Wall clock time and date at job start Tue Mar 31 2020 11:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46506 * 109.47350 * 2 1 4 4 C 1.46498 * 119.99907 * 274.94793 * 3 2 1 5 5 C 1.52993 * 109.47404 * 269.99717 * 4 3 2 6 6 C 1.52999 * 109.47286 * 180.02562 * 5 4 3 7 7 F 1.39898 * 109.47282 * 60.00384 * 6 5 4 8 8 F 1.39905 * 109.46977 * 179.97438 * 6 5 4 9 9 F 1.39900 * 109.47100 * 300.00245 * 6 5 4 10 10 C 1.34775 * 119.99520 * 94.94678 * 3 2 1 11 11 O 1.21614 * 119.99835 * 185.84924 * 10 3 2 12 12 C 1.47433 * 120.00460 * 5.85625 * 10 3 2 13 13 C 1.39222 * 120.28202 * 55.09110 * 12 10 3 14 14 C 1.38225 * 120.09156 * 180.28328 * 13 12 10 15 15 C 1.38823 * 120.67482 * 359.69758 * 14 13 12 16 16 C 1.37593 * 120.57166 * 359.97438 * 15 14 13 17 17 C 1.40704 * 119.88199 * 0.02701 * 16 15 14 18 18 C 1.40892 * 120.33288 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00440 * 214.97858 * 18 17 16 20 20 C 1.40280 * 119.99835 * 34.97399 * 18 17 16 21 21 N 1.30625 * 119.99951 * 185.75123 * 20 18 17 22 22 Si 1.86803 * 119.99747 * 5.74987 * 20 18 17 23 23 H 1.48497 * 109.47073 * 265.24158 * 22 20 18 24 24 H 1.48503 * 109.47130 * 25.24182 * 22 20 18 25 25 H 1.48496 * 109.46796 * 145.24448 * 22 20 18 26 26 H 1.08994 * 109.47544 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47208 * 300.00071 * 1 2 3 28 28 H 1.09002 * 109.47134 * 59.99616 * 1 2 3 29 29 H 1.09001 * 109.47402 * 240.00425 * 2 1 3 30 30 H 1.09002 * 109.47134 * 120.00384 * 2 1 3 31 31 H 1.08998 * 109.47188 * 30.00520 * 4 3 2 32 32 H 1.09005 * 109.46420 * 149.99893 * 4 3 2 33 33 H 1.09006 * 109.47369 * 300.00759 * 5 4 3 34 34 H 1.09003 * 109.47136 * 60.00101 * 5 4 3 35 35 H 1.08003 * 119.95669 * 0.02562 * 13 12 10 36 36 H 1.07996 * 119.66395 * 179.72007 * 14 13 12 37 37 H 1.07998 * 119.71552 * 180.02562 * 15 14 13 38 38 H 1.07997 * 120.06327 * 180.02562 * 16 15 14 39 39 H 0.97001 * 119.99516 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1594 2.1083 -1.2640 5 6 3.5633 1.8824 -1.8284 6 6 3.7108 2.6423 -3.1482 7 9 3.5127 4.0089 -2.9242 8 9 4.9948 2.4361 -3.6640 9 9 2.7599 2.1770 -4.0629 10 6 2.3379 1.9829 1.1629 11 8 2.6411 3.1606 1.1749 12 6 2.3199 1.2135 2.4204 13 6 3.0644 0.0429 2.5378 14 6 3.0401 -0.6785 3.7166 15 6 2.2825 -0.2457 4.7964 16 6 1.5417 0.9108 4.7128 17 6 1.5491 1.6636 3.5241 18 6 0.7937 2.8490 3.4279 19 1 0.3304 3.1196 2.4906 20 6 0.6432 3.6778 4.5496 21 7 -0.1474 4.7161 4.4932 22 14 1.5733 3.2965 6.1241 23 1 0.7069 2.5012 7.0307 24 1 2.7966 2.5191 5.8005 25 1 1.9560 4.5660 6.7927 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.4185 1.7455 -1.9764 32 1 2.0048 3.1732 -1.0897 33 1 4.3042 2.2452 -1.1159 34 1 3.7179 0.8176 -2.0026 35 1 3.6585 -0.3042 1.7054 36 1 3.6166 -1.5880 3.7987 37 1 2.2751 -0.8212 5.7102 38 1 0.9556 1.2401 5.5579 39 1 -0.2517 5.2889 5.2690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601023679.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:33 Heat of formation + Delta-G solvation = -173.663668 kcal Electronic energy + Delta-G solvation = -26946.452913 eV Core-core repulsion = 22631.624214 eV Total energy + Delta-G solvation = -4314.828698 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.13472 -47.65499 -47.58411 -39.63695 -37.40430 -35.65875 -33.72200 -33.01011 -30.64618 -30.20674 -29.64460 -26.07317 -25.09915 -23.31891 -22.74082 -21.75187 -20.98314 -18.90280 -18.57877 -18.17303 -17.50278 -17.46845 -16.80999 -15.83430 -15.47761 -14.80772 -14.63594 -14.47703 -14.33263 -14.06849 -13.99850 -13.79823 -13.76049 -13.61333 -13.59838 -13.36041 -12.95401 -12.63284 -12.30308 -12.13711 -12.12264 -11.96863 -11.78244 -11.53309 -11.13659 -10.99960 -10.98835 -10.85394 -10.34709 -10.01941 -9.79662 -9.35216 -8.92136 -8.36626 -7.78335 -7.73234 -6.98937 -4.60170 2.14614 2.51397 2.68339 3.04662 3.16044 3.26238 3.35126 3.56407 3.91260 3.92301 4.02498 4.07653 4.43225 4.84550 4.93221 5.19161 5.24071 5.27418 5.39801 5.53754 5.68748 5.73912 5.79069 5.91560 5.93652 6.00689 6.15450 6.25780 6.42441 6.51870 6.70497 6.90185 7.02469 7.14949 7.33921 7.46511 7.63899 7.88820 7.96069 8.25343 8.47056 8.65640 8.98544 10.02284 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.004238 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.695073 B = 6605.949256 C = 7261.657103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.100 3.900 3 N -0.620 5.620 4 C 0.116 3.884 5 C -0.184 4.184 6 C 0.457 3.543 7 F -0.179 7.179 8 F -0.187 7.187 9 F -0.186 7.186 10 C 0.584 3.416 11 O -0.525 6.525 12 C -0.235 4.235 13 C -0.050 4.050 14 C -0.247 4.247 15 C -0.067 4.067 16 C -0.223 4.223 17 C 0.121 3.879 18 C -0.416 4.416 19 H 0.091 0.909 20 C 0.083 3.917 21 N -0.800 5.800 22 Si 0.909 3.091 23 H -0.270 1.270 24 H -0.235 1.235 25 H -0.290 1.290 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.022 -8.685 -9.758 13.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.022 4.022 3 N -0.355 5.355 4 C -0.008 4.008 5 C -0.224 4.224 6 C 0.402 3.598 7 F -0.161 7.161 8 F -0.169 7.169 9 F -0.168 7.168 10 C 0.376 3.624 11 O -0.400 6.400 12 C -0.240 4.240 13 C -0.069 4.069 14 C -0.266 4.266 15 C -0.086 4.086 16 C -0.242 4.242 17 C 0.117 3.883 18 C -0.444 4.444 19 H 0.109 0.891 20 C -0.137 4.137 21 N -0.423 5.423 22 Si 0.736 3.264 23 H -0.196 1.196 24 H -0.159 1.159 25 H -0.217 1.217 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.030 -7.746 -9.693 13.046 hybrid contribution 0.268 0.032 0.430 0.508 sum 4.298 -7.714 -9.263 12.798 Atomic orbital electron populations 1.22155 0.96103 1.01740 1.02730 1.21725 0.94670 0.82531 1.03321 1.47971 1.67664 1.14584 1.05266 1.21164 0.92805 1.00218 0.86622 1.23348 1.03936 1.02365 0.92741 1.20516 0.73354 0.78509 0.87421 1.93216 1.94720 1.33467 1.94677 1.93179 1.40027 1.94806 1.88873 1.93171 1.64932 1.88491 1.70158 1.18524 0.74650 0.86408 0.82852 1.90736 1.47149 1.15829 1.86237 1.19350 1.08730 1.00357 0.95533 1.20637 0.96799 0.92888 0.96560 1.20277 1.08539 1.02728 0.95078 1.20699 0.95286 0.95649 0.96942 1.20976 1.06337 0.97691 0.99153 1.17456 0.88893 0.92190 0.89736 1.19483 1.24136 1.02373 0.98379 0.89113 1.26212 0.93173 0.93977 1.00372 1.69528 1.28428 1.12234 1.32154 0.86357 0.82503 0.77688 0.79836 1.19630 1.15856 1.21720 0.92010 0.91453 0.93062 0.91693 0.88330 0.89885 0.88575 0.86879 0.87397 0.88359 0.88390 0.88504 0.88099 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.15 0.38 -1.87 16 2 C 0.10 1.35 5.95 -4.04 -0.02 1.32 16 3 N -0.62 -10.17 2.47 -174.95 -0.43 -10.60 16 4 C 0.12 1.63 5.23 -4.05 -0.02 1.61 16 5 C -0.18 -2.16 5.58 -26.74 -0.15 -2.31 16 6 C 0.46 5.45 3.16 37.16 0.12 5.57 16 7 F -0.18 -2.49 16.80 2.25 0.04 -2.45 16 8 F -0.19 -2.26 17.32 2.25 0.04 -2.22 16 9 F -0.19 -2.17 16.80 2.25 0.04 -2.13 16 10 C 0.58 12.52 6.33 -12.52 -0.08 12.45 16 11 O -0.52 -13.27 15.88 5.26 0.08 -13.18 16 12 C -0.24 -5.18 4.94 -104.37 -0.52 -5.70 16 13 C -0.05 -0.95 7.47 -39.22 -0.29 -1.24 16 14 C -0.25 -4.55 10.03 -39.37 -0.39 -4.95 16 15 C -0.07 -1.33 10.01 -39.60 -0.40 -1.72 16 16 C -0.22 -5.02 6.71 -38.89 -0.26 -5.28 16 17 C 0.12 2.97 5.13 -106.54 -0.55 2.42 16 18 C -0.42 -11.22 8.44 -37.81 -0.32 -11.53 16 19 H 0.09 2.66 7.62 -52.49 -0.40 2.26 16 20 C 0.08 2.17 5.51 -17.30 -0.10 2.08 16 21 N -0.80 -21.48 13.92 55.56 0.77 -20.71 16 22 Si 0.91 20.54 24.43 -169.99 -4.15 16.39 16 23 H -0.27 -5.76 6.91 56.52 0.39 -5.37 16 24 H -0.24 -5.43 6.20 56.52 0.35 -5.08 16 25 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.67 8.11 -51.93 -0.42 0.24 16 30 H 0.10 1.42 4.45 -51.93 -0.23 1.18 16 31 H 0.08 0.97 7.73 -51.93 -0.40 0.57 16 32 H 0.10 1.59 7.01 -51.93 -0.36 1.22 16 33 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.10 1.57 7.59 -52.48 -0.40 1.17 16 36 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.10 2.26 4.54 -52.49 -0.24 2.02 16 39 H 0.29 6.98 8.29 -40.82 -0.34 6.64 16 LS Contribution 334.74 15.07 5.04 5.04 Total: -1.00 -29.28 334.74 -5.78 -35.06 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -4.61 Total: 3.96 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -2.60 Total: -9.16 kcal Atomic # 7 Polarization: -31.65 SS G_CDS: 0.34 Total: -31.31 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.08 Total: -13.18 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.11 Total: -6.81 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.15 Total: 16.39 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.28 -5.78 -35.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601023679.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.601 kcal (2) G-P(sol) polarization free energy of solvation -29.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds