.707 13 C 0.497 3.503 14 O -0.602 6.602 15 C -0.137 4.137 16 C -0.082 4.082 17 C -0.040 4.040 18 C -0.122 4.122 19 C -0.078 4.078 20 C -0.121 4.121 21 C -0.077 4.077 22 C -0.197 4.197 23 C 0.501 3.499 24 F -0.176 7.176 25 F -0.179 7.179 26 F -0.186 7.186 27 H 0.041 0.959 28 H 0.012 0.988 29 H 0.066 0.934 30 H 0.266 0.734 31 H 0.405 0.595 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.148 0.852 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.666 -9.601 24.254 26.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.165 3.835 3 H 0.013 0.987 4 C -0.587 4.587 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.194 1.194 10 H -0.212 1.212 11 H -0.189 1.189 12 N -0.356 5.356 13 C 0.285 3.715 14 O -0.484 6.484 15 C -0.176 4.176 16 C -0.119 4.119 17 C -0.040 4.040 18 C -0.139 4.139 19 C -0.095 4.095 20 C -0.138 4.138 21 C -0.095 4.095 22 C -0.198 4.198 23 C 0.447 3.553 24 F -0.158 7.158 25 F -0.161 7.161 26 F -0.168 7.168 27 H 0.061 0.939 28 H 0.032 0.968 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.240 0.760 32 H 0.139 0.861 33 H 0.131 0.869 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.166 0.834 37 H 0.182 0.818 38 H 0.183 0.817 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.410 -8.643 24.098 26.391 hybrid contribution 0.483 0.043 -1.564 1.637 sum 6.893 -8.600 22.534 25.085 Atomic orbital electron populations 1.21881 0.98130 0.99509 0.99568 1.18344 0.91269 0.91812 0.82101 0.98695 1.21564 1.32629 1.13570 0.90894 0.90933 1.25829 0.94876 0.95587 1.02393 1.70061 1.37021 1.23926 1.24617 0.85320 0.78982 0.78053 0.77833 1.19411 1.21196 1.18913 1.46310 1.65220 1.14241 1.09838 1.21336 0.77225 0.87136 0.85840 1.90626 1.53235 1.18445 1.86131 1.21963 1.05361 0.99592 0.90726 1.20507 1.03400 0.97059 0.90980 1.19614 0.91828 0.96493 0.96106 1.21366 1.00339 0.98144 0.94099 1.21802 0.96651 0.94845 0.96231 1.21562 0.92833 0.99502 0.99918 1.21260 1.02127 0.94508 0.91569 1.19874 0.92893 1.08687 0.98369 1.18678 0.80390 0.75620 0.80617 1.93146 1.39626 1.93732 1.89252 1.93088 1.94255 1.83489 1.45228 1.93176 1.94921 1.32341 1.96316 0.93950 0.96847 0.91542 0.92530 0.76017 0.86082 0.86855 0.91811 0.89561 0.83397 0.81819 0.81703 0.83303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.85 9.26 71.98 0.67 -6.18 16 2 C 0.27 14.39 2.56 44.25 0.11 14.51 16 3 H 0.00 -0.31 7.58 -2.39 -0.02 -0.33 16 4 C -0.55 -29.83 8.73 25.60 0.22 -29.60 16 5 H 0.07 3.69 7.74 -2.92 -0.02 3.66 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -53.71 11.32 21.45 0.24 -53.47 16 8 Si 0.97 42.75 29.54 68.60 2.03 44.77 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 12 N -0.71 -30.47 5.07 -446.10 -2.26 -32.73 16 13 C 0.50 20.51 7.79 87.65 0.68 21.19 16 14 O -0.60 -30.45 15.65 -3.04 -0.05 -30.50 16 15 C -0.14 -3.94 5.46 29.85 0.16 -3.77 16 16 C -0.08 -2.26 3.98 29.85 0.12 -2.14 16 17 C -0.04 -0.85 5.10 -19.86 -0.10 -0.95 16 18 C -0.12 -1.85 9.68 22.27 0.22 -1.63 16 19 C -0.08 -0.79 10.05 22.27 0.22 -0.56 16 20 C -0.12 -1.21 10.05 22.27 0.22 -0.99 16 21 C -0.08 -1.14 9.43 22.27 0.21 -0.93 16 22 C -0.20 -4.13 5.37 -19.87 -0.11 -4.24 16 23 C 0.50 12.64 2.83 71.24 0.20 12.84 16 24 F -0.18 -4.03 15.97 44.97 0.72 -3.31 16 25 F -0.18 -5.04 13.57 44.97 0.61 -4.43 16 26 F -0.19 -5.45 15.33 44.97 0.69 -4.76 16 27 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 28 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 30 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 31 H 0.40 14.63 8.54 -92.70 -0.79 13.84 16 32 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.11 3.13 4.97 -2.39 -0.01 3.12 16 34 H 0.06 2.09 5.72 -2.39 -0.01 2.08 16 35 H 0.09 2.39 8.00 -2.39 -0.02 2.37 16 36 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 38 H 0.17 0.59 8.06 -2.91 -0.02 0.56 16 39 H 0.15 1.77 7.16 -2.91 -0.02 1.75 16 Total: -1.00 -71.82 336.05 5.57 -66.25 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.31 Total: 19.47 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 3.28 Total: -1.30 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -2.02 Total: -86.20 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.05 Total: -30.50 kcal Atomic # 9 Polarization: -14.52 SS G_CDS: 2.02 Total: -12.50 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -71.82 5.57 -66.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601022006.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.513 kcal (2) G-P(sol) polarization free energy of solvation -71.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds